Protein–RNA interactions for Protein: Q99MT2

Msh4, MutS protein homolog 4, mousemouse

Predictions only

Length 958 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh4Q99MT2 Mbp-208ENSMUST00000114676 1685 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Msh4Q99MT2 Gm26776-201ENSMUST00000180479 1872 ntTSL 5 BASIC20.28■□□□□ 0.84
Msh4Q99MT2 Ppp3cc-201ENSMUST00000078434 1970 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Msh4Q99MT2 4930526A20Rik-202ENSMUST00000142461 1628 ntBASIC20.27■□□□□ 0.84
Msh4Q99MT2 Phf12-202ENSMUST00000108360 3047 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Msh4Q99MT2 Mettl24-201ENSMUST00000058747 1529 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
Msh4Q99MT2 Chsy1-201ENSMUST00000036372 4176 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
Msh4Q99MT2 Rbfox3-206ENSMUST00000120061 2150 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.83
Msh4Q99MT2 Rhob-201ENSMUST00000067384 2349 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
Msh4Q99MT2 Plpp1-201ENSMUST00000016144 1598 ntAPPRIS P4 TSL 1 (best) BASIC20.26■□□□□ 0.83
Msh4Q99MT2 Barx1-201ENSMUST00000021813 1399 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Msh4Q99MT2 Hrasls-204ENSMUST00000162747 854 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Msh4Q99MT2 Gm18755-201ENSMUST00000218030 1099 ntBASIC20.26■□□□□ 0.83
Msh4Q99MT2 AC164424.2-201ENSMUST00000223281 725 ntTSL 3 BASIC20.26■□□□□ 0.83
Msh4Q99MT2 Gm10232-201ENSMUST00000089221 720 ntBASIC20.26■□□□□ 0.83
Msh4Q99MT2 Gm20634-201ENSMUST00000090779 2956 ntBASIC20.26■□□□□ 0.83
Msh4Q99MT2 Srsf12-201ENSMUST00000067864 2939 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Msh4Q99MT2 Ubtf-201ENSMUST00000006754 3213 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Msh4Q99MT2 Ewsr1-205ENSMUST00000102930 2174 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
Msh4Q99MT2 Hs6st3-201ENSMUST00000065904 1708 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Msh4Q99MT2 Raph1-201ENSMUST00000027168 2241 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
Msh4Q99MT2 Efna3-203ENSMUST00000200436 742 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
Msh4Q99MT2 Trappc6b-207ENSMUST00000218686 785 ntTSL 3 BASIC20.25■□□□□ 0.83
Msh4Q99MT2 AC093043.1-201ENSMUST00000226700 898 ntBASIC20.25■□□□□ 0.83
Msh4Q99MT2 Zfp598-201ENSMUST00000047179 3286 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Msh4Q99MT2 Dok6-201ENSMUST00000097495 1441 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Msh4Q99MT2 Larp4b-204ENSMUST00000188939 2658 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Msh4Q99MT2 Anp32b-201ENSMUST00000102926 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Msh4Q99MT2 Maf1-211ENSMUST00000161527 1743 ntAPPRIS P2 TSL 5 BASIC20.24■□□□□ 0.83
Msh4Q99MT2 Gm9934-202ENSMUST00000191246 1713 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Msh4Q99MT2 Sh3rf3-202ENSMUST00000135526 1940 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Msh4Q99MT2 Irf2bp1-201ENSMUST00000053713 2734 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
Msh4Q99MT2 Gm35161-201ENSMUST00000221765 941 ntTSL 5 BASIC20.24■□□□□ 0.83
Msh4Q99MT2 Btbd6-206ENSMUST00000222209 644 ntTSL 3 BASIC20.24■□□□□ 0.83
Msh4Q99MT2 Tlx2-201ENSMUST00000089641 1236 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Msh4Q99MT2 Ctsz-201ENSMUST00000016400 1441 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Msh4Q99MT2 Klf15-201ENSMUST00000032174 2373 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Msh4Q99MT2 Prdm13-201ENSMUST00000076206 2993 ntAPPRIS ALT2 TSL 2 BASIC20.24■□□□□ 0.83
Msh4Q99MT2 Ttc39c-201ENSMUST00000025294 2571 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Msh4Q99MT2 Gm28536-201ENSMUST00000190971 1317 ntBASIC20.24■□□□□ 0.83
Msh4Q99MT2 Emc6-201ENSMUST00000054952 1332 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Msh4Q99MT2 Ube2k-204ENSMUST00000201292 1529 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Msh4Q99MT2 Mrgbp-201ENSMUST00000029085 1510 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Msh4Q99MT2 Gpr160-202ENSMUST00000108258 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Msh4Q99MT2 Tcea2-201ENSMUST00000103042 1183 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Msh4Q99MT2 Pink1-203ENSMUST00000105817 1711 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
Msh4Q99MT2 Gm16464-201ENSMUST00000117815 1095 ntBASIC20.23■□□□□ 0.83
Msh4Q99MT2 4930500M09Rik-202ENSMUST00000194988 1563 ntBASIC20.23■□□□□ 0.83
Msh4Q99MT2 Gm42501-201ENSMUST00000200220 1026 ntBASIC20.23■□□□□ 0.83
Msh4Q99MT2 Foxg1-201ENSMUST00000021333 2941 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Msh4Q99MT2 Scarb1-202ENSMUST00000111390 2367 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Msh4Q99MT2 Tmem150a-201ENSMUST00000069695 1546 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Msh4Q99MT2 Gt(ROSA)26Sor-201ENSMUST00000124246 1181 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Msh4Q99MT2 Gm10653-201ENSMUST00000132250 1232 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Msh4Q99MT2 Hoxd11-202ENSMUST00000142312 1111 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Msh4Q99MT2 Gm10653-203ENSMUST00000156423 1232 ntTSL 5 BASIC20.22■□□□□ 0.83
Msh4Q99MT2 Osbpl2-201ENSMUST00000040668 2805 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Msh4Q99MT2 Cdc16-201ENSMUST00000043962 2301 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Msh4Q99MT2 Morf4l1-201ENSMUST00000085248 1882 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Msh4Q99MT2 Noc2l-202ENSMUST00000179886 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Msh4Q99MT2 Dynll1-201ENSMUST00000009157 2030 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Msh4Q99MT2 Thap4-206ENSMUST00000190116 5558 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Msh4Q99MT2 Pkd2-201ENSMUST00000086831 5219 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Msh4Q99MT2 Gm3558-201ENSMUST00000163790 2055 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Msh4Q99MT2 Barhl1-202ENSMUST00000113847 2160 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Msh4Q99MT2 Gm42418-201ENSMUST00000182010 1831 ntBASIC20.2■□□□□ 0.82
Msh4Q99MT2 Rsrc1-202ENSMUST00000065047 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
Msh4Q99MT2 Olig3-201ENSMUST00000053225 2072 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
Msh4Q99MT2 Mras-201ENSMUST00000035045 4701 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Msh4Q99MT2 Tmem147-203ENSMUST00000207296 875 ntTSL 3 BASIC20.2■□□□□ 0.82
Msh4Q99MT2 Mt2-201ENSMUST00000034214 511 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Msh4Q99MT2 Camk2n2-201ENSMUST00000052939 1291 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Msh4Q99MT2 Arhgap9-204ENSMUST00000219511 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
Msh4Q99MT2 Pdf-201ENSMUST00000055316 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Msh4Q99MT2 Plk5-202ENSMUST00000105351 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
Msh4Q99MT2 Whrn-208ENSMUST00000119294 2632 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Msh4Q99MT2 Ttc14-211ENSMUST00000200271 2724 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Msh4Q99MT2 6430573P05Rik-203ENSMUST00000195547 2457 ntBASIC20.19■□□□□ 0.82
Msh4Q99MT2 5031439G07Rik-201ENSMUST00000047144 6845 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Msh4Q99MT2 Txnrd2-201ENSMUST00000115604 1235 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Msh4Q99MT2 Socs2-202ENSMUST00000119917 948 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Msh4Q99MT2 Tmem150b-201ENSMUST00000086363 1341 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Msh4Q99MT2 Wnt5b-204ENSMUST00000178696 2371 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Msh4Q99MT2 Rfng-201ENSMUST00000026156 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Msh4Q99MT2 Arf4-201ENSMUST00000022429 2165 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Msh4Q99MT2 Rps19-202ENSMUST00000108429 633 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
Msh4Q99MT2 Rapgef1-201ENSMUST00000091146 6212 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
Msh4Q99MT2 Map4k3-202ENSMUST00000112389 4231 ntAPPRIS ALT1 TSL 5 BASIC20.18■□□□□ 0.82
Msh4Q99MT2 Magi2-202ENSMUST00000101558 6530 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Msh4Q99MT2 Retreg2-208ENSMUST00000190240 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
Msh4Q99MT2 Mrpl48-207ENSMUST00000146003 1625 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Msh4Q99MT2 Gm45869-201ENSMUST00000210335 1704 ntTSL 5 BASIC20.17■□□□□ 0.82
Msh4Q99MT2 Mbnl3-203ENSMUST00000114876 2243 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
Msh4Q99MT2 Nle1-201ENSMUST00000103213 1783 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Msh4Q99MT2 Gm27253-201ENSMUST00000183670 367 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Msh4Q99MT2 Rnaset2b-201ENSMUST00000089119 1013 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Msh4Q99MT2 Brsk1-201ENSMUST00000048248 2996 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Msh4Q99MT2 Zfp36l1-202ENSMUST00000165114 1934 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
Msh4Q99MT2 Osbp-201ENSMUST00000025590 4578 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
Msh4Q99MT2 Rcor3-206ENSMUST00000192491 1623 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Retrieved 100 of 76,532 protein–RNA pairs in 33 ms