Protein–RNA interactions for Protein: Q8R5L3

Vps39, Vam6/Vps39-like protein, mousemouse

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps39Q8R5L3 Slc9a7-202ENSMUST00000115393 2152 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
Vps39Q8R5L3 Fam168b-204ENSMUST00000170092 941 ntTSL 5 BASIC20.93■□□□□ 0.94
Vps39Q8R5L3 Sds-204ENSMUST00000201684 1288 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
Vps39Q8R5L3 Spsb3-209ENSMUST00000168265 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
Vps39Q8R5L3 Pdss1-207ENSMUST00000152170 1538 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Vps39Q8R5L3 Acsl6-209ENSMUST00000108904 2594 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Vps39Q8R5L3 Psip1-202ENSMUST00000107214 1973 ntTSL 5 BASIC20.92■□□□□ 0.94
Vps39Q8R5L3 Nkx2-2-201ENSMUST00000067075 2120 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Vps39Q8R5L3 Ipmk-201ENSMUST00000079252 5447 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
Vps39Q8R5L3 Btf3l4-203ENSMUST00000102741 1033 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Vps39Q8R5L3 Mad2l2-201ENSMUST00000030860 1535 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Vps39Q8R5L3 Plpp1-201ENSMUST00000016144 1598 ntAPPRIS P4 TSL 1 (best) BASIC20.92■□□□□ 0.94
Vps39Q8R5L3 Mvb12b-201ENSMUST00000041555 4998 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Vps39Q8R5L3 Smarcad1-201ENSMUST00000031984 5168 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Vps39Q8R5L3 Magi3-201ENSMUST00000064371 6640 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
Vps39Q8R5L3 Idh3a-205ENSMUST00000217484 2580 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Vps39Q8R5L3 Snapin-203ENSMUST00000149884 1928 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Vps39Q8R5L3 Setd4-201ENSMUST00000023669 1816 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
Vps39Q8R5L3 Gm5602-201ENSMUST00000146366 1763 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Vps39Q8R5L3 Homer2-201ENSMUST00000026922 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
Vps39Q8R5L3 Phf12-202ENSMUST00000108360 3047 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Vps39Q8R5L3 Dynll1-202ENSMUST00000112090 729 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
Vps39Q8R5L3 Papola-211ENSMUST00000166735 1033 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Vps39Q8R5L3 Shisa5-201ENSMUST00000026737 1834 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
Vps39Q8R5L3 Gga1-201ENSMUST00000041587 3034 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
Vps39Q8R5L3 Sox2-201ENSMUST00000099151 2057 ntAPPRIS P1 BASIC20.89■□□□□ 0.93
Vps39Q8R5L3 Dleu7-201ENSMUST00000063169 1314 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Vps39Q8R5L3 1700065D16Rik-202ENSMUST00000188975 506 ntTSL 3 BASIC20.89■□□□□ 0.93
Vps39Q8R5L3 Gm38160-201ENSMUST00000193090 2499 ntBASIC20.89■□□□□ 0.93
Vps39Q8R5L3 A230052G05Rik-201ENSMUST00000050921 2302 ntBASIC20.89■□□□□ 0.93
Vps39Q8R5L3 Map3k21-201ENSMUST00000034316 5693 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Vps39Q8R5L3 Abhd12-201ENSMUST00000056149 1999 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Vps39Q8R5L3 Fance-204ENSMUST00000114804 1842 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Vps39Q8R5L3 Krt8-201ENSMUST00000023952 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Vps39Q8R5L3 Cckbr-202ENSMUST00000181339 1326 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Vps39Q8R5L3 Acad9-205ENSMUST00000196648 552 ntTSL 3 BASIC20.88■□□□□ 0.93
Vps39Q8R5L3 Cers5-201ENSMUST00000023762 2096 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
Vps39Q8R5L3 AC158990.1-201ENSMUST00000221450 2016 ntBASIC20.88■□□□□ 0.93
Vps39Q8R5L3 Pstpip1-201ENSMUST00000059206 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Vps39Q8R5L3 H2afj-201ENSMUST00000074556 1831 ntAPPRIS P2 BASIC20.88■□□□□ 0.93
Vps39Q8R5L3 Ell3-201ENSMUST00000028679 2115 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Vps39Q8R5L3 Rap1a-201ENSMUST00000090678 2407 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Vps39Q8R5L3 Kansl1-204ENSMUST00000106972 5427 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
Vps39Q8R5L3 Rcor1-201ENSMUST00000084968 5684 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
Vps39Q8R5L3 Puf60-202ENSMUST00000100527 1878 ntAPPRIS P4 TSL 1 (best) BASIC20.87■□□□□ 0.93
Vps39Q8R5L3 Cdx1-201ENSMUST00000025521 1750 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Vps39Q8R5L3 Abhd11-201ENSMUST00000046999 1493 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Vps39Q8R5L3 Sugct-201ENSMUST00000068545 1701 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Vps39Q8R5L3 Prdm11-205ENSMUST00000178666 1870 ntTSL 5 BASIC20.86■□□□□ 0.93
Vps39Q8R5L3 Dvl3-201ENSMUST00000003318 2498 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Vps39Q8R5L3 Zfp36l1-202ENSMUST00000165114 1934 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
Vps39Q8R5L3 Metrnl-201ENSMUST00000036742 1401 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
Vps39Q8R5L3 Ttc39c-201ENSMUST00000025294 2571 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
Vps39Q8R5L3 Kti12-201ENSMUST00000102738 1629 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
Vps39Q8R5L3 Tmem240-202ENSMUST00000147721 817 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Vps39Q8R5L3 Llph-202ENSMUST00000130198 1463 ntAPPRIS P1 TSL 3 BASIC20.85■□□□□ 0.93
Vps39Q8R5L3 Elf2-212ENSMUST00000194641 5919 ntAPPRIS P3 TSL 5 BASIC20.85■□□□□ 0.93
Vps39Q8R5L3 Ccdc61-201ENSMUST00000098780 2022 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Vps39Q8R5L3 Tmub1-202ENSMUST00000115033 1598 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
Vps39Q8R5L3 Gm27040-201ENSMUST00000181984 504 ntTSL 2 BASIC20.84■□□□□ 0.93
Vps39Q8R5L3 Gm43006-201ENSMUST00000197702 1602 ntBASIC20.84■□□□□ 0.93
Vps39Q8R5L3 5031439G07Rik-203ENSMUST00000165743 5032 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
Vps39Q8R5L3 Pgam1-201ENSMUST00000011896 1831 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Vps39Q8R5L3 Gm11847-201ENSMUST00000125165 1119 ntBASIC20.83■□□□□ 0.93
Vps39Q8R5L3 Shox2-204ENSMUST00000162439 1081 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
Vps39Q8R5L3 Hnrnpa3-201ENSMUST00000090792 1140 ntAPPRIS P3 TSL 5 BASIC20.83■□□□□ 0.93
Vps39Q8R5L3 Arhgap9-204ENSMUST00000219511 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
Vps39Q8R5L3 Plk5-201ENSMUST00000039836 2112 ntAPPRIS P3 TSL 2 BASIC20.83■□□□□ 0.92
Vps39Q8R5L3 Atxn7l2-201ENSMUST00000102633 3044 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.92
Vps39Q8R5L3 Gm44949-201ENSMUST00000206423 1450 ntBASIC20.82■□□□□ 0.92
Vps39Q8R5L3 Gm28536-201ENSMUST00000190971 1317 ntBASIC20.82■□□□□ 0.92
Vps39Q8R5L3 Slc27a3-201ENSMUST00000029541 2259 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Vps39Q8R5L3 Krtap28-10-201ENSMUST00000188323 957 ntAPPRIS P1 BASIC20.82■□□□□ 0.92
Vps39Q8R5L3 Tmem147-203ENSMUST00000207296 875 ntTSL 3 BASIC20.82■□□□□ 0.92
Vps39Q8R5L3 Fastk-202ENSMUST00000115041 1399 ntAPPRIS ALT2 TSL 5 BASIC20.82■□□□□ 0.92
Vps39Q8R5L3 Tmem55b-209ENSMUST00000162957 1465 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Vps39Q8R5L3 Cnnm1-202ENSMUST00000223787 2931 ntAPPRIS ALT2 BASIC20.81■□□□□ 0.92
Vps39Q8R5L3 Emc6-201ENSMUST00000054952 1332 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Vps39Q8R5L3 Trim33-202ENSMUST00000106860 5025 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
Vps39Q8R5L3 Atp8a1-203ENSMUST00000113651 808 ntTSL 5 BASIC20.81■□□□□ 0.92
Vps39Q8R5L3 Tmem160-201ENSMUST00000019302 815 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Vps39Q8R5L3 Vegfb-201ENSMUST00000025914 1281 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
Vps39Q8R5L3 Jtb-201ENSMUST00000029546 1101 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Vps39Q8R5L3 Tlx2-202ENSMUST00000174674 1514 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Vps39Q8R5L3 Galr2-201ENSMUST00000055872 1940 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Vps39Q8R5L3 Slc35a2-201ENSMUST00000096514 1757 ntTSL 5 BASIC20.8■□□□□ 0.92
Vps39Q8R5L3 Gorasp2-201ENSMUST00000028509 2238 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
Vps39Q8R5L3 Gm2415-201ENSMUST00000128982 1474 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Vps39Q8R5L3 Ntsr2-201ENSMUST00000111064 1524 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Vps39Q8R5L3 Cap2-205ENSMUST00000225824 1634 ntBASIC20.79■□□□□ 0.92
Vps39Q8R5L3 Btbd17-201ENSMUST00000000206 1717 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Vps39Q8R5L3 Aebp2-203ENSMUST00000095350 2575 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
Vps39Q8R5L3 Picalm-212ENSMUST00000208730 3427 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
Vps39Q8R5L3 Atp5j-202ENSMUST00000114191 742 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
Vps39Q8R5L3 Gm28417-202ENSMUST00000185881 538 ntTSL 3 BASIC20.79■□□□□ 0.92
Vps39Q8R5L3 Tmem42-201ENSMUST00000084733 1041 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Vps39Q8R5L3 Polr2m-201ENSMUST00000034720 2200 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Vps39Q8R5L3 Gabbr1-209ENSMUST00000174456 1595 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
Vps39Q8R5L3 Ttc14-211ENSMUST00000200271 2724 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
Vps39Q8R5L3 Nkx2-5-201ENSMUST00000015723 1525 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Retrieved 100 of 76,532 protein–RNA pairs in 20.1 ms