Protein–RNA interactions for Protein: Q811S7

Ubp1, Upstream-binding protein 1, mousemouse

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubp1Q811S7 Cdkn2d-203ENSMUST00000215619 1423 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Ubp1Q811S7 Gt(ROSA)26Sor-201ENSMUST00000124246 1181 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Ubp1Q811S7 Bloc1s5-202ENSMUST00000224115 1020 ntBASIC20.57■□□□□ 0.88
Ubp1Q811S7 Bex1-201ENSMUST00000058125 866 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Ubp1Q811S7 Gm11492-201ENSMUST00000060360 1972 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
Ubp1Q811S7 Slc9a7-202ENSMUST00000115393 2152 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
Ubp1Q811S7 Pou3f3-201ENSMUST00000054883 7409 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
Ubp1Q811S7 Kctd20-201ENSMUST00000057174 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Ubp1Q811S7 Aurkb-202ENSMUST00000108666 1831 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
Ubp1Q811S7 Pgk1-201ENSMUST00000081593 1825 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Ubp1Q811S7 Zfp629-208ENSMUST00000151107 583 ntTSL 3 BASIC20.56■□□□□ 0.88
Ubp1Q811S7 A730035I17Rik-205ENSMUST00000205851 684 ntBASIC20.56■□□□□ 0.88
Ubp1Q811S7 Clec3b-201ENSMUST00000026890 992 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Ubp1Q811S7 Camk2n2-201ENSMUST00000052939 1291 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Ubp1Q811S7 Ech1-201ENSMUST00000066264 1267 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Ubp1Q811S7 Hif1a-203ENSMUST00000110464 1759 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Ubp1Q811S7 Agap2-201ENSMUST00000039259 5633 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
Ubp1Q811S7 Gm37415-201ENSMUST00000192265 2054 ntBASIC20.55■□□□□ 0.88
Ubp1Q811S7 Sox2-201ENSMUST00000099151 2057 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
Ubp1Q811S7 Hmg20b-203ENSMUST00000105324 1540 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Ubp1Q811S7 Srsf6-202ENSMUST00000126163 515 ntTSL 5 BASIC20.55■□□□□ 0.88
Ubp1Q811S7 Gm18190-203ENSMUST00000209944 389 ntTSL 2 BASIC20.55■□□□□ 0.88
Ubp1Q811S7 AC164424.2-201ENSMUST00000223281 725 ntTSL 3 BASIC20.55■□□□□ 0.88
Ubp1Q811S7 D130058E05Rik-201ENSMUST00000173856 1372 ntTSL 2 BASIC20.55■□□□□ 0.88
Ubp1Q811S7 AC124392.1-201ENSMUST00000225172 5324 ntBASIC20.55■□□□□ 0.88
Ubp1Q811S7 Ube2b-201ENSMUST00000020657 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Ubp1Q811S7 Chrna7-201ENSMUST00000032738 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Ubp1Q811S7 Tmem143-201ENSMUST00000069772 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Ubp1Q811S7 Clta-206ENSMUST00000170241 1079 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
Ubp1Q811S7 Bloc1s4-201ENSMUST00000071949 1273 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
Ubp1Q811S7 Nrxn1-213ENSMUST00000172466 2477 ntTSL 5 BASIC20.53■□□□□ 0.88
Ubp1Q811S7 Amn-201ENSMUST00000021707 1701 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Ubp1Q811S7 March8-204ENSMUST00000123405 2102 ntTSL 5 BASIC20.53■□□□□ 0.88
Ubp1Q811S7 AW121686-201ENSMUST00000181049 2200 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Ubp1Q811S7 Dact1-202ENSMUST00000150639 2448 ntAPPRIS P1 TSL 3 BASIC20.53■□□□□ 0.88
Ubp1Q811S7 Socs2-202ENSMUST00000119917 948 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Ubp1Q811S7 Bub3-205ENSMUST00000208571 747 ntTSL 5 BASIC20.53■□□□□ 0.88
Ubp1Q811S7 2210011C24Rik-204ENSMUST00000190457 1351 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Ubp1Q811S7 Llph-202ENSMUST00000130198 1463 ntAPPRIS P1 TSL 3 BASIC20.53■□□□□ 0.88
Ubp1Q811S7 Maf1-201ENSMUST00000023212 1686 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Ubp1Q811S7 Lmtk3-202ENSMUST00000120005 4997 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Ubp1Q811S7 Fip1l1-202ENSMUST00000113534 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Ubp1Q811S7 Tk2-205ENSMUST00000212275 1507 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
Ubp1Q811S7 Selenof-201ENSMUST00000082437 1514 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Ubp1Q811S7 Nfkbil1-201ENSMUST00000048994 1447 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Ubp1Q811S7 Rfwd2-201ENSMUST00000076894 5116 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Ubp1Q811S7 Dmtn-209ENSMUST00000228295 2572 ntBASIC20.52■□□□□ 0.88
Ubp1Q811S7 Gadd45a-207ENSMUST00000204369 716 ntTSL 5 BASIC20.52■□□□□ 0.88
Ubp1Q811S7 Fkbp1b-201ENSMUST00000020964 976 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Ubp1Q811S7 Pxmp2-201ENSMUST00000031472 1041 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Ubp1Q811S7 1700016K19Rik-201ENSMUST00000066408 921 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Ubp1Q811S7 Maf1-211ENSMUST00000161527 1743 ntAPPRIS P2 TSL 5 BASIC20.52■□□□□ 0.88
Ubp1Q811S7 Rfx5-205ENSMUST00000107260 2355 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
Ubp1Q811S7 AC116713.1-201ENSMUST00000215074 430 ntBASIC20.51■□□□□ 0.87
Ubp1Q811S7 Foxj3-206ENSMUST00000138845 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
Ubp1Q811S7 Alkal2-201ENSMUST00000067087 1509 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Ubp1Q811S7 Magi3-202ENSMUST00000121198 5912 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
Ubp1Q811S7 Fam189a2-201ENSMUST00000096164 2547 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
Ubp1Q811S7 Gm10620-201ENSMUST00000098379 1332 ntBASIC20.51■□□□□ 0.87
Ubp1Q811S7 Btbd17-201ENSMUST00000000206 1717 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Ubp1Q811S7 Ubac1-201ENSMUST00000036509 1852 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
Ubp1Q811S7 Kcnip3-202ENSMUST00000088538 1296 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Ubp1Q811S7 Dlg3-201ENSMUST00000000901 4885 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Ubp1Q811S7 9230116N13Rik-201ENSMUST00000181746 2097 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Ubp1Q811S7 Adcy9-203ENSMUST00000120080 4974 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
Ubp1Q811S7 Rgs6-202ENSMUST00000161801 2141 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Ubp1Q811S7 Fastk-201ENSMUST00000030800 1893 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
Ubp1Q811S7 Tpm1-211ENSMUST00000113695 1607 ntTSL 3 BASIC20.49■□□□□ 0.87
Ubp1Q811S7 Dus1l-209ENSMUST00000167023 1909 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
Ubp1Q811S7 Dus1l-201ENSMUST00000026151 1930 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
Ubp1Q811S7 Rnf187-201ENSMUST00000094151 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
Ubp1Q811S7 Fkbp8-201ENSMUST00000075491 1698 ntAPPRIS P4 TSL 1 (best) BASIC20.49■□□□□ 0.87
Ubp1Q811S7 Gm32051-202ENSMUST00000197905 2385 ntBASIC20.49■□□□□ 0.87
Ubp1Q811S7 Trim9-208ENSMUST00000221370 2393 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Ubp1Q811S7 Glp1r-201ENSMUST00000114574 1480 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Ubp1Q811S7 Acsl6-209ENSMUST00000108904 2594 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Ubp1Q811S7 1810010H24Rik-202ENSMUST00000140447 1677 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
Ubp1Q811S7 Tmem41a-201ENSMUST00000023562 1359 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Ubp1Q811S7 Fndc5-201ENSMUST00000102600 2763 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Ubp1Q811S7 Tbc1d2b-201ENSMUST00000041767 5956 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Ubp1Q811S7 Hand2-201ENSMUST00000040104 2351 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Ubp1Q811S7 Thap4-206ENSMUST00000190116 5558 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Ubp1Q811S7 Gpx7-202ENSMUST00000184609 331 ntTSL 3 BASIC20.48■□□□□ 0.87
Ubp1Q811S7 Gm10399-202ENSMUST00000202768 748 ntBASIC20.48■□□□□ 0.87
Ubp1Q811S7 Sin3b-203ENSMUST00000212095 1257 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Ubp1Q811S7 Gm9959-201ENSMUST00000068277 390 ntBASIC20.48■□□□□ 0.87
Ubp1Q811S7 Rab28-201ENSMUST00000031011 1635 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Ubp1Q811S7 Mxi1-202ENSMUST00000025998 4996 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Ubp1Q811S7 Spire2-201ENSMUST00000010298 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Ubp1Q811S7 Tarbp2-201ENSMUST00000023813 1523 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Ubp1Q811S7 Ccdc9-201ENSMUST00000041010 2379 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
Ubp1Q811S7 B4galt6-201ENSMUST00000070080 5808 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Ubp1Q811S7 Picalm-205ENSMUST00000207225 3489 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Ubp1Q811S7 Tmem120a-201ENSMUST00000043378 1559 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Ubp1Q811S7 Pptc7-201ENSMUST00000053426 4644 ntAPPRIS P2 TSL 1 (best) BASIC20.47■□□□□ 0.87
Ubp1Q811S7 Mt2-201ENSMUST00000034214 511 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Ubp1Q811S7 4930527J03Rik-201ENSMUST00000094270 543 ntBASIC20.47■□□□□ 0.87
Ubp1Q811S7 Mfn1-201ENSMUST00000091257 4562 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Ubp1Q811S7 Ralgapa1-204ENSMUST00000219432 6631 ntTSL 5 BASIC20.47■□□□□ 0.87
Ubp1Q811S7 Suz12-206ENSMUST00000163272 4303 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
Retrieved 100 of 76,532 protein–RNA pairs in 35.2 ms