Protein–RNA interactions for Protein: Q6P8W9

Hmgb4, High mobility group protein B4, mousemouse

Predictions only

Length 181 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb4Q6P8W9 Acss2-203ENSMUST00000103142 2145 ntTSL 5 BASIC21.85■■□□□ 1.09
Hmgb4Q6P8W9 G630030J09Rik-201ENSMUST00000181958 2135 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
Hmgb4Q6P8W9 Dusp15-202ENSMUST00000109811 753 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
Hmgb4Q6P8W9 Gm38160-201ENSMUST00000193090 2499 ntBASIC21.85■■□□□ 1.09
Hmgb4Q6P8W9 Cnnm1-202ENSMUST00000223787 2931 ntAPPRIS ALT2 BASIC21.85■■□□□ 1.09
Hmgb4Q6P8W9 Rap1a-201ENSMUST00000090678 2407 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Hmgb4Q6P8W9 Cntln-202ENSMUST00000102819 2239 ntAPPRIS P3 TSL 1 (best) BASIC21.84■■□□□ 1.09
Hmgb4Q6P8W9 Stk32c-201ENSMUST00000016125 2206 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Hmgb4Q6P8W9 Btbd6-201ENSMUST00000002880 2057 ntAPPRIS P4 TSL 1 (best) BASIC21.84■■□□□ 1.09
Hmgb4Q6P8W9 Mrfap1-201ENSMUST00000068795 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Hmgb4Q6P8W9 Efr3a-203ENSMUST00000172756 1411 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
Hmgb4Q6P8W9 Gm21956-201ENSMUST00000179946 522 ntBASIC21.84■■□□□ 1.09
Hmgb4Q6P8W9 Gm26558-201ENSMUST00000180559 861 ntAPPRIS P1 BASIC21.84■■□□□ 1.09
Hmgb4Q6P8W9 Slc36a1-201ENSMUST00000020499 1950 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Hmgb4Q6P8W9 Tex30-208ENSMUST00000147571 1360 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Hmgb4Q6P8W9 Picalm-212ENSMUST00000208730 3427 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
Hmgb4Q6P8W9 Gas2l1-202ENSMUST00000056649 2847 ntAPPRIS P3 TSL 5 BASIC21.83■■□□□ 1.09
Hmgb4Q6P8W9 Pi16-201ENSMUST00000114699 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.09
Hmgb4Q6P8W9 Dleu2-201ENSMUST00000180377 1165 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
Hmgb4Q6P8W9 8430432A02Rik-201ENSMUST00000039080 1248 ntBASIC21.83■■□□□ 1.09
Hmgb4Q6P8W9 Fnta-201ENSMUST00000016138 1930 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Hmgb4Q6P8W9 Lrrc3b-201ENSMUST00000055211 1655 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Hmgb4Q6P8W9 Tlk2-202ENSMUST00000092537 2743 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
Hmgb4Q6P8W9 0610010K14Rik-209ENSMUST00000108579 667 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
Hmgb4Q6P8W9 Dleu2-209ENSMUST00000182957 352 ntTSL 2 BASIC21.82■■□□□ 1.08
Hmgb4Q6P8W9 BC037034-201ENSMUST00000048421 2490 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Hmgb4Q6P8W9 C1ql2-201ENSMUST00000037286 2000 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Hmgb4Q6P8W9 Spr-203ENSMUST00000174769 1029 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
Hmgb4Q6P8W9 Fndc4-201ENSMUST00000041266 1375 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Hmgb4Q6P8W9 Zfand2b-201ENSMUST00000027394 1316 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Hmgb4Q6P8W9 A730098A19Rik-201ENSMUST00000188193 978 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
Hmgb4Q6P8W9 Zfp36l1-204ENSMUST00000219642 545 ntTSL 3 BASIC21.8■■□□□ 1.08
Hmgb4Q6P8W9 Ssr2-201ENSMUST00000035785 1189 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Hmgb4Q6P8W9 Sec22c-202ENSMUST00000111560 2669 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Hmgb4Q6P8W9 Ptpre-202ENSMUST00000209256 2593 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
Hmgb4Q6P8W9 Mpzl1-202ENSMUST00000111435 2285 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Hmgb4Q6P8W9 Pink1-203ENSMUST00000105817 1711 ntAPPRIS ALT2 TSL 5 BASIC21.79■■□□□ 1.08
Hmgb4Q6P8W9 Gm26775-201ENSMUST00000180684 2197 ntTSL 5 BASIC21.79■■□□□ 1.08
Hmgb4Q6P8W9 1810026B05Rik-203ENSMUST00000184587 5738 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
Hmgb4Q6P8W9 Idh3a-205ENSMUST00000217484 2580 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
Hmgb4Q6P8W9 Qk-201ENSMUST00000042296 6718 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
Hmgb4Q6P8W9 Gm10620-201ENSMUST00000098379 1332 ntBASIC21.79■■□□□ 1.08
Hmgb4Q6P8W9 Marc1-201ENSMUST00000048462 2039 ntAPPRIS P2 TSL 1 (best) BASIC21.79■■□□□ 1.08
Hmgb4Q6P8W9 Gm17324-201ENSMUST00000165499 922 ntAPPRIS P1 BASIC21.78■■□□□ 1.08
Hmgb4Q6P8W9 Rmdn2-208ENSMUST00000225357 2118 ntAPPRIS P1 BASIC21.78■■□□□ 1.08
Hmgb4Q6P8W9 Trir-201ENSMUST00000047281 902 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Hmgb4Q6P8W9 Barhl1-202ENSMUST00000113847 2160 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Hmgb4Q6P8W9 Tcte2-210ENSMUST00000148430 1839 ntAPPRIS P2 TSL 1 (best) BASIC21.78■■□□□ 1.08
Hmgb4Q6P8W9 Vstm4-201ENSMUST00000053175 2745 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Hmgb4Q6P8W9 Htra2-201ENSMUST00000089645 1725 ntAPPRIS P2 TSL 1 (best) BASIC21.77■■□□□ 1.08
Hmgb4Q6P8W9 Kif1bp-202ENSMUST00000159704 2622 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
Hmgb4Q6P8W9 Zcchc2-202ENSMUST00000119166 6368 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
Hmgb4Q6P8W9 Ubtf-201ENSMUST00000006754 3213 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
Hmgb4Q6P8W9 Atn1-201ENSMUST00000088357 4433 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Hmgb4Q6P8W9 Clta-204ENSMUST00000107849 1099 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
Hmgb4Q6P8W9 C1qtnf4-201ENSMUST00000111466 1290 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Hmgb4Q6P8W9 Dctn3-203ENSMUST00000171641 885 ntTSL 3 BASIC21.77■■□□□ 1.08
Hmgb4Q6P8W9 Rexo2-208ENSMUST00000216470 454 ntTSL 3 BASIC21.77■■□□□ 1.08
Hmgb4Q6P8W9 Ikbip-202ENSMUST00000020150 1328 ntAPPRIS P3 TSL 1 (best) BASIC21.77■■□□□ 1.07
Hmgb4Q6P8W9 Qtrt1-201ENSMUST00000002902 1316 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
Hmgb4Q6P8W9 Atpaf1-203ENSMUST00000176047 2330 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
Hmgb4Q6P8W9 Ppp5c-201ENSMUST00000003183 2072 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Hmgb4Q6P8W9 Slc18a3-201ENSMUST00000191501 2413 ntAPPRIS P1 BASIC21.76■■□□□ 1.07
Hmgb4Q6P8W9 E130307A14Rik-201ENSMUST00000129191 2011 ntTSL 3 BASIC21.76■■□□□ 1.07
Hmgb4Q6P8W9 AC140930.3-201ENSMUST00000222935 274 ntBASIC21.76■■□□□ 1.07
Hmgb4Q6P8W9 Kcnk1-202ENSMUST00000212831 1309 ntTSL 5 BASIC21.76■■□□□ 1.07
Hmgb4Q6P8W9 Lemd3-202ENSMUST00000119944 4743 ntAPPRIS P2 TSL 1 (best) BASIC21.75■■□□□ 1.07
Hmgb4Q6P8W9 Pou6f1-202ENSMUST00000073837 4953 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
Hmgb4Q6P8W9 Srm-201ENSMUST00000006611 1338 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Hmgb4Q6P8W9 Gm9780-202ENSMUST00000184915 1394 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Hmgb4Q6P8W9 4933431K14Rik-201ENSMUST00000195799 1352 ntBASIC21.74■■□□□ 1.07
Hmgb4Q6P8W9 Dpysl3-201ENSMUST00000025379 2106 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Hmgb4Q6P8W9 Kcnq5-201ENSMUST00000029667 6562 ntAPPRIS P3 TSL 1 (best) BASIC21.74■■□□□ 1.07
Hmgb4Q6P8W9 Gm15202-201ENSMUST00000154188 393 ntTSL 3 BASIC21.74■■□□□ 1.07
Hmgb4Q6P8W9 Slc37a3-211ENSMUST00000202749 434 ntTSL 5 BASIC21.74■■□□□ 1.07
Hmgb4Q6P8W9 D030056L22Rik-202ENSMUST00000062753 1677 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
Hmgb4Q6P8W9 Ntsr2-201ENSMUST00000111064 1524 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Hmgb4Q6P8W9 Eml4-201ENSMUST00000049503 5109 ntAPPRIS P3 TSL 1 (best) BASIC21.74■■□□□ 1.07
Hmgb4Q6P8W9 Glp1r-201ENSMUST00000114574 1480 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Hmgb4Q6P8W9 4930426I24Rik-202ENSMUST00000217797 1232 ntBASIC21.73■■□□□ 1.07
Hmgb4Q6P8W9 Tmem191c-213ENSMUST00000164950 1394 ntAPPRIS P1 TSL 3 BASIC21.73■■□□□ 1.07
Hmgb4Q6P8W9 Ooep-201ENSMUST00000034900 2138 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Hmgb4Q6P8W9 Gtpbp6-201ENSMUST00000077220 1617 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Hmgb4Q6P8W9 B430218F22Rik-201ENSMUST00000181168 1495 ntAPPRIS P1 BASIC21.72■■□□□ 1.07
Hmgb4Q6P8W9 Gm12922-201ENSMUST00000120626 809 ntBASIC21.72■■□□□ 1.07
Hmgb4Q6P8W9 Gm16253-201ENSMUST00000148290 550 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Hmgb4Q6P8W9 5930403N24Rik-204ENSMUST00000217338 337 ntTSL 2 BASIC21.72■■□□□ 1.07
Hmgb4Q6P8W9 Cep68-202ENSMUST00000109596 2171 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
Hmgb4Q6P8W9 Tmem185a-202ENSMUST00000114630 1307 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Hmgb4Q6P8W9 Zc3h8-201ENSMUST00000028866 1624 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Hmgb4Q6P8W9 Morn4-201ENSMUST00000051772 1816 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Hmgb4Q6P8W9 Nsmf-213ENSMUST00000140737 862 ntTSL 5 BASIC21.71■■□□□ 1.07
Hmgb4Q6P8W9 Gm44866-201ENSMUST00000208774 391 ntTSL 2 BASIC21.71■■□□□ 1.07
Hmgb4Q6P8W9 Mpnd-204ENSMUST00000149441 1701 ntAPPRIS P2 TSL 1 (best) BASIC21.71■■□□□ 1.07
Hmgb4Q6P8W9 Mir155hg-202ENSMUST00000185662 1362 ntTSL 5 BASIC21.71■■□□□ 1.07
Hmgb4Q6P8W9 Smim19-201ENSMUST00000033935 1402 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Hmgb4Q6P8W9 Letm2-209ENSMUST00000210810 1538 ntTSL 1 (best) BASIC21.7■■□□□ 1.07
Hmgb4Q6P8W9 Mecp2-201ENSMUST00000033770 1739 ntAPPRIS P4 TSL 1 (best) BASIC21.7■■□□□ 1.06
Hmgb4Q6P8W9 Bex1-202ENSMUST00000113118 754 ntAPPRIS P1 TSL 2 BASIC21.7■■□□□ 1.06
Hmgb4Q6P8W9 Gm32051-202ENSMUST00000197905 2385 ntBASIC21.7■■□□□ 1.06
Retrieved 100 of 76,532 protein–RNA pairs in 21.8 ms