Protein–RNA interactions for Protein: Q61371

Ift88, Intraflagellar transport protein 88 homolog, mousemouse

Predictions only

Length 824 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ift88Q61371 Chn2-201ENSMUST00000046856 2418 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
Ift88Q61371 Setd4-201ENSMUST00000023669 1816 ntAPPRIS P1 TSL 5 BASIC23.12■■□□□ 1.29
Ift88Q61371 Auh-204ENSMUST00000120535 1647 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
Ift88Q61371 Tmem164-204ENSMUST00000112889 1742 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
Ift88Q61371 Gm11614-201ENSMUST00000137598 736 ntTSL 5 BASIC23.11■■□□□ 1.29
Ift88Q61371 Mettl24-201ENSMUST00000058747 1529 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
Ift88Q61371 AC158990.1-201ENSMUST00000221450 2016 ntBASIC23.11■■□□□ 1.29
Ift88Q61371 Jdp2-201ENSMUST00000050687 1643 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
Ift88Q61371 Efcc1-201ENSMUST00000032132 2729 ntAPPRIS ALT2 TSL 5 BASIC23.1■■□□□ 1.29
Ift88Q61371 Lipt2-201ENSMUST00000032967 1663 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
Ift88Q61371 Dynll1-201ENSMUST00000009157 2030 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
Ift88Q61371 Kcng2-201ENSMUST00000077962 2813 ntAPPRIS P1 TSL 5 BASIC23.1■■□□□ 1.29
Ift88Q61371 Ralgapa1-204ENSMUST00000219432 6631 ntTSL 5 BASIC23.1■■□□□ 1.29
Ift88Q61371 Homer2-201ENSMUST00000026922 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC23.1■■□□□ 1.29
Ift88Q61371 Fam20b-201ENSMUST00000086153 4414 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
Ift88Q61371 Tmem164-206ENSMUST00000112896 5224 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
Ift88Q61371 Mbd3-201ENSMUST00000092295 1662 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
Ift88Q61371 Irx5-202ENSMUST00000210246 2550 ntTSL 5 BASIC23.09■■□□□ 1.29
Ift88Q61371 Mpped1-208ENSMUST00000163723 1064 ntTSL 5 BASIC23.09■■□□□ 1.29
Ift88Q61371 Gm5987-201ENSMUST00000196433 1151 ntBASIC23.09■■□□□ 1.29
Ift88Q61371 Pou3f3-201ENSMUST00000054883 7409 ntAPPRIS P1 BASIC23.09■■□□□ 1.29
Ift88Q61371 Llph-202ENSMUST00000130198 1463 ntAPPRIS P1 TSL 3 BASIC23.09■■□□□ 1.29
Ift88Q61371 Mtx1-202ENSMUST00000118964 1445 ntTSL 5 BASIC23.08■■□□□ 1.29
Ift88Q61371 Pdss1-207ENSMUST00000152170 1538 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
Ift88Q61371 B430319F04Rik-201ENSMUST00000209731 2669 ntBASIC23.08■■□□□ 1.29
Ift88Q61371 Lrp3-202ENSMUST00000122409 4147 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
Ift88Q61371 Gm7332-201ENSMUST00000118351 454 ntBASIC23.08■■□□□ 1.29
Ift88Q61371 Hnrnpk-210ENSMUST00000176558 1053 ntTSL 2 BASIC23.08■■□□□ 1.29
Ift88Q61371 Znrf3-201ENSMUST00000109867 6311 ntAPPRIS P3 TSL 5 BASIC23.08■■□□□ 1.28
Ift88Q61371 Senp6-201ENSMUST00000037484 5111 ntAPPRIS P3 TSL 1 (best) BASIC23.07■■□□□ 1.28
Ift88Q61371 Uap1-201ENSMUST00000027981 2283 ntAPPRIS P3 TSL 1 (best) BASIC23.07■■□□□ 1.28
Ift88Q61371 Gm11175-201ENSMUST00000116172 543 ntBASIC23.07■■□□□ 1.28
Ift88Q61371 Gm20109-201ENSMUST00000180802 671 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
Ift88Q61371 Siva1-201ENSMUST00000021728 924 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
Ift88Q61371 Vcpkmt-201ENSMUST00000058639 1027 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
Ift88Q61371 Cops7a-201ENSMUST00000032220 1817 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
Ift88Q61371 Krt79-201ENSMUST00000023799 2097 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
Ift88Q61371 5730488B01Rik-201ENSMUST00000192889 2311 ntBASIC23.07■■□□□ 1.28
Ift88Q61371 Papd7-202ENSMUST00000198607 4750 ntAPPRIS ALT2 TSL 1 (best) BASIC23.06■■□□□ 1.28
Ift88Q61371 Dennd6a-202ENSMUST00000203874 2677 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
Ift88Q61371 Atp2b2-208ENSMUST00000205052 5658 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
Ift88Q61371 Raph1-202ENSMUST00000090293 2409 ntAPPRIS ALT2 TSL 5 BASIC23.06■■□□□ 1.28
Ift88Q61371 1700051O22Rik-202ENSMUST00000195451 638 ntBASIC23.06■■□□□ 1.28
Ift88Q61371 8430422M14Rik-201ENSMUST00000199608 822 ntBASIC23.06■■□□□ 1.28
Ift88Q61371 Spata5l1-202ENSMUST00000152813 1526 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
Ift88Q61371 Dok6-201ENSMUST00000097495 1441 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
Ift88Q61371 Kctd2-202ENSMUST00000106533 2649 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
Ift88Q61371 Pstpip1-201ENSMUST00000059206 1863 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
Ift88Q61371 Gm27253-201ENSMUST00000183670 367 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
Ift88Q61371 Glrx5-201ENSMUST00000021522 2925 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
Ift88Q61371 Gm43592-201ENSMUST00000196922 1165 ntBASIC23.04■■□□□ 1.28
Ift88Q61371 Btbd17-201ENSMUST00000000206 1717 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
Ift88Q61371 Gm5475-201ENSMUST00000132119 2608 ntAPPRIS P5 TSL 1 (best) BASIC23.04■■□□□ 1.28
Ift88Q61371 Kti12-201ENSMUST00000102738 1629 ntAPPRIS P1 BASIC23.04■■□□□ 1.28
Ift88Q61371 Gm9934-201ENSMUST00000098303 2077 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
Ift88Q61371 Snap91-203ENSMUST00000074501 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC23.03■■□□□ 1.28
Ift88Q61371 Ezh2-201ENSMUST00000081721 2787 ntAPPRIS P2 TSL 1 (best) BASIC23.03■■□□□ 1.28
Ift88Q61371 Zfp703-201ENSMUST00000127097 587 ntTSL 2 BASIC23.03■■□□□ 1.28
Ift88Q61371 Trappc6b-207ENSMUST00000218686 785 ntTSL 3 BASIC23.03■■□□□ 1.28
Ift88Q61371 A030014E15Rik-201ENSMUST00000223400 796 ntAPPRIS P1 BASIC23.03■■□□□ 1.28
Ift88Q61371 Nab2-201ENSMUST00000026469 2582 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
Ift88Q61371 Neo1-202ENSMUST00000214547 5414 ntAPPRIS ALT2 TSL 1 (best) BASIC23.03■■□□□ 1.28
Ift88Q61371 Pth1r-201ENSMUST00000006005 2307 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
Ift88Q61371 Gm5913-201ENSMUST00000119397 1399 ntBASIC23.02■■□□□ 1.28
Ift88Q61371 Npr3-205ENSMUST00000228603 2437 ntAPPRIS ALT2 BASIC23.02■■□□□ 1.28
Ift88Q61371 Plpp1-201ENSMUST00000016144 1598 ntAPPRIS P4 TSL 1 (best) BASIC23.02■■□□□ 1.28
Ift88Q61371 Dedd2-202ENSMUST00000205271 1942 ntAPPRIS P1 TSL 5 BASIC23.02■■□□□ 1.28
Ift88Q61371 Nars2-202ENSMUST00000107159 1777 ntTSL 5 BASIC23.02■■□□□ 1.28
Ift88Q61371 Rab4a-202ENSMUST00000118535 1419 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
Ift88Q61371 Arhgap39-204ENSMUST00000176219 542 ntTSL 5 BASIC23.02■■□□□ 1.28
Ift88Q61371 AC116713.1-201ENSMUST00000215074 430 ntBASIC23.02■■□□□ 1.28
Ift88Q61371 Cnrip1-201ENSMUST00000058159 1654 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
Ift88Q61371 Ccr10-201ENSMUST00000062759 1726 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
Ift88Q61371 Mpnd-209ENSMUST00000162883 1400 ntTSL 5 BASIC23.01■■□□□ 1.27
Ift88Q61371 Ube2k-206ENSMUST00000201984 1449 ntTSL 3 BASIC23.01■■□□□ 1.27
Ift88Q61371 Rpf2-201ENSMUST00000045114 1853 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
Ift88Q61371 Smad4-201ENSMUST00000025393 3384 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
Ift88Q61371 Rbfox3-204ENSMUST00000106278 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC23.01■■□□□ 1.27
Ift88Q61371 Bsg-201ENSMUST00000067036 1526 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
Ift88Q61371 Ccnd3-201ENSMUST00000037333 1999 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
Ift88Q61371 Mapk11-201ENSMUST00000088823 2440 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
Ift88Q61371 3110053B16Rik-202ENSMUST00000140360 2004 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
Ift88Q61371 9130213A22Rik-201ENSMUST00000180487 1581 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
Ift88Q61371 Ppp3ca-202ENSMUST00000070198 4758 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
Ift88Q61371 Fbxw2-203ENSMUST00000113075 2260 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
Ift88Q61371 Fndc5-201ENSMUST00000102600 2763 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
Ift88Q61371 1700001C19Rik-201ENSMUST00000061885 1622 ntAPPRIS P3 TSL 1 (best) BASIC23■■□□□ 1.27
Ift88Q61371 Cavin3-201ENSMUST00000047040 1662 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
Ift88Q61371 Skor2-201ENSMUST00000166956 3141 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
Ift88Q61371 Fance-202ENSMUST00000114801 1751 ntTSL 1 (best) BASIC23■■□□□ 1.27
Ift88Q61371 Tada1-201ENSMUST00000027846 2215 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
Ift88Q61371 Stbd1-201ENSMUST00000050952 1985 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
Ift88Q61371 Ezh2-203ENSMUST00000114616 2670 ntAPPRIS ALT1 TSL 5 BASIC22.99■■□□□ 1.27
Ift88Q61371 4430402I18Rik-201ENSMUST00000025872 2152 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
Ift88Q61371 Pard6a-203ENSMUST00000211888 1179 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
Ift88Q61371 Slc12a8-204ENSMUST00000121925 2656 ntAPPRIS P2 TSL 5 BASIC22.99■■□□□ 1.27
Ift88Q61371 Sirt1-203ENSMUST00000120239 4430 ntAPPRIS P3 TSL 5 BASIC22.99■■□□□ 1.27
Ift88Q61371 Atg3-201ENSMUST00000023343 2057 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
Ift88Q61371 Krt1-201ENSMUST00000023790 2445 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
Ift88Q61371 Fam193a-202ENSMUST00000180376 5536 ntAPPRIS P5 TSL 5 BASIC22.98■■□□□ 1.27
Retrieved 100 of 76,532 protein–RNA pairs in 7.9 ms