Protein–RNA interactions for Protein: Q61245

Col11a1, Collagen alpha-1(XI) chain, mousemouse

Predictions only

Length 1,804 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col11a1Q61245 Gsc-201ENSMUST00000021513 1268 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
Col11a1Q61245 Oaz1-201ENSMUST00000060987 1071 ntAPPRIS ALT1 TSL 5 BASIC24.16■■□□□ 1.46
Col11a1Q61245 Tmem171-201ENSMUST00000064347 1161 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
Col11a1Q61245 Marc1-201ENSMUST00000048462 2039 ntAPPRIS P2 TSL 1 (best) BASIC24.16■■□□□ 1.46
Col11a1Q61245 Ppa1-201ENSMUST00000020286 1364 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
Col11a1Q61245 Tcte2-210ENSMUST00000148430 1839 ntAPPRIS P2 TSL 1 (best) BASIC24.16■■□□□ 1.46
Col11a1Q61245 Acot5-202ENSMUST00000072505 1401 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
Col11a1Q61245 March8-204ENSMUST00000123405 2102 ntTSL 5 BASIC24.15■■□□□ 1.46
Col11a1Q61245 Ildr2-206ENSMUST00000194964 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC24.15■■□□□ 1.46
Col11a1Q61245 Mtf2-202ENSMUST00000112626 1968 ntTSL 5 BASIC24.15■■□□□ 1.46
Col11a1Q61245 Tor3a-208ENSMUST00000190607 453 ntTSL 3 BASIC24.15■■□□□ 1.46
Col11a1Q61245 6230400D17Rik-202ENSMUST00000224976 1019 ntBASIC24.15■■□□□ 1.46
Col11a1Q61245 Lemd2-201ENSMUST00000055117 2595 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
Col11a1Q61245 Tmpo-204ENSMUST00000099355 1953 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
Col11a1Q61245 Gm10493-201ENSMUST00000097270 612 ntBASIC24.14■■□□□ 1.46
Col11a1Q61245 C2cd4a-201ENSMUST00000054500 1395 ntAPPRIS P1 TSL 5 BASIC24.14■■□□□ 1.46
Col11a1Q61245 Creb1-204ENSMUST00000185594 1569 ntAPPRIS P1 TSL 5 BASIC24.14■■□□□ 1.46
Col11a1Q61245 Fzd9-201ENSMUST00000062572 2293 ntAPPRIS P1 BASIC24.14■■□□□ 1.46
Col11a1Q61245 Ubald2-201ENSMUST00000057676 1482 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
Col11a1Q61245 Tmbim6-202ENSMUST00000159209 944 ntAPPRIS P1 TSL 5 BASIC24.14■■□□□ 1.45
Col11a1Q61245 2510039O18Rik-201ENSMUST00000103232 2731 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
Col11a1Q61245 Shb-201ENSMUST00000061986 2244 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
Col11a1Q61245 Coq10a-201ENSMUST00000043211 1421 ntAPPRIS P2 TSL 5 BASIC24.13■■□□□ 1.45
Col11a1Q61245 Evl-201ENSMUST00000021689 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC24.13■■□□□ 1.45
Col11a1Q61245 Slc35a2-209ENSMUST00000208397 1374 ntAPPRIS ALT2 TSL 5 BASIC24.13■■□□□ 1.45
Col11a1Q61245 Gm27011-201ENSMUST00000182352 972 ntBASIC24.13■■□□□ 1.45
Col11a1Q61245 E030030I06Rik-201ENSMUST00000069372 876 ntAPPRIS ALT2 TSL 1 (best) BASIC24.13■■□□□ 1.45
Col11a1Q61245 Acbd6-202ENSMUST00000080138 993 ntTSL 1 (best) BASIC24.12■■□□□ 1.45
Col11a1Q61245 Chrac1-201ENSMUST00000089765 871 ntAPPRIS P2 TSL 1 (best) BASIC24.12■■□□□ 1.45
Col11a1Q61245 Nat14-204ENSMUST00000207687 1415 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
Col11a1Q61245 2410022M11Rik-201ENSMUST00000186474 1911 ntBASIC24.12■■□□□ 1.45
Col11a1Q61245 Egr4-201ENSMUST00000095759 2148 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
Col11a1Q61245 Gm43759-201ENSMUST00000196925 1261 ntBASIC24.12■■□□□ 1.45
Col11a1Q61245 Sohlh1-201ENSMUST00000076989 1289 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
Col11a1Q61245 Gm5577-201ENSMUST00000134600 1434 ntTSL 1 (best) BASIC24.12■■□□□ 1.45
Col11a1Q61245 Fam212b-202ENSMUST00000098273 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC24.11■■□□□ 1.45
Col11a1Q61245 Bag1-202ENSMUST00000108089 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC24.11■■□□□ 1.45
Col11a1Q61245 Zfp125-203ENSMUST00000208744 928 ntTSL 5 BASIC24.11■■□□□ 1.45
Col11a1Q61245 AC158777.2-201ENSMUST00000228787 398 ntAPPRIS P1 BASIC24.11■■□□□ 1.45
Col11a1Q61245 Krtap5-4-201ENSMUST00000061403 1046 ntAPPRIS P1 BASIC24.11■■□□□ 1.45
Col11a1Q61245 Kansl2-201ENSMUST00000023727 2311 ntAPPRIS ALT2 TSL 5 BASIC24.11■■□□□ 1.45
Col11a1Q61245 Nrep-202ENSMUST00000168890 2185 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
Col11a1Q61245 Gm44731-201ENSMUST00000203086 542 ntTSL 3 BASIC24.1■■□□□ 1.45
Col11a1Q61245 Arl10-201ENSMUST00000026988 1046 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
Col11a1Q61245 Ube2g2-204ENSMUST00000174510 2031 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
Col11a1Q61245 Gm10849-201ENSMUST00000100397 618 ntBASIC24.1■■□□□ 1.45
Col11a1Q61245 Gm12063-201ENSMUST00000148087 715 ntTSL 2 BASIC24.1■■□□□ 1.45
Col11a1Q61245 Gm37179-201ENSMUST00000194862 823 ntBASIC24.1■■□□□ 1.45
Col11a1Q61245 Fnta-201ENSMUST00000016138 1930 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
Col11a1Q61245 Eri3-201ENSMUST00000037127 1719 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
Col11a1Q61245 Siah1b-202ENSMUST00000071667 1712 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
Col11a1Q61245 Amh-201ENSMUST00000036016 1670 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
Col11a1Q61245 Dhps-201ENSMUST00000078665 1333 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
Col11a1Q61245 Gm27405-201ENSMUST00000184201 112 ntBASIC24.08■■□□□ 1.45
Col11a1Q61245 Gm6916-201ENSMUST00000205277 828 ntTSL 3 BASIC24.08■■□□□ 1.45
Col11a1Q61245 Hoxc8-201ENSMUST00000001703 1868 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.45
Col11a1Q61245 Slc25a3-203ENSMUST00000164505 1483 ntAPPRIS P2 TSL 5 BASIC24.08■■□□□ 1.44
Col11a1Q61245 Fbxl15-202ENSMUST00000177667 1243 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
Col11a1Q61245 Sorcs2-202ENSMUST00000070720 2089 ntTSL 1 (best) BASIC24.07■■□□□ 1.44
Col11a1Q61245 Slc36a1-201ENSMUST00000020499 1950 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
Col11a1Q61245 Spcs1-204ENSMUST00000226782 949 ntBASIC24.07■■□□□ 1.44
Col11a1Q61245 Emc9-201ENSMUST00000022828 855 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
Col11a1Q61245 Krtap5-3-201ENSMUST00000084414 1074 ntAPPRIS ALT2 TSL 5 BASIC24.07■■□□□ 1.44
Col11a1Q61245 Cbln1-201ENSMUST00000034076 2800 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
Col11a1Q61245 Gprc5b-204ENSMUST00000208394 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC24.07■■□□□ 1.44
Col11a1Q61245 Stac3-202ENSMUST00000160019 1581 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
Col11a1Q61245 Llph-202ENSMUST00000130198 1463 ntAPPRIS P1 TSL 3 BASIC24.06■■□□□ 1.44
Col11a1Q61245 P2rx2-202ENSMUST00000112478 1632 ntAPPRIS ALT2 TSL 1 (best) BASIC24.06■■□□□ 1.44
Col11a1Q61245 Rab3il1-202ENSMUST00000117641 2004 ntAPPRIS ALT2 TSL 1 (best) BASIC24.06■■□□□ 1.44
Col11a1Q61245 Aktip-201ENSMUST00000109609 1171 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
Col11a1Q61245 Wnt16-203ENSMUST00000148639 1168 ntTSL 1 (best) BASIC24.05■■□□□ 1.44
Col11a1Q61245 Rab26-201ENSMUST00000035797 1575 ntAPPRIS P2 TSL 1 (best) BASIC24.05■■□□□ 1.44
Col11a1Q61245 Homer2-201ENSMUST00000026922 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC24.05■■□□□ 1.44
Col11a1Q61245 Gm11613-201ENSMUST00000134427 1971 ntTSL 1 (best) BASIC24.05■■□□□ 1.44
Col11a1Q61245 Cept1-203ENSMUST00000121231 2121 ntAPPRIS P3 TSL 5 BASIC24.05■■□□□ 1.44
Col11a1Q61245 Psip1-202ENSMUST00000107214 1973 ntTSL 5 BASIC24.05■■□□□ 1.44
Col11a1Q61245 Gm28050-202ENSMUST00000131029 663 ntTSL 1 (best) BASIC24.05■■□□□ 1.44
Col11a1Q61245 Gm13067-201ENSMUST00000134236 404 ntTSL 5 BASIC24.05■■□□□ 1.44
Col11a1Q61245 Yjefn3-203ENSMUST00000180068 629 ntTSL 5 BASIC24.05■■□□□ 1.44
Col11a1Q61245 Gm26833-201ENSMUST00000180899 440 ntBASIC24.05■■□□□ 1.44
Col11a1Q61245 Otud5-205ENSMUST00000115668 2543 ntTSL 1 (best) BASIC24.05■■□□□ 1.44
Col11a1Q61245 Ip6k1-208ENSMUST00000176854 2251 ntTSL 1 (best) BASIC24.04■■□□□ 1.44
Col11a1Q61245 Kdm3b-204ENSMUST00000224715 2032 ntBASIC24.04■■□□□ 1.44
Col11a1Q61245 Arhgap8-207ENSMUST00000172307 1544 ntAPPRIS P1 TSL 5 BASIC24.04■■□□□ 1.44
Col11a1Q61245 Htra4-201ENSMUST00000084031 2180 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
Col11a1Q61245 Gm7160-202ENSMUST00000188519 1027 ntBASIC24.04■■□□□ 1.44
Col11a1Q61245 AC099934.2-201ENSMUST00000196389 70 ntBASIC24.04■■□□□ 1.44
Col11a1Q61245 AC156953.1-201ENSMUST00000196953 70 ntBASIC24.04■■□□□ 1.44
Col11a1Q61245 AC157822.2-201ENSMUST00000200291 70 ntBASIC24.04■■□□□ 1.44
Col11a1Q61245 Cmtm7-204ENSMUST00000216760 665 ntTSL 1 (best) BASIC24.04■■□□□ 1.44
Col11a1Q61245 Rfxap-201ENSMUST00000044373 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC24.04■■□□□ 1.44
Col11a1Q61245 Gm9970-201ENSMUST00000068997 558 ntAPPRIS P1 BASIC24.03■■□□□ 1.44
Col11a1Q61245 Rhno1-203ENSMUST00000112152 2015 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
Col11a1Q61245 Cdkn2a-201ENSMUST00000060501 852 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
Col11a1Q61245 Gm10129-202ENSMUST00000193100 1316 ntBASIC24.02■■□□□ 1.44
Col11a1Q61245 Ssbp1-205ENSMUST00000121360 1188 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
Col11a1Q61245 D630036H23Rik-201ENSMUST00000171007 940 ntAPPRIS P1 BASIC24.02■■□□□ 1.44
Col11a1Q61245 Cdc34b-202ENSMUST00000188741 1252 ntBASIC24.02■■□□□ 1.44
Col11a1Q61245 Gm42569-201ENSMUST00000200539 472 ntBASIC24.02■■□□□ 1.44
Col11a1Q61245 Cdc34-201ENSMUST00000020550 1266 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
Retrieved 100 of 76,532 protein–RNA pairs in 15.6 ms