Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Gm12504-201ENSMUST00000120860 2231 ntBASIC24.6■■□□□ 1.53
Limch1Q3UH68 Etf1-202ENSMUST00000180351 108 ntBASIC24.59■■□□□ 1.53
Limch1Q3UH68 Gm27253-201ENSMUST00000183670 367 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
Limch1Q3UH68 Gm5602-201ENSMUST00000146366 1763 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
Limch1Q3UH68 Nt5m-201ENSMUST00000102695 1306 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
Limch1Q3UH68 Plpp1-201ENSMUST00000016144 1598 ntAPPRIS P4 TSL 1 (best) BASIC24.59■■□□□ 1.53
Limch1Q3UH68 Msto1-201ENSMUST00000107494 2093 ntTSL 1 (best) BASIC24.58■■□□□ 1.53
Limch1Q3UH68 Nipa1-201ENSMUST00000052204 3183 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
Limch1Q3UH68 Hagh-201ENSMUST00000024974 1101 ntAPPRIS ALT1 TSL 5 BASIC24.58■■□□□ 1.53
Limch1Q3UH68 Sec61a2-201ENSMUST00000026926 756 ntTSL 5 BASIC24.58■■□□□ 1.53
Limch1Q3UH68 Bloc1s4-201ENSMUST00000071949 1273 ntAPPRIS P1 BASIC24.58■■□□□ 1.53
Limch1Q3UH68 Retreg2-208ENSMUST00000190240 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC24.58■■□□□ 1.53
Limch1Q3UH68 Plk5-202ENSMUST00000105351 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC24.58■■□□□ 1.52
Limch1Q3UH68 Rhob-201ENSMUST00000067384 2349 ntAPPRIS P1 BASIC24.57■■□□□ 1.52
Limch1Q3UH68 Kif1bp-201ENSMUST00000065887 2472 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
Limch1Q3UH68 D1Ertd622e-203ENSMUST00000149927 2703 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
Limch1Q3UH68 Barhl1-202ENSMUST00000113847 2160 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
Limch1Q3UH68 Tfg-201ENSMUST00000065515 1945 ntAPPRIS P2 TSL 1 (best) BASIC24.57■■□□□ 1.52
Limch1Q3UH68 Mbnl3-203ENSMUST00000114876 2243 ntAPPRIS P2 TSL 1 (best) BASIC24.57■■□□□ 1.52
Limch1Q3UH68 Kcnip1-203ENSMUST00000109340 1840 ntTSL 1 (best) BASIC24.56■■□□□ 1.52
Limch1Q3UH68 Pgk1-201ENSMUST00000081593 1825 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
Limch1Q3UH68 Fastk-201ENSMUST00000030800 1893 ntAPPRIS P2 TSL 1 (best) BASIC24.56■■□□□ 1.52
Limch1Q3UH68 Prdm13-201ENSMUST00000076206 2993 ntAPPRIS ALT2 TSL 2 BASIC24.56■■□□□ 1.52
Limch1Q3UH68 Serp2-201ENSMUST00000064517 748 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
Limch1Q3UH68 Psip1-202ENSMUST00000107214 1973 ntTSL 5 BASIC24.56■■□□□ 1.52
Limch1Q3UH68 Ppp1cb-206ENSMUST00000202078 383 ntTSL 5 BASIC24.55■■□□□ 1.52
Limch1Q3UH68 Acbd6-203ENSMUST00000097529 1255 ntTSL 1 (best) BASIC24.55■■□□□ 1.52
Limch1Q3UH68 Usp39-201ENSMUST00000070345 2244 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
Limch1Q3UH68 Dus1l-209ENSMUST00000167023 1909 ntAPPRIS P2 TSL 1 (best) BASIC24.55■■□□□ 1.52
Limch1Q3UH68 Dus1l-201ENSMUST00000026151 1930 ntAPPRIS ALT2 TSL 5 BASIC24.55■■□□□ 1.52
Limch1Q3UH68 Txnrd2-213ENSMUST00000178093 1785 ntTSL 5 BASIC24.54■■□□□ 1.52
Limch1Q3UH68 Gm43403-201ENSMUST00000198011 1786 ntBASIC24.54■■□□□ 1.52
Limch1Q3UH68 1700026D11Rik-201ENSMUST00000126910 2033 ntTSL 1 (best) BASIC24.54■■□□□ 1.52
Limch1Q3UH68 Auh-204ENSMUST00000120535 1647 ntTSL 1 (best) BASIC24.54■■□□□ 1.52
Limch1Q3UH68 Rab28-201ENSMUST00000031011 1635 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
Limch1Q3UH68 Lipt2-201ENSMUST00000032967 1663 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
Limch1Q3UH68 Zfand2b-204ENSMUST00000160439 1206 ntAPPRIS P1 TSL 5 BASIC24.54■■□□□ 1.52
Limch1Q3UH68 Bub3-205ENSMUST00000208571 747 ntTSL 5 BASIC24.54■■□□□ 1.52
Limch1Q3UH68 Sin3b-203ENSMUST00000212095 1257 ntTSL 1 (best) BASIC24.54■■□□□ 1.52
Limch1Q3UH68 AC117245.1-201ENSMUST00000215481 566 ntTSL 3 BASIC24.54■■□□□ 1.52
Limch1Q3UH68 Rnf187-201ENSMUST00000094151 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC24.54■■□□□ 1.52
Limch1Q3UH68 Ugp2-201ENSMUST00000060895 2044 ntTSL 1 (best) BASIC24.54■■□□□ 1.52
Limch1Q3UH68 Mau2-206ENSMUST00000212451 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC24.53■■□□□ 1.52
Limch1Q3UH68 Gimap1-201ENSMUST00000054368 1493 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
Limch1Q3UH68 Stat5b-201ENSMUST00000004143 5062 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
Limch1Q3UH68 Tmem120b-202ENSMUST00000111619 1256 ntTSL 1 (best) BASIC24.53■■□□□ 1.52
Limch1Q3UH68 Dpy19l1-206ENSMUST00000170356 4715 ntAPPRIS P1 TSL 5 BASIC24.53■■□□□ 1.52
Limch1Q3UH68 Rgs6-202ENSMUST00000161801 2141 ntTSL 1 (best) BASIC24.53■■□□□ 1.52
Limch1Q3UH68 Rsrc1-202ENSMUST00000065047 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC24.52■■□□□ 1.52
Limch1Q3UH68 Hmg20b-203ENSMUST00000105324 1540 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
Limch1Q3UH68 Efna3-203ENSMUST00000200436 742 ntAPPRIS ALT2 TSL 5 BASIC24.52■■□□□ 1.52
Limch1Q3UH68 2700081O15Rik-202ENSMUST00000159348 4989 ntAPPRIS P1 TSL 5 BASIC24.52■■□□□ 1.52
Limch1Q3UH68 Aurkb-202ENSMUST00000108666 1831 ntAPPRIS P1 TSL 5 BASIC24.51■■□□□ 1.51
Limch1Q3UH68 Acsl6-209ENSMUST00000108904 2594 ntTSL 1 (best) BASIC24.51■■□□□ 1.51
Limch1Q3UH68 Mad2l2-201ENSMUST00000030860 1535 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
Limch1Q3UH68 Ankrd54-201ENSMUST00000040676 1904 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
Limch1Q3UH68 Map3k15-201ENSMUST00000033665 4348 ntAPPRIS P1 TSL 5 BASIC24.51■■□□□ 1.51
Limch1Q3UH68 Picalm-205ENSMUST00000207225 3489 ntTSL 1 (best) BASIC24.51■■□□□ 1.51
Limch1Q3UH68 1810026B05Rik-203ENSMUST00000184587 5738 ntTSL 1 (best) BASIC24.5■■□□□ 1.51
Limch1Q3UH68 Pfdn4-204ENSMUST00000109148 736 ntTSL 3 BASIC24.5■■□□□ 1.51
Limch1Q3UH68 Ltb-203ENSMUST00000173600 905 ntAPPRIS ALT2 TSL 5 BASIC24.5■■□□□ 1.51
Limch1Q3UH68 Tmem192-203ENSMUST00000209852 1193 ntTSL 1 (best) BASIC24.5■■□□□ 1.51
Limch1Q3UH68 AC158990.1-201ENSMUST00000221450 2016 ntBASIC24.5■■□□□ 1.51
Limch1Q3UH68 Srsf12-201ENSMUST00000067864 2939 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
Limch1Q3UH68 Nkx2-5-201ENSMUST00000015723 1525 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
Limch1Q3UH68 AC164883.3-201ENSMUST00000227396 1774 ntBASIC24.49■■□□□ 1.51
Limch1Q3UH68 Shisa5-201ENSMUST00000026737 1834 ntAPPRIS P3 TSL 1 (best) BASIC24.49■■□□□ 1.51
Limch1Q3UH68 Tbc1d24-201ENSMUST00000024931 4894 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
Limch1Q3UH68 Sox2-201ENSMUST00000099151 2057 ntAPPRIS P1 BASIC24.49■■□□□ 1.51
Limch1Q3UH68 Slc9a7-202ENSMUST00000115393 2152 ntAPPRIS ALT2 TSL 1 (best) BASIC24.49■■□□□ 1.51
Limch1Q3UH68 Rps2-ps6-201ENSMUST00000095471 855 ntBASIC24.49■■□□□ 1.51
Limch1Q3UH68 Pkig-202ENSMUST00000099105 640 ntAPPRIS P1 TSL 2 BASIC24.49■■□□□ 1.51
Limch1Q3UH68 Ewsr1-205ENSMUST00000102930 2174 ntAPPRIS ALT2 TSL 5 BASIC24.49■■□□□ 1.51
Limch1Q3UH68 Rbfox3-206ENSMUST00000120061 2150 ntAPPRIS ALT2 TSL 5 BASIC24.49■■□□□ 1.51
Limch1Q3UH68 Gm13429-202ENSMUST00000128242 692 ntTSL 3 BASIC24.48■■□□□ 1.51
Limch1Q3UH68 H3f3a-207ENSMUST00000162814 724 ntAPPRIS P2 TSL 3 BASIC24.48■■□□□ 1.51
Limch1Q3UH68 1700051O22Rik-202ENSMUST00000195451 638 ntBASIC24.48■■□□□ 1.51
Limch1Q3UH68 Gm5131-201ENSMUST00000212776 1238 ntBASIC24.48■■□□□ 1.51
Limch1Q3UH68 Kcnip2-201ENSMUST00000026247 1203 ntAPPRIS ALT1 TSL 5 BASIC24.48■■□□□ 1.51
Limch1Q3UH68 Abhd12-201ENSMUST00000056149 1999 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
Limch1Q3UH68 Snapin-203ENSMUST00000149884 1928 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
Limch1Q3UH68 Kti12-201ENSMUST00000102738 1629 ntAPPRIS P1 BASIC24.47■■□□□ 1.51
Limch1Q3UH68 Mrgbp-201ENSMUST00000029085 1510 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
Limch1Q3UH68 Selenof-201ENSMUST00000082437 1514 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
Limch1Q3UH68 Gm16464-201ENSMUST00000117815 1095 ntBASIC24.47■■□□□ 1.51
Limch1Q3UH68 Jtb-201ENSMUST00000029546 1101 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
Limch1Q3UH68 Nkx2-2-201ENSMUST00000067075 2120 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
Limch1Q3UH68 Spsb3-209ENSMUST00000168265 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC24.47■■□□□ 1.51
Limch1Q3UH68 Homer2-201ENSMUST00000026922 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC24.47■■□□□ 1.51
Limch1Q3UH68 Zfp629-208ENSMUST00000151107 583 ntTSL 3 BASIC24.46■■□□□ 1.51
Limch1Q3UH68 Pstpip1-201ENSMUST00000059206 1863 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
Limch1Q3UH68 Phf12-202ENSMUST00000108360 3047 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
Limch1Q3UH68 Cnnm1-202ENSMUST00000223787 2931 ntAPPRIS ALT2 BASIC24.46■■□□□ 1.51
Limch1Q3UH68 Sugct-201ENSMUST00000068545 1701 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
Limch1Q3UH68 Cers5-201ENSMUST00000023762 2096 ntAPPRIS P2 TSL 1 (best) BASIC24.46■■□□□ 1.51
Limch1Q3UH68 Idh3a-205ENSMUST00000217484 2580 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
Limch1Q3UH68 Gm38160-201ENSMUST00000193090 2499 ntBASIC24.45■■□□□ 1.51
Limch1Q3UH68 Ncoa7-206ENSMUST00000215725 1445 ntTSL 1 (best) BASIC24.45■■□□□ 1.51
Limch1Q3UH68 Setd4-201ENSMUST00000023669 1816 ntAPPRIS P1 TSL 5 BASIC24.45■■□□□ 1.5
Limch1Q3UH68 Tshz1-201ENSMUST00000060303 5656 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
Retrieved 100 of 76,532 protein–RNA pairs in 34.9 ms