Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Morn4-201ENSMUST00000051772 1816 ntAPPRIS P1 TSL 1 (best) BASIC27.13■■□□□ 1.93
Ddb1Q3U1J4 Gm28050-202ENSMUST00000131029 663 ntTSL 1 (best) BASIC27.13■■□□□ 1.93
Ddb1Q3U1J4 Wnt16-203ENSMUST00000148639 1168 ntTSL 1 (best) BASIC27.13■■□□□ 1.93
Ddb1Q3U1J4 Gfra4-201ENSMUST00000028787 909 ntAPPRIS P3 TSL 1 (best) BASIC27.13■■□□□ 1.93
Ddb1Q3U1J4 Siah1b-202ENSMUST00000071667 1712 ntAPPRIS P1 TSL 1 (best) BASIC27.13■■□□□ 1.93
Ddb1Q3U1J4 2410022M11Rik-201ENSMUST00000186474 1911 ntBASIC27.12■■□□□ 1.93
Ddb1Q3U1J4 Gm27405-201ENSMUST00000184201 112 ntBASIC27.12■■□□□ 1.93
Ddb1Q3U1J4 Rdh14-201ENSMUST00000020947 1480 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
Ddb1Q3U1J4 Tcte2-210ENSMUST00000148430 1839 ntAPPRIS P2 TSL 1 (best) BASIC27.11■■□□□ 1.93
Ddb1Q3U1J4 E130309D02Rik-201ENSMUST00000046418 2208 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
Ddb1Q3U1J4 Fnta-201ENSMUST00000016138 1930 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
Ddb1Q3U1J4 Txnrd2-214ENSMUST00000205679 1866 ntTSL 5 BASIC27.1■■□□□ 1.93
Ddb1Q3U1J4 Manf-202ENSMUST00000159283 2247 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
Ddb1Q3U1J4 March8-204ENSMUST00000123405 2102 ntTSL 5 BASIC27.1■■□□□ 1.93
Ddb1Q3U1J4 Coq10a-201ENSMUST00000043211 1421 ntAPPRIS P2 TSL 5 BASIC27.1■■□□□ 1.93
Ddb1Q3U1J4 Cdc34b-202ENSMUST00000188741 1252 ntBASIC27.1■■□□□ 1.93
Ddb1Q3U1J4 Gm42569-201ENSMUST00000200539 472 ntBASIC27.1■■□□□ 1.93
Ddb1Q3U1J4 Cdc34-201ENSMUST00000020550 1266 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
Ddb1Q3U1J4 Cdc34b-201ENSMUST00000021240 1233 ntAPPRIS P1 BASIC27.1■■□□□ 1.93
Ddb1Q3U1J4 AC112142.1-201ENSMUST00000228796 918 ntBASIC27.1■■□□□ 1.93
Ddb1Q3U1J4 4930507D05Rik-201ENSMUST00000181110 1834 ntAPPRIS P1 BASIC27.1■■□□□ 1.93
Ddb1Q3U1J4 Homer2-201ENSMUST00000026922 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC27.1■■□□□ 1.93
Ddb1Q3U1J4 Gprc5b-204ENSMUST00000208394 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC27.09■■□□□ 1.93
Ddb1Q3U1J4 Zfp125-203ENSMUST00000208744 928 ntTSL 5 BASIC27.09■■□□□ 1.93
Ddb1Q3U1J4 Gm10493-201ENSMUST00000097270 612 ntBASIC27.09■■□□□ 1.93
Ddb1Q3U1J4 Ppa1-201ENSMUST00000020286 1364 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
Ddb1Q3U1J4 Gm13067-201ENSMUST00000134236 404 ntTSL 5 BASIC27.08■■□□□ 1.93
Ddb1Q3U1J4 Hist2h3c2-201ENSMUST00000167403 1020 ntAPPRIS P1 BASIC27.08■■□□□ 1.93
Ddb1Q3U1J4 Anapc13-204ENSMUST00000190279 589 ntAPPRIS P1 TSL 1 (best) BASIC27.08■■□□□ 1.93
Ddb1Q3U1J4 Gm43759-201ENSMUST00000196925 1261 ntBASIC27.08■■□□□ 1.93
Ddb1Q3U1J4 Arl10-201ENSMUST00000026988 1046 ntAPPRIS P1 TSL 1 (best) BASIC27.08■■□□□ 1.93
Ddb1Q3U1J4 D830025C05Rik-201ENSMUST00000059474 976 ntBASIC27.08■■□□□ 1.93
Ddb1Q3U1J4 Ildr2-206ENSMUST00000194964 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC27.08■■□□□ 1.93
Ddb1Q3U1J4 Nat14-204ENSMUST00000207687 1415 ntAPPRIS P1 TSL 1 (best) BASIC27.07■■□□□ 1.92
Ddb1Q3U1J4 Ei24-202ENSMUST00000163192 2309 ntAPPRIS P1 TSL 1 (best) BASIC27.07■■□□□ 1.92
Ddb1Q3U1J4 Gm10941-201ENSMUST00000105408 708 ntTSL 1 (best) BASIC27.07■■□□□ 1.92
Ddb1Q3U1J4 1700012B09Rik-204ENSMUST00000191047 654 ntAPPRIS ALT2 TSL 3 BASIC27.07■■□□□ 1.92
Ddb1Q3U1J4 Ube2g2-204ENSMUST00000174510 2031 ntAPPRIS P1 TSL 1 (best) BASIC27.07■■□□□ 1.92
Ddb1Q3U1J4 Bean1-205ENSMUST00000212979 2131 ntAPPRIS P4 TSL 5 BASIC27.07■■□□□ 1.92
Ddb1Q3U1J4 Psip1-202ENSMUST00000107214 1973 ntTSL 5 BASIC27.06■■□□□ 1.92
Ddb1Q3U1J4 Marc1-201ENSMUST00000048462 2039 ntAPPRIS P2 TSL 1 (best) BASIC27.06■■□□□ 1.92
Ddb1Q3U1J4 Hist1h2bp-201ENSMUST00000102982 469 ntAPPRIS P1 BASIC27.06■■□□□ 1.92
Ddb1Q3U1J4 Gng2-202ENSMUST00000159028 458 ntAPPRIS P1 TSL 2 BASIC27.06■■□□□ 1.92
Ddb1Q3U1J4 Rell2-204ENSMUST00000163591 1057 ntTSL 5 BASIC27.06■■□□□ 1.92
Ddb1Q3U1J4 Egr4-201ENSMUST00000095759 2148 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
Ddb1Q3U1J4 Shb-201ENSMUST00000061986 2244 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
Ddb1Q3U1J4 Slc25a3-203ENSMUST00000164505 1483 ntAPPRIS P2 TSL 5 BASIC27.06■■□□□ 1.92
Ddb1Q3U1J4 Ubald2-201ENSMUST00000057676 1482 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
Ddb1Q3U1J4 Slc16a11-211ENSMUST00000171032 1754 ntAPPRIS P1 TSL 5 BASIC27.05■■□□□ 1.92
Ddb1Q3U1J4 Mast2-203ENSMUST00000106485 5705 ntAPPRIS ALT2 TSL 1 (best) BASIC27.05■■□□□ 1.92
Ddb1Q3U1J4 Mast2-204ENSMUST00000106486 5723 ntAPPRIS P4 TSL 1 (best) BASIC27.05■■□□□ 1.92
Ddb1Q3U1J4 Ssbp1-205ENSMUST00000121360 1188 ntAPPRIS P1 TSL 1 (best) BASIC27.05■■□□□ 1.92
Ddb1Q3U1J4 Yjefn3-203ENSMUST00000180068 629 ntTSL 5 BASIC27.05■■□□□ 1.92
Ddb1Q3U1J4 Gm45890-202ENSMUST00000212188 1052 ntTSL 1 (best) BASIC27.05■■□□□ 1.92
Ddb1Q3U1J4 Ankrd37-201ENSMUST00000053558 927 ntAPPRIS P1 TSL 1 (best) BASIC27.05■■□□□ 1.92
Ddb1Q3U1J4 Gm9970-201ENSMUST00000068997 558 ntAPPRIS P1 BASIC27.05■■□□□ 1.92
Ddb1Q3U1J4 Amh-201ENSMUST00000036016 1670 ntAPPRIS P1 TSL 1 (best) BASIC27.05■■□□□ 1.92
Ddb1Q3U1J4 Hgh1-201ENSMUST00000023213 1959 ntAPPRIS P1 TSL 1 (best) BASIC27.04■■□□□ 1.92
Ddb1Q3U1J4 Rfxap-201ENSMUST00000044373 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC27.04■■□□□ 1.92
Ddb1Q3U1J4 Ccdc85b-201ENSMUST00000179549 609 ntAPPRIS P1 BASIC27.04■■□□□ 1.92
Ddb1Q3U1J4 Gabpb1-203ENSMUST00000103226 1338 ntTSL 1 (best) BASIC27.04■■□□□ 1.92
Ddb1Q3U1J4 Pla2g12a-201ENSMUST00000029629 1561 ntAPPRIS P1 TSL 1 (best) BASIC27.04■■□□□ 1.92
Ddb1Q3U1J4 Ccdc142-201ENSMUST00000101254 2317 ntAPPRIS P1 TSL 5 BASIC27.04■■□□□ 1.92
Ddb1Q3U1J4 Zfp91-201ENSMUST00000038627 5531 ntAPPRIS P1 TSL 1 (best) BASIC27.03■■□□□ 1.92
Ddb1Q3U1J4 Gm26833-201ENSMUST00000180899 440 ntBASIC27.03■■□□□ 1.92
Ddb1Q3U1J4 Gm6916-201ENSMUST00000205277 828 ntTSL 3 BASIC27.03■■□□□ 1.92
Ddb1Q3U1J4 Fzd9-201ENSMUST00000062572 2293 ntAPPRIS P1 BASIC27.03■■□□□ 1.92
Ddb1Q3U1J4 Tfeb-202ENSMUST00000086932 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC27.03■■□□□ 1.92
Ddb1Q3U1J4 Slc36a1-201ENSMUST00000020499 1950 ntAPPRIS P1 TSL 1 (best) BASIC27.02■■□□□ 1.92
Ddb1Q3U1J4 Tor3a-208ENSMUST00000190607 453 ntTSL 3 BASIC27.02■■□□□ 1.92
Ddb1Q3U1J4 Gm36210-201ENSMUST00000210663 1279 ntAPPRIS P1 TSL 5 BASIC27.02■■□□□ 1.92
Ddb1Q3U1J4 Gsc-201ENSMUST00000021513 1268 ntAPPRIS P1 TSL 1 (best) BASIC27.02■■□□□ 1.92
Ddb1Q3U1J4 Cntln-202ENSMUST00000102819 2239 ntAPPRIS P3 TSL 1 (best) BASIC27.02■■□□□ 1.92
Ddb1Q3U1J4 Sorcs2-202ENSMUST00000070720 2089 ntTSL 1 (best) BASIC27.02■■□□□ 1.92
Ddb1Q3U1J4 Gm4430-201ENSMUST00000192413 1943 ntBASIC27.02■■□□□ 1.92
Ddb1Q3U1J4 Kdelr3-201ENSMUST00000010974 1414 ntAPPRIS P1 TSL 1 (best) BASIC27.01■■□□□ 1.91
Ddb1Q3U1J4 Hoxc8-201ENSMUST00000001703 1868 ntAPPRIS P1 TSL 1 (best) BASIC27.01■■□□□ 1.91
Ddb1Q3U1J4 Fam212b-202ENSMUST00000098273 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC27.01■■□□□ 1.91
Ddb1Q3U1J4 Tmpo-204ENSMUST00000099355 1953 ntTSL 1 (best) BASIC27■■□□□ 1.91
Ddb1Q3U1J4 Atf5-201ENSMUST00000047356 1816 ntAPPRIS P1 TSL 1 (best) BASIC27■■□□□ 1.91
Ddb1Q3U1J4 G630030J09Rik-201ENSMUST00000181958 2135 ntTSL 1 (best) BASIC27■■□□□ 1.91
Ddb1Q3U1J4 Gm43060-201ENSMUST00000200621 289 ntBASIC27■■□□□ 1.91
Ddb1Q3U1J4 Gm44731-201ENSMUST00000203086 542 ntTSL 3 BASIC27■■□□□ 1.91
Ddb1Q3U1J4 Gm7143-201ENSMUST00000222811 859 ntBASIC27■■□□□ 1.91
Ddb1Q3U1J4 Hist1h2ao-201ENSMUST00000091745 480 ntAPPRIS P1 BASIC27■■□□□ 1.91
Ddb1Q3U1J4 Tmem260-208ENSMUST00000226400 2281 ntAPPRIS ALT2 BASIC27■■□□□ 1.91
Ddb1Q3U1J4 Dnajb2-206ENSMUST00000187058 1732 ntTSL 1 (best) BASIC26.99■■□□□ 1.91
Ddb1Q3U1J4 P2rx2-202ENSMUST00000112478 1632 ntAPPRIS ALT2 TSL 1 (best) BASIC26.99■■□□□ 1.91
Ddb1Q3U1J4 Gm10849-201ENSMUST00000100397 618 ntBASIC26.99■■□□□ 1.91
Ddb1Q3U1J4 Gm42642-201ENSMUST00000200683 355 ntBASIC26.99■■□□□ 1.91
Ddb1Q3U1J4 Rnaseh1-201ENSMUST00000020959 1455 ntAPPRIS P1 TSL 1 (best) BASIC26.99■■□□□ 1.91
Ddb1Q3U1J4 Ccdc88a-202ENSMUST00000109477 1716 ntTSL 2 BASIC26.99■■□□□ 1.91
Ddb1Q3U1J4 Mtf2-202ENSMUST00000112626 1968 ntTSL 5 BASIC26.98■■□□□ 1.91
Ddb1Q3U1J4 Mpig6b-202ENSMUST00000174190 729 ntAPPRIS P1 TSL 1 (best) BASIC26.98■■□□□ 1.91
Ddb1Q3U1J4 Gm7160-202ENSMUST00000188519 1027 ntBASIC26.98■■□□□ 1.91
Ddb1Q3U1J4 AC133650.2-201ENSMUST00000217036 607 ntTSL 3 BASIC26.98■■□□□ 1.91
Ddb1Q3U1J4 Kdm3b-204ENSMUST00000224715 2032 ntBASIC26.98■■□□□ 1.91
Ddb1Q3U1J4 Creb1-204ENSMUST00000185594 1569 ntAPPRIS P1 TSL 5 BASIC26.97■■□□□ 1.91
Ddb1Q3U1J4 Rab26-201ENSMUST00000035797 1575 ntAPPRIS P2 TSL 1 (best) BASIC26.97■■□□□ 1.91
Ddb1Q3U1J4 Mcub-201ENSMUST00000029624 1318 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91
Retrieved 100 of 76,532 protein–RNA pairs in 15.3 ms