Protein–RNA interactions for Protein: Q9QXK7

Cpsf3, Cleavage and polyadenylation specificity factor subunit 3, mousemouse

Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf3Q9QXK7 Naaa-201ENSMUST00000113102 2414 ntAPPRIS P3 TSL 1 (best) BASIC13.4□□□□□ -0.26
Cpsf3Q9QXK7 Ace-202ENSMUST00000001964 2418 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
Cpsf3Q9QXK7 F630040K05Rik-202ENSMUST00000180558 2633 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
Cpsf3Q9QXK7 Ero1lb-201ENSMUST00000071973 4239 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Cpsf3Q9QXK7 Dgcr14-201ENSMUST00000003621 2819 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.27
Cpsf3Q9QXK7 Olfr288-202ENSMUST00000165379 2083 ntAPPRIS P1 TSL 2 BASIC13.4□□□□□ -0.27
Cpsf3Q9QXK7 Plekhg2-203ENSMUST00000121085 4649 ntAPPRIS ALT2 TSL 2 BASIC13.4□□□□□ -0.27
Cpsf3Q9QXK7 Abca7-203ENSMUST00000171637 6638 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
Cpsf3Q9QXK7 Prex1-203ENSMUST00000109246 2386 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Cpsf3Q9QXK7 Nccrp1-201ENSMUST00000057974 1531 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Cpsf3Q9QXK7 Dbn1-201ENSMUST00000021950 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
Cpsf3Q9QXK7 Hexim2-201ENSMUST00000062530 1910 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Cpsf3Q9QXK7 Skap1-202ENSMUST00000100519 1100 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Cpsf3Q9QXK7 Prr29-202ENSMUST00000106816 771 ntAPPRIS P2 TSL 1 (best) BASIC13.39□□□□□ -0.27
Cpsf3Q9QXK7 Sncb-202ENSMUST00000134110 722 ntAPPRIS P1 TSL 3 BASIC13.39□□□□□ -0.27
Cpsf3Q9QXK7 Gm20470-201ENSMUST00000174654 331 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Cpsf3Q9QXK7 Gm26740-201ENSMUST00000180456 358 ntTSL 3 BASIC13.39□□□□□ -0.27
Cpsf3Q9QXK7 Ip6k2-204ENSMUST00000192307 1191 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Cpsf3Q9QXK7 Pex1-208ENSMUST00000195894 528 ntTSL 3 BASIC13.39□□□□□ -0.27
Cpsf3Q9QXK7 Gm44958-201ENSMUST00000203734 736 ntBASIC13.39□□□□□ -0.27
Cpsf3Q9QXK7 Gm6082-201ENSMUST00000215204 454 ntBASIC13.39□□□□□ -0.27
Cpsf3Q9QXK7 AC154222.2-201ENSMUST00000225848 607 ntBASIC13.39□□□□□ -0.27
Cpsf3Q9QXK7 H2-M10.2-201ENSMUST00000023845 1113 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Cpsf3Q9QXK7 1110017D15Rik-201ENSMUST00000030152 1114 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
Cpsf3Q9QXK7 Lsm7-201ENSMUST00000035775 468 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Cpsf3Q9QXK7 Prss34-201ENSMUST00000037453 1216 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Cpsf3Q9QXK7 Bckdhb-205ENSMUST00000190166 1398 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
Cpsf3Q9QXK7 Ptp4a1-201ENSMUST00000027232 4145 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Cpsf3Q9QXK7 Gm44929-202ENSMUST00000209134 1653 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Cpsf3Q9QXK7 Tspan32-202ENSMUST00000075172 1876 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
Cpsf3Q9QXK7 Fitm2-201ENSMUST00000109418 3967 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Cpsf3Q9QXK7 E230029C05Rik-202ENSMUST00000207458 2445 ntTSL 5 BASIC13.39□□□□□ -0.27
Cpsf3Q9QXK7 Gm43721-201ENSMUST00000199677 2313 ntBASIC13.39□□□□□ -0.27
Cpsf3Q9QXK7 Rabep2-202ENSMUST00000106407 2234 ntAPPRIS P2 TSL 1 (best) BASIC13.39□□□□□ -0.27
Cpsf3Q9QXK7 Mark2-215ENSMUST00000168872 2124 ntAPPRIS ALT2 TSL 5 BASIC13.39□□□□□ -0.27
Cpsf3Q9QXK7 Zcchc18-202ENSMUST00000101227 2045 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Cpsf3Q9QXK7 Pax7-202ENSMUST00000174681 1725 ntAPPRIS ALT1 TSL 5 BASIC13.39□□□□□ -0.27
Cpsf3Q9QXK7 Kdm4a-202ENSMUST00000097911 4550 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
Cpsf3Q9QXK7 Gm36445-201ENSMUST00000209344 1432 ntTSL 5 BASIC13.39□□□□□ -0.27
Cpsf3Q9QXK7 Shbg-201ENSMUST00000005334 1419 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Cpsf3Q9QXK7 Picalm-213ENSMUST00000208742 3361 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
Cpsf3Q9QXK7 Usp13-201ENSMUST00000072312 7580 ntAPPRIS P2 TSL 1 (best) BASIC13.38□□□□□ -0.27
Cpsf3Q9QXK7 Syncrip-210ENSMUST00000174391 6257 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Cpsf3Q9QXK7 Stk25-201ENSMUST00000027498 4249 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Cpsf3Q9QXK7 Arhgap25-202ENSMUST00000101197 2493 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Cpsf3Q9QXK7 AC159195.1-201ENSMUST00000225867 2086 ntBASIC13.38□□□□□ -0.27
Cpsf3Q9QXK7 Sec61g-203ENSMUST00000109643 1862 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Cpsf3Q9QXK7 Slc4a2-202ENSMUST00000115047 4264 ntAPPRIS ALT2 TSL 5 BASIC13.38□□□□□ -0.27
Cpsf3Q9QXK7 Pfkfb3-220ENSMUST00000192949 4801 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Cpsf3Q9QXK7 Zfp369-203ENSMUST00000130799 1580 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Cpsf3Q9QXK7 Slc3a2-207ENSMUST00000206598 1393 ntTSL 2 BASIC13.38□□□□□ -0.27
Cpsf3Q9QXK7 Gm14109-201ENSMUST00000118814 309 ntBASIC13.38□□□□□ -0.27
Cpsf3Q9QXK7 9430021M05Rik-201ENSMUST00000145985 1201 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Cpsf3Q9QXK7 Polr2i-201ENSMUST00000019882 819 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Cpsf3Q9QXK7 Pex3-201ENSMUST00000019945 2129 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Cpsf3Q9QXK7 Vmn1r197-201ENSMUST00000091734 897 ntAPPRIS P1 BASIC13.38□□□□□ -0.27
Cpsf3Q9QXK7 Kcnn2-205ENSMUST00000183850 3546 ntAPPRIS P2 TSL 1 (best) BASIC13.38□□□□□ -0.27
Cpsf3Q9QXK7 C1qtnf9-201ENSMUST00000025940 1903 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Cpsf3Q9QXK7 Zfp536-201ENSMUST00000056338 4621 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Cpsf3Q9QXK7 Gns-201ENSMUST00000040344 3855 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Cpsf3Q9QXK7 0610040F04Rik-201ENSMUST00000137478 1734 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Cpsf3Q9QXK7 Acin1-216ENSMUST00000141453 2381 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Cpsf3Q9QXK7 Lims1-202ENSMUST00000020078 4327 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Cpsf3Q9QXK7 Armcx1-202ENSMUST00000051256 2253 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Cpsf3Q9QXK7 Ntrk2-208ENSMUST00000225583 2719 ntBASIC13.38□□□□□ -0.27
Cpsf3Q9QXK7 Ssh1-202ENSMUST00000112298 5584 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
Cpsf3Q9QXK7 Ccnk-201ENSMUST00000101055 2627 ntAPPRIS P1 TSL 5 BASIC13.38□□□□□ -0.27
Cpsf3Q9QXK7 5830411N06Rik-202ENSMUST00000093984 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
Cpsf3Q9QXK7 Ptgr2-208ENSMUST00000147363 1869 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Cpsf3Q9QXK7 Igf1-204ENSMUST00000121161 1344 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Cpsf3Q9QXK7 Phyhd1-212ENSMUST00000154647 1678 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Cpsf3Q9QXK7 Nbeal2-211ENSMUST00000196488 8599 ntAPPRIS ALT2 TSL 5 BASIC13.37□□□□□ -0.27
Cpsf3Q9QXK7 Trim50-202ENSMUST00000111180 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
Cpsf3Q9QXK7 Cipc-211ENSMUST00000191463 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
Cpsf3Q9QXK7 Sugp2-201ENSMUST00000093458 3874 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Cpsf3Q9QXK7 Tmem104-202ENSMUST00000100235 4561 ntAPPRIS ALT1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Cpsf3Q9QXK7 Tmem104-201ENSMUST00000061450 4564 ntAPPRIS P2 TSL 1 (best) BASIC13.37□□□□□ -0.27
Cpsf3Q9QXK7 C130012C08Rik-201ENSMUST00000194287 3665 ntBASIC13.37□□□□□ -0.27
Cpsf3Q9QXK7 Rassf8-201ENSMUST00000032388 1733 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Cpsf3Q9QXK7 Mapk3-203ENSMUST00000091328 1716 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Cpsf3Q9QXK7 Islr-202ENSMUST00000168864 2076 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Cpsf3Q9QXK7 Apoo-204ENSMUST00000113898 784 ntAPPRIS P1 TSL 3 BASIC13.37□□□□□ -0.27
Cpsf3Q9QXK7 Retn-201ENSMUST00000012849 874 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Cpsf3Q9QXK7 Gm13061-201ENSMUST00000137962 664 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Cpsf3Q9QXK7 Asb17os-201ENSMUST00000156292 496 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Cpsf3Q9QXK7 Gm9630-201ENSMUST00000178304 885 ntBASIC13.37□□□□□ -0.27
Cpsf3Q9QXK7 Gm27046-201ENSMUST00000182160 463 ntBASIC13.37□□□□□ -0.27
Cpsf3Q9QXK7 Gm38000-201ENSMUST00000192390 1215 ntBASIC13.37□□□□□ -0.27
Cpsf3Q9QXK7 Gm38241-201ENSMUST00000192641 898 ntBASIC13.37□□□□□ -0.27
Cpsf3Q9QXK7 AA914427-201ENSMUST00000193194 1166 ntBASIC13.37□□□□□ -0.27
Cpsf3Q9QXK7 Gm38317-201ENSMUST00000195564 343 ntBASIC13.37□□□□□ -0.27
Cpsf3Q9QXK7 Gm42797-201ENSMUST00000197573 494 ntTSL 3 BASIC13.37□□□□□ -0.27
Cpsf3Q9QXK7 4930404N11Rik-201ENSMUST00000020456 691 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Cpsf3Q9QXK7 Gm13097-201ENSMUST00000210722 397 ntBASIC13.37□□□□□ -0.27
Cpsf3Q9QXK7 AC164612.1-201ENSMUST00000216699 517 ntTSL 5 BASIC13.37□□□□□ -0.27
Cpsf3Q9QXK7 Gm40437-201ENSMUST00000222338 767 ntTSL 5 BASIC13.37□□□□□ -0.27
Cpsf3Q9QXK7 Ccng2-202ENSMUST00000121127 2570 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Cpsf3Q9QXK7 Ntsr1-202ENSMUST00000170448 2594 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Cpsf3Q9QXK7 Sufu-204ENSMUST00000120778 1850 ntTSL 2 BASIC13.37□□□□□ -0.27
Cpsf3Q9QXK7 Mroh1-204ENSMUST00000159218 5085 ntAPPRIS ALT2 TSL 5 BASIC13.37□□□□□ -0.27
Retrieved 100 of 76,532 protein–RNA pairs in 51.9 ms