Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 0610010K14Rik-203ENSMUST00000100950 545 ntTSL 2 BASIC13.11□□□□□ -0.31
Ddx56Q9D0R4 Toe1-202ENSMUST00000106455 1209 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Ddx56Q9D0R4 Foxp1-205ENSMUST00000113324 2121 ntTSL 5 BASIC13.11□□□□□ -0.31
Ddx56Q9D0R4 Foxp1-207ENSMUST00000113328 2121 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Ddx56Q9D0R4 Mir1247-201ENSMUST00000116706 82 ntBASIC13.11□□□□□ -0.31
Ddx56Q9D0R4 Ccdc169-203ENSMUST00000118963 740 ntTSL 3 BASIC13.11□□□□□ -0.31
Ddx56Q9D0R4 Kcnip4-207ENSMUST00000176191 2116 ntTSL 5 BASIC13.11□□□□□ -0.31
Ddx56Q9D0R4 Foxp1-228ENSMUST00000177307 2121 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Ddx56Q9D0R4 1600014C10Rik-203ENSMUST00000177983 403 ntTSL 2 BASIC13.11□□□□□ -0.31
Ddx56Q9D0R4 Gm18304-201ENSMUST00000189162 546 ntBASIC13.11□□□□□ -0.31
Ddx56Q9D0R4 Gm37424-201ENSMUST00000191727 561 ntBASIC13.11□□□□□ -0.31
Ddx56Q9D0R4 Sox2ot-208ENSMUST00000197103 802 ntTSL 2 BASIC13.11□□□□□ -0.31
Ddx56Q9D0R4 Rpl7a-ps2-201ENSMUST00000200554 774 ntBASIC13.11□□□□□ -0.31
Ddx56Q9D0R4 Brsk1-205ENSMUST00000206024 1216 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Ddx56Q9D0R4 Gm31992-201ENSMUST00000213387 862 ntTSL 5 BASIC13.11□□□□□ -0.31
Ddx56Q9D0R4 Med10-204ENSMUST00000221893 815 ntTSL 2 BASIC13.11□□□□□ -0.31
Ddx56Q9D0R4 Mip-201ENSMUST00000026455 2144 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Ddx56Q9D0R4 Ccdc169-202ENSMUST00000061099 887 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
Ddx56Q9D0R4 Ifi27-202ENSMUST00000076702 828 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Ddx56Q9D0R4 Olfr463-201ENSMUST00000081417 936 ntAPPRIS P1 BASIC13.11□□□□□ -0.31
Ddx56Q9D0R4 Cryba4-201ENSMUST00000086629 746 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Ddx56Q9D0R4 Pcgf1-201ENSMUST00000092614 866 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Ddx56Q9D0R4 Gm37472-201ENSMUST00000192342 4052 ntBASIC13.11□□□□□ -0.31
Ddx56Q9D0R4 Pianp-206ENSMUST00000162000 2396 ntAPPRIS ALT2 TSL 5 BASIC13.11□□□□□ -0.31
Ddx56Q9D0R4 Steap3-204ENSMUST00000112643 2873 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Ddx56Q9D0R4 Rabif-201ENSMUST00000047978 2861 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Ddx56Q9D0R4 Tmem268-201ENSMUST00000077709 3765 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Ddx56Q9D0R4 Lsp1-201ENSMUST00000018963 1695 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Ddx56Q9D0R4 Pxn-214ENSMUST00000212819 1689 ntTSL 5 BASIC13.11□□□□□ -0.31
Ddx56Q9D0R4 Klk2-ps-202ENSMUST00000206865 2684 ntTSL 5 BASIC13.11□□□□□ -0.31
Ddx56Q9D0R4 Nhlh2-203ENSMUST00000198675 3943 ntAPPRIS P1 TSL 2 BASIC13.11□□□□□ -0.31
Ddx56Q9D0R4 Setd1a-202ENSMUST00000047157 5927 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
Ddx56Q9D0R4 Chrna9-201ENSMUST00000031108 1843 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Ddx56Q9D0R4 Trmt1l-201ENSMUST00000065625 2749 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Ddx56Q9D0R4 Nr2c2-202ENSMUST00000113463 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Ddx56Q9D0R4 Trim9-209ENSMUST00000222316 3049 ntTSL 2 BASIC13.1□□□□□ -0.31
Ddx56Q9D0R4 Adrb3-201ENSMUST00000081438 2795 ntAPPRIS P2 TSL 1 (best) BASIC13.1□□□□□ -0.31
Ddx56Q9D0R4 H2-Ob-202ENSMUST00000167280 1878 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Ddx56Q9D0R4 D630033O11Rik-204ENSMUST00000210588 1358 ntTSL 5 BASIC13.1□□□□□ -0.31
Ddx56Q9D0R4 Cstf3-201ENSMUST00000028599 2817 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Ddx56Q9D0R4 Drg2-201ENSMUST00000018568 1788 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Ddx56Q9D0R4 Hpse2-201ENSMUST00000099428 1779 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Ddx56Q9D0R4 BC055324-202ENSMUST00000097493 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
Ddx56Q9D0R4 Tmem230-203ENSMUST00000110164 2957 ntAPPRIS P1 TSL 2 BASIC13.1□□□□□ -0.31
Ddx56Q9D0R4 Rara-201ENSMUST00000068133 3384 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Ddx56Q9D0R4 Nr3c1-201ENSMUST00000025300 4989 ntAPPRIS P2 TSL 1 (best) BASIC13.1□□□□□ -0.31
Ddx56Q9D0R4 Cyth1-201ENSMUST00000017276 3135 ntAPPRIS ALT1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Ddx56Q9D0R4 Fgd5-201ENSMUST00000089334 6095 ntAPPRIS P2 TSL 1 (best) BASIC13.1□□□□□ -0.31
Ddx56Q9D0R4 Phyhd1-212ENSMUST00000154647 1678 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Ddx56Q9D0R4 Gm5053-201ENSMUST00000208361 1678 ntBASIC13.1□□□□□ -0.31
Ddx56Q9D0R4 Ighv8-9-201ENSMUST00000103533 301 ntAPPRIS P1 BASIC13.1□□□□□ -0.31
Ddx56Q9D0R4 Ighv8-13-201ENSMUST00000103542 303 ntAPPRIS ALT2 BASIC13.1□□□□□ -0.31
Ddx56Q9D0R4 Spsb1-202ENSMUST00000105684 1002 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Ddx56Q9D0R4 Upk3bl-202ENSMUST00000111137 1119 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
Ddx56Q9D0R4 Htr2c-203ENSMUST00000112831 809 ntTSL 3 BASIC13.1□□□□□ -0.31
Ddx56Q9D0R4 Gm6023-201ENSMUST00000118217 606 ntBASIC13.1□□□□□ -0.31
Ddx56Q9D0R4 Gm13342-201ENSMUST00000121055 207 ntBASIC13.1□□□□□ -0.31
Ddx56Q9D0R4 6330418K02Rik-201ENSMUST00000124298 743 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Ddx56Q9D0R4 D230022J07Rik-201ENSMUST00000144735 1062 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Ddx56Q9D0R4 Atp6v0e-201ENSMUST00000015719 794 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Ddx56Q9D0R4 Gm16302-201ENSMUST00000159268 428 ntTSL 3 BASIC13.1□□□□□ -0.31
Ddx56Q9D0R4 Tex9-206ENSMUST00000183574 1264 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
Ddx56Q9D0R4 5830411K02Rik-201ENSMUST00000200000 997 ntBASIC13.1□□□□□ -0.31
Ddx56Q9D0R4 Kdelr1-203ENSMUST00000211234 832 ntTSL 2 BASIC13.1□□□□□ -0.31
Ddx56Q9D0R4 Timm9-203ENSMUST00000220482 859 ntAPPRIS P1 TSL 3 BASIC13.1□□□□□ -0.31
Ddx56Q9D0R4 AC166349.1-201ENSMUST00000220866 695 ntBASIC13.1□□□□□ -0.31
Ddx56Q9D0R4 Lim2-201ENSMUST00000004732 884 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Ddx56Q9D0R4 Gpr31b-201ENSMUST00000091648 960 ntAPPRIS P1 BASIC13.1□□□□□ -0.31
Ddx56Q9D0R4 BC024139-201ENSMUST00000054022 2623 ntAPPRIS P2 TSL 1 (best) BASIC13.1□□□□□ -0.31
Ddx56Q9D0R4 Serpine3-201ENSMUST00000171692 1402 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Ddx56Q9D0R4 Gm20554-201ENSMUST00000177421 2352 ntBASIC13.1□□□□□ -0.31
Ddx56Q9D0R4 BC043934-202ENSMUST00000185694 2356 ntBASIC13.1□□□□□ -0.31
Ddx56Q9D0R4 Ldhal6b-201ENSMUST00000189788 1445 ntAPPRIS P1 BASIC13.1□□□□□ -0.31
Ddx56Q9D0R4 Acly-203ENSMUST00000107389 4426 ntAPPRIS ALT1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Ddx56Q9D0R4 Dars2-201ENSMUST00000035430 3619 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Ddx56Q9D0R4 Wdr18-201ENSMUST00000045247 3911 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Ddx56Q9D0R4 Cog7-203ENSMUST00000205438 3355 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Ddx56Q9D0R4 Tacr2-201ENSMUST00000020278 2258 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Ddx56Q9D0R4 Zfp354c-202ENSMUST00000109135 5325 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Ddx56Q9D0R4 Kcnn1-204ENSMUST00000212086 2964 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
Ddx56Q9D0R4 C1qtnf6-201ENSMUST00000023075 2402 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Ddx56Q9D0R4 Tfb2m-201ENSMUST00000027769 2449 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Ddx56Q9D0R4 Psd2-205ENSMUST00000176873 4375 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
Ddx56Q9D0R4 Rnf152-202ENSMUST00000172299 8406 ntAPPRIS P1 TSL 2 BASIC13.1□□□□□ -0.31
Ddx56Q9D0R4 Nek3-201ENSMUST00000033865 2021 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
Ddx56Q9D0R4 Scyl2-201ENSMUST00000092227 3566 ntAPPRIS ALT1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Ddx56Q9D0R4 Cog6-201ENSMUST00000036665 3182 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Ddx56Q9D0R4 Pkib-203ENSMUST00000095668 3311 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Ddx56Q9D0R4 Pfn4-204ENSMUST00000219503 4775 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Ddx56Q9D0R4 Krit1-201ENSMUST00000080085 2930 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Ddx56Q9D0R4 Gm44260-201ENSMUST00000204946 2094 ntBASIC13.09□□□□□ -0.31
Ddx56Q9D0R4 Jmjd8-201ENSMUST00000026832 2091 ntAPPRIS P2 TSL 1 (best) BASIC13.09□□□□□ -0.31
Ddx56Q9D0R4 Ank2-217ENSMUST00000182610 2231 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Ddx56Q9D0R4 Fbf1-202ENSMUST00000106435 4651 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Ddx56Q9D0R4 Pax6-203ENSMUST00000111082 3116 ntAPPRIS ALT1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Ddx56Q9D0R4 Syde2-203ENSMUST00000200546 4712 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
Ddx56Q9D0R4 Zfp354a-202ENSMUST00000102766 2592 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.31
Ddx56Q9D0R4 Gm42480-201ENSMUST00000198434 2595 ntBASIC13.09□□□□□ -0.31
Ddx56Q9D0R4 9130019O22Rik-202ENSMUST00000164345 2735 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Ddx56Q9D0R4 Sgk3-201ENSMUST00000097826 2728 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Retrieved 100 of 76,532 protein–RNA pairs in 36.4 ms