Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Grp-203ENSMUST00000173985 952 ntAPPRIS P2 TSL 5 BASIC14.68□□□□□ -0.06
Trim56Q80VI1 Gm25890-201ENSMUST00000177643 165 ntBASIC14.68□□□□□ -0.06
Trim56Q80VI1 Rnu1b2-201ENSMUST00000178073 165 ntBASIC14.68□□□□□ -0.06
Trim56Q80VI1 Rnu1b1-201ENSMUST00000178250 165 ntBASIC14.68□□□□□ -0.06
Trim56Q80VI1 Gm22614-201ENSMUST00000178300 165 ntBASIC14.68□□□□□ -0.06
Trim56Q80VI1 Gm26636-201ENSMUST00000181696 1115 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
Trim56Q80VI1 Gm38000-201ENSMUST00000192390 1215 ntBASIC14.68□□□□□ -0.06
Trim56Q80VI1 Gm45224-201ENSMUST00000208203 414 ntBASIC14.68□□□□□ -0.06
Trim56Q80VI1 AC164612.1-201ENSMUST00000216699 517 ntTSL 5 BASIC14.68□□□□□ -0.06
Trim56Q80VI1 Gm19994-201ENSMUST00000217086 586 ntBASIC14.68□□□□□ -0.06
Trim56Q80VI1 1700011B04Rik-203ENSMUST00000220654 1033 ntTSL 5 BASIC14.68□□□□□ -0.06
Trim56Q80VI1 1700011B04Rik-209ENSMUST00000221760 779 ntTSL 5 BASIC14.68□□□□□ -0.06
Trim56Q80VI1 Crip3-201ENSMUST00000024764 955 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Trim56Q80VI1 Pxt1-201ENSMUST00000051526 710 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Trim56Q80VI1 Gm22042-201ENSMUST00000082989 165 ntBASIC14.68□□□□□ -0.06
Trim56Q80VI1 Gm26232-201ENSMUST00000083360 166 ntBASIC14.68□□□□□ -0.06
Trim56Q80VI1 Rnu1b6-201ENSMUST00000083839 166 ntBASIC14.68□□□□□ -0.06
Trim56Q80VI1 Gm26110-201ENSMUST00000083971 165 ntBASIC14.68□□□□□ -0.06
Trim56Q80VI1 Cma2-201ENSMUST00000089555 947 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Trim56Q80VI1 Ccdc89-201ENSMUST00000061391 2093 ntAPPRIS P1 BASIC14.68□□□□□ -0.06
Trim56Q80VI1 Adcyap1r1-203ENSMUST00000165786 1745 ntAPPRIS ALT2 TSL 5 BASIC14.68□□□□□ -0.06
Trim56Q80VI1 2410002F23Rik-206ENSMUST00000107950 3336 ntAPPRIS P2 TSL 2 BASIC14.68□□□□□ -0.06
Trim56Q80VI1 Cd79a-201ENSMUST00000003469 1457 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Trim56Q80VI1 Reep2-201ENSMUST00000043484 1926 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Trim56Q80VI1 Plagl1-201ENSMUST00000121325 3946 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
Trim56Q80VI1 Grid2ip-201ENSMUST00000010969 3459 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
Trim56Q80VI1 Caskin2-201ENSMUST00000041684 4929 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Trim56Q80VI1 Srr-203ENSMUST00000108448 3239 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
Trim56Q80VI1 AC125108.1-201ENSMUST00000218986 2330 ntBASIC14.67□□□□□ -0.06
Trim56Q80VI1 Gm36445-201ENSMUST00000209344 1432 ntTSL 5 BASIC14.67□□□□□ -0.06
Trim56Q80VI1 Irak1-203ENSMUST00000101458 2052 ntAPPRIS ALT2 TSL 5 BASIC14.67□□□□□ -0.06
Trim56Q80VI1 Lef1-204ENSMUST00000106341 3357 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Trim56Q80VI1 Lef1-202ENSMUST00000066849 3398 ntAPPRIS ALT1 TSL 5 BASIC14.67□□□□□ -0.06
Trim56Q80VI1 Nsd3-208ENSMUST00000146919 3652 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Trim56Q80VI1 Slco4a1-202ENSMUST00000038259 3010 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Trim56Q80VI1 Bak1-202ENSMUST00000078691 2387 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Trim56Q80VI1 Trp63-204ENSMUST00000115305 1729 ntAPPRIS ALT1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Trim56Q80VI1 Sde2-201ENSMUST00000038091 3213 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Trim56Q80VI1 Olfr1411-203ENSMUST00000216444 1901 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
Trim56Q80VI1 Gm12015-201ENSMUST00000117065 843 ntBASIC14.67□□□□□ -0.06
Trim56Q80VI1 G630018N14Rik-201ENSMUST00000135656 1231 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Trim56Q80VI1 Mitd1-205ENSMUST00000139725 1175 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Trim56Q80VI1 Fez1-208ENSMUST00000163816 1285 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Trim56Q80VI1 Malat1-204ENSMUST00000173523 656 ntTSL 3 BASIC14.67□□□□□ -0.06
Trim56Q80VI1 Dmrt1i-203ENSMUST00000197311 718 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Trim56Q80VI1 Gm13097-201ENSMUST00000210722 397 ntBASIC14.67□□□□□ -0.06
Trim56Q80VI1 Gm33104-201ENSMUST00000214178 1010 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Trim56Q80VI1 Gzmn-202ENSMUST00000225535 989 ntBASIC14.67□□□□□ -0.06
Trim56Q80VI1 AC163667.3-201ENSMUST00000225774 222 ntBASIC14.67□□□□□ -0.06
Trim56Q80VI1 AC161537.1-201ENSMUST00000226199 1015 ntBASIC14.67□□□□□ -0.06
Trim56Q80VI1 Psma1-201ENSMUST00000033008 1201 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Trim56Q80VI1 Gm9843-201ENSMUST00000052867 504 ntAPPRIS P1 BASIC14.67□□□□□ -0.06
Trim56Q80VI1 Gm20721-201ENSMUST00000168292 1484 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
Trim56Q80VI1 Pcp4l1-201ENSMUST00000111332 1577 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Trim56Q80VI1 Tspan32-201ENSMUST00000009396 1582 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
Trim56Q80VI1 Fbxl12-202ENSMUST00000086459 2086 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Trim56Q80VI1 Cdv3-203ENSMUST00000116517 3741 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Trim56Q80VI1 Osbp2-203ENSMUST00000102950 3077 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
Trim56Q80VI1 Plch2-210ENSMUST00000176194 5619 ntAPPRIS ALT2 TSL 5 BASIC14.67□□□□□ -0.06
Trim56Q80VI1 Zfyve28-201ENSMUST00000094868 3983 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Trim56Q80VI1 Plch2-201ENSMUST00000105631 5053 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
Trim56Q80VI1 1810008I18Rik-201ENSMUST00000185464 2419 ntBASIC14.66□□□□□ -0.06
Trim56Q80VI1 Grin3a-202ENSMUST00000093859 7491 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Trim56Q80VI1 Slc25a25-203ENSMUST00000113307 2541 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Trim56Q80VI1 Dync1li1-201ENSMUST00000047404 2601 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Trim56Q80VI1 Sgk3-201ENSMUST00000097826 2728 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Trim56Q80VI1 Kalrn-209ENSMUST00000114963 3207 ntTSL 5 BASIC14.66□□□□□ -0.06
Trim56Q80VI1 Ifnlr1-201ENSMUST00000074408 4182 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Trim56Q80VI1 Sfmbt1-206ENSMUST00000228006 3299 ntAPPRIS P1 BASIC14.66□□□□□ -0.06
Trim56Q80VI1 Trim26-205ENSMUST00000130367 3187 ntAPPRIS P2 TSL 5 BASIC14.66□□□□□ -0.06
Trim56Q80VI1 Tcf4-205ENSMUST00000114980 2192 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
Trim56Q80VI1 Serpina16-202ENSMUST00000164148 1582 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
Trim56Q80VI1 Adat3-201ENSMUST00000178231 4516 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
Trim56Q80VI1 Serinc2-202ENSMUST00000120126 1452 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
Trim56Q80VI1 Gm11564-201ENSMUST00000105055 691 ntAPPRIS P1 BASIC14.66□□□□□ -0.06
Trim56Q80VI1 Clic3-202ENSMUST00000114265 808 ntAPPRIS P2 TSL 1 (best) BASIC14.66□□□□□ -0.06
Trim56Q80VI1 Rap1a-ps2-201ENSMUST00000118467 559 ntBASIC14.66□□□□□ -0.06
Trim56Q80VI1 Gm15808-201ENSMUST00000119046 604 ntBASIC14.66□□□□□ -0.06
Trim56Q80VI1 Tnfrsf18-203ENSMUST00000122001 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
Trim56Q80VI1 Gm6963-201ENSMUST00000147879 379 ntBASIC14.66□□□□□ -0.06
Trim56Q80VI1 1810008B01Rik-201ENSMUST00000162325 829 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Trim56Q80VI1 Rps13-201ENSMUST00000170953 589 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Trim56Q80VI1 Gm20636-201ENSMUST00000176660 707 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Trim56Q80VI1 Gm5070-201ENSMUST00000177599 862 ntBASIC14.66□□□□□ -0.06
Trim56Q80VI1 Gm45691-201ENSMUST00000206905 1120 ntBASIC14.66□□□□□ -0.06
Trim56Q80VI1 Tm2d3-201ENSMUST00000032726 908 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
Trim56Q80VI1 Cryga-201ENSMUST00000061497 625 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Trim56Q80VI1 Pcdhga12-201ENSMUST00000044851 5080 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Trim56Q80VI1 Emp1-206ENSMUST00000205156 2911 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
Trim56Q80VI1 Pou2af1-201ENSMUST00000034554 2548 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Trim56Q80VI1 Emc7-201ENSMUST00000069747 5826 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Trim56Q80VI1 Sec14l5-201ENSMUST00000165810 2337 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Trim56Q80VI1 Ttc25-202ENSMUST00000092684 2240 ntAPPRIS P2 TSL 1 (best) BASIC14.66□□□□□ -0.06
Trim56Q80VI1 Rara-201ENSMUST00000068133 3384 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Trim56Q80VI1 H2-Q1-201ENSMUST00000073208 2024 ntAPPRIS P2 TSL 1 (best) BASIC14.66□□□□□ -0.06
Trim56Q80VI1 D330041H03Rik-205ENSMUST00000181014 1903 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Trim56Q80VI1 2610001J05Rik-203ENSMUST00000185219 1606 ntAPPRIS P1 BASIC14.66□□□□□ -0.06
Trim56Q80VI1 Smim13-201ENSMUST00000165561 4483 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Trim56Q80VI1 Eif4ebp2-202ENSMUST00000167087 1422 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
Trim56Q80VI1 Erich5-201ENSMUST00000060894 2383 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Retrieved 100 of 76,532 protein–RNA pairs in 65.3 ms