Protein–RNA interactions for Protein: Q5NCC3

Trim41, E3 ubiquitin-protein ligase TRIM41, mousemouse

Predictions only

Length 630 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim41Q5NCC3 Gm5369-201ENSMUST00000217499 588 ntBASIC21.66■■□□□ 1.06
Trim41Q5NCC3 1700011B04Rik-203ENSMUST00000220654 1033 ntTSL 5 BASIC21.66■■□□□ 1.06
Trim41Q5NCC3 1700011B04Rik-209ENSMUST00000221760 779 ntTSL 5 BASIC21.66■■□□□ 1.06
Trim41Q5NCC3 AC159205.5-202ENSMUST00000224849 386 ntBASIC21.66■■□□□ 1.06
Trim41Q5NCC3 U2af1l4-201ENSMUST00000043273 884 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Trim41Q5NCC3 Cbx1-202ENSMUST00000079702 912 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
Trim41Q5NCC3 Olfr293-201ENSMUST00000081474 1011 ntAPPRIS P1 BASIC21.66■■□□□ 1.06
Trim41Q5NCC3 Gm25201-201ENSMUST00000083093 170 ntBASIC21.66■■□□□ 1.06
Trim41Q5NCC3 Lst1-201ENSMUST00000097336 415 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Trim41Q5NCC3 Mief1-201ENSMUST00000023048 5081 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Trim41Q5NCC3 Gcom1-201ENSMUST00000163998 1726 ntAPPRIS P5 TSL 5 BASIC21.66■■□□□ 1.06
Trim41Q5NCC3 Cand2-201ENSMUST00000075995 5474 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Trim41Q5NCC3 Aph1a-201ENSMUST00000015894 2863 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
Trim41Q5NCC3 Nkx6-3-201ENSMUST00000071588 2238 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Trim41Q5NCC3 Ripor2-201ENSMUST00000038477 3371 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
Trim41Q5NCC3 Aldoa-203ENSMUST00000106348 1460 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Trim41Q5NCC3 Srfbp1-201ENSMUST00000025406 1463 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Trim41Q5NCC3 Fbln1-201ENSMUST00000057410 3659 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
Trim41Q5NCC3 Gm3283-201ENSMUST00000199319 1350 ntBASIC21.65■■□□□ 1.06
Trim41Q5NCC3 BC048403-202ENSMUST00000136432 2968 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
Trim41Q5NCC3 Rcsd1-202ENSMUST00000097474 5001 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
Trim41Q5NCC3 Ash2l-204ENSMUST00000110610 2337 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
Trim41Q5NCC3 Vsir-202ENSMUST00000105459 1290 ntTSL 5 BASIC21.65■■□□□ 1.06
Trim41Q5NCC3 Rps9-203ENSMUST00000108624 478 ntTSL 5 BASIC21.65■■□□□ 1.06
Trim41Q5NCC3 Gm14034-201ENSMUST00000120147 551 ntBASIC21.65■■□□□ 1.06
Trim41Q5NCC3 Prkaca-ps1-201ENSMUST00000120823 919 ntBASIC21.65■■□□□ 1.06
Trim41Q5NCC3 Znhit6-206ENSMUST00000199033 1127 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
Trim41Q5NCC3 Cacng1-201ENSMUST00000021065 1249 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Trim41Q5NCC3 Gm10176-201ENSMUST00000159707 2264 ntBASIC21.65■■□□□ 1.06
Trim41Q5NCC3 Ttc3-202ENSMUST00000119131 3212 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
Trim41Q5NCC3 Rasal3-201ENSMUST00000063824 3681 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
Trim41Q5NCC3 Cd247-201ENSMUST00000005907 1632 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Trim41Q5NCC3 Speg-205ENSMUST00000113590 3393 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
Trim41Q5NCC3 Gm26685-201ENSMUST00000181831 2023 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
Trim41Q5NCC3 Sbk1-201ENSMUST00000056028 4109 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Trim41Q5NCC3 Ttc23l-201ENSMUST00000022857 1931 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Trim41Q5NCC3 Ywhaz-203ENSMUST00000110361 2285 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
Trim41Q5NCC3 Fut8-201ENSMUST00000062804 3358 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
Trim41Q5NCC3 Tal1-203ENSMUST00000161601 3703 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
Trim41Q5NCC3 Gak-201ENSMUST00000046603 4453 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
Trim41Q5NCC3 Sema6c-202ENSMUST00000090823 4029 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.06
Trim41Q5NCC3 Mir671-201ENSMUST00000102432 98 ntBASIC21.64■■□□□ 1.05
Trim41Q5NCC3 Inca1-202ENSMUST00000108541 1150 ntAPPRIS P3 TSL 1 (best) BASIC21.64■■□□□ 1.05
Trim41Q5NCC3 Inca1-205ENSMUST00000126114 1189 ntAPPRIS P3 TSL 1 (best) BASIC21.64■■□□□ 1.05
Trim41Q5NCC3 Aknaos-201ENSMUST00000144095 1104 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
Trim41Q5NCC3 Gm12589-201ENSMUST00000153767 638 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
Trim41Q5NCC3 Lypd1-203ENSMUST00000159529 989 ntTSL 2 BASIC21.64■■□□□ 1.05
Trim41Q5NCC3 Taf9-201ENSMUST00000167256 1230 ntAPPRIS P1 TSL 2 BASIC21.64■■□□□ 1.05
Trim41Q5NCC3 Gm29615-201ENSMUST00000185371 697 ntBASIC21.64■■□□□ 1.05
Trim41Q5NCC3 Gm28224-201ENSMUST00000186078 697 ntBASIC21.64■■□□□ 1.05
Trim41Q5NCC3 Gm29001-201ENSMUST00000186177 697 ntBASIC21.64■■□□□ 1.05
Trim41Q5NCC3 Gm28292-201ENSMUST00000186593 697 ntBASIC21.64■■□□□ 1.05
Trim41Q5NCC3 Gm28101-201ENSMUST00000187608 697 ntBASIC21.64■■□□□ 1.05
Trim41Q5NCC3 Gm29076-201ENSMUST00000187689 697 ntBASIC21.64■■□□□ 1.05
Trim41Q5NCC3 Gm28302-201ENSMUST00000187931 697 ntBASIC21.64■■□□□ 1.05
Trim41Q5NCC3 Gm28646-201ENSMUST00000188220 697 ntBASIC21.64■■□□□ 1.05
Trim41Q5NCC3 Gm28205-201ENSMUST00000189177 697 ntBASIC21.64■■□□□ 1.05
Trim41Q5NCC3 Gm29032-201ENSMUST00000189797 697 ntBASIC21.64■■□□□ 1.05
Trim41Q5NCC3 Gm28695-201ENSMUST00000190300 697 ntBASIC21.64■■□□□ 1.05
Trim41Q5NCC3 Gm37448-201ENSMUST00000192795 697 ntBASIC21.64■■□□□ 1.05
Trim41Q5NCC3 Zfp655-203ENSMUST00000196069 1150 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
Trim41Q5NCC3 Hax1-205ENSMUST00000197767 1092 ntAPPRIS ALT2 TSL 5 BASIC21.64■■□□□ 1.05
Trim41Q5NCC3 AY036118-201ENSMUST00000200021 923 ntBASIC21.64■■□□□ 1.05
Trim41Q5NCC3 Gm42726-201ENSMUST00000202274 1286 ntTSL 5 BASIC21.64■■□□□ 1.05
Trim41Q5NCC3 Gm45527-201ENSMUST00000211052 774 ntBASIC21.64■■□□□ 1.05
Trim41Q5NCC3 Inca1-201ENSMUST00000073625 1218 ntAPPRIS P3 TSL 1 (best) BASIC21.64■■□□□ 1.05
Trim41Q5NCC3 Gm10701-201ENSMUST00000098926 906 ntTSL 2 BASIC21.64■■□□□ 1.05
Trim41Q5NCC3 Gm44851-201ENSMUST00000205735 2309 ntBASIC21.64■■□□□ 1.05
Trim41Q5NCC3 Adgrv1-206ENSMUST00000128120 1591 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
Trim41Q5NCC3 Styxl1-201ENSMUST00000053906 1582 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Trim41Q5NCC3 Fem1a-201ENSMUST00000060253 6816 ntAPPRIS P1 BASIC21.64■■□□□ 1.05
Trim41Q5NCC3 Olfr71-202ENSMUST00000107862 2587 ntAPPRIS P1 TSL 3 BASIC21.64■■□□□ 1.05
Trim41Q5NCC3 F7-201ENSMUST00000033820 1859 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Trim41Q5NCC3 Ctbs-202ENSMUST00000061937 2892 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
Trim41Q5NCC3 Gm29253-201ENSMUST00000185727 5231 ntTSL 5 BASIC21.64■■□□□ 1.05
Trim41Q5NCC3 Kcnt1-211ENSMUST00000171268 3771 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
Trim41Q5NCC3 Gm13142-201ENSMUST00000117213 1453 ntBASIC21.64■■□□□ 1.05
Trim41Q5NCC3 Spert-204ENSMUST00000169658 1474 ntAPPRIS ALT2 TSL 3 BASIC21.64■■□□□ 1.05
Trim41Q5NCC3 Terb2-201ENSMUST00000028661 2115 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Trim41Q5NCC3 Lrriq4-201ENSMUST00000108265 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
Trim41Q5NCC3 Heatr3-201ENSMUST00000034079 3251 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Trim41Q5NCC3 Rab3d-201ENSMUST00000115351 3835 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Trim41Q5NCC3 Plch2-210ENSMUST00000176194 5619 ntAPPRIS ALT2 TSL 5 BASIC21.63■■□□□ 1.05
Trim41Q5NCC3 Ccdc42os-201ENSMUST00000148019 1335 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
Trim41Q5NCC3 Ccr6-203ENSMUST00000166348 1310 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Trim41Q5NCC3 Klhl18-203ENSMUST00000198164 4538 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
Trim41Q5NCC3 Nrap-201ENSMUST00000040711 5334 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
Trim41Q5NCC3 Tcf25-201ENSMUST00000057934 2738 ntAPPRIS P3 TSL 1 (best) BASIC21.63■■□□□ 1.05
Trim41Q5NCC3 Hmgcll1-202ENSMUST00000117981 1189 ntTSL 5 BASIC21.63■■□□□ 1.05
Trim41Q5NCC3 Pbld1-206ENSMUST00000219687 788 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
Trim41Q5NCC3 AC154252.2-201ENSMUST00000223593 767 ntBASIC21.63■■□□□ 1.05
Trim41Q5NCC3 Kifc1-204ENSMUST00000173492 2350 ntAPPRIS P2 TSL 1 (best) BASIC21.63■■□□□ 1.05
Trim41Q5NCC3 Cadps2-213ENSMUST00000166458 4598 ntAPPRIS ALT2 TSL 5 BASIC21.63■■□□□ 1.05
Trim41Q5NCC3 Pcdha8-201ENSMUST00000194038 5338 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Trim41Q5NCC3 Cflar-202ENSMUST00000097722 1771 ntAPPRIS ALT2 TSL 5 BASIC21.63■■□□□ 1.05
Trim41Q5NCC3 Metap2-206ENSMUST00000180840 2551 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Trim41Q5NCC3 Atg7-207ENSMUST00000182428 2264 ntAPPRIS ALT2 TSL 5 BASIC21.63■■□□□ 1.05
Trim41Q5NCC3 Spsb1-201ENSMUST00000038562 3092 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Trim41Q5NCC3 Cd80-201ENSMUST00000099816 1701 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Trim41Q5NCC3 Npc2-201ENSMUST00000021668 3299 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Retrieved 100 of 76,532 protein–RNA pairs in 66.2 ms