Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Siva1-202ENSMUST00000109755 333 ntTSL 1 (best) BASIC10.18□□□□□ -0.78
Sdc1P18828 Gm11978-201ENSMUST00000122315 466 ntBASIC10.18□□□□□ -0.78
Sdc1P18828 Ecscr-204ENSMUST00000133064 1055 ntAPPRIS ALT2 TSL 2 BASIC10.18□□□□□ -0.78
Sdc1P18828 Triqk-201ENSMUST00000143186 888 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
Sdc1P18828 Gm29585-201ENSMUST00000185270 514 ntTSL 5 BASIC10.18□□□□□ -0.78
Sdc1P18828 Gm28262-201ENSMUST00000185463 477 ntTSL 5 BASIC10.18□□□□□ -0.78
Sdc1P18828 2310040G24Rik-202ENSMUST00000189386 775 ntTSL 1 (best) BASIC10.18□□□□□ -0.78
Sdc1P18828 Prr29-205ENSMUST00000190268 1141 ntAPPRIS ALT2 TSL 5 BASIC10.18□□□□□ -0.78
Sdc1P18828 Efcab10-201ENSMUST00000020878 673 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
Sdc1P18828 0610005C13Rik-209ENSMUST00000211209 974 ntTSL 2 BASIC10.18□□□□□ -0.78
Sdc1P18828 Bet1l-209ENSMUST00000211624 769 ntTSL 3 BASIC10.18□□□□□ -0.78
Sdc1P18828 Gm5771-201ENSMUST00000049079 798 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
Sdc1P18828 Upk3bl-201ENSMUST00000006303 1045 ntAPPRIS P2 TSL 1 (best) BASIC10.18□□□□□ -0.78
Sdc1P18828 Ecscr-201ENSMUST00000097618 1114 ntAPPRIS P2 TSL 1 (best) BASIC10.18□□□□□ -0.78
Sdc1P18828 Kcnma1-205ENSMUST00000145596 12094 ntAPPRIS ALT2 BASIC10.18□□□□□ -0.78
Sdc1P18828 Il11ra1-202ENSMUST00000108040 1837 ntAPPRIS P1 TSL 5 BASIC10.18□□□□□ -0.78
Sdc1P18828 Gprc5c-208ENSMUST00000177952 1809 ntAPPRIS P3 TSL 1 (best) BASIC10.18□□□□□ -0.78
Sdc1P18828 Gm7642-201ENSMUST00000216345 1809 ntBASIC10.18□□□□□ -0.78
Sdc1P18828 Phf24-202ENSMUST00000107975 6494 ntAPPRIS P1 TSL 2 BASIC10.18□□□□□ -0.78
Sdc1P18828 Mtf2-201ENSMUST00000081567 4060 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
Sdc1P18828 Parp11-202ENSMUST00000112191 3414 ntTSL 1 (best) BASIC10.18□□□□□ -0.78
Sdc1P18828 Trub2-201ENSMUST00000048044 3408 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
Sdc1P18828 Styxl1-208ENSMUST00000178515 1651 ntTSL 1 (best) BASIC10.18□□□□□ -0.78
Sdc1P18828 Nsf-202ENSMUST00000103075 3766 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
Sdc1P18828 Gfra1-209ENSMUST00000169850 3224 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
Sdc1P18828 Gjb1-203ENSMUST00000119190 1585 ntAPPRIS P1 TSL 2 BASIC10.18□□□□□ -0.78
Sdc1P18828 Gabra1-201ENSMUST00000020707 4688 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
Sdc1P18828 Peg10-202ENSMUST00000176204 6667 ntAPPRIS P2 TSL 2 BASIC10.18□□□□□ -0.78
Sdc1P18828 Fuca2-201ENSMUST00000060212 2007 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
Sdc1P18828 Zbtb42-201ENSMUST00000169593 3478 ntAPPRIS P1 TSL 2 BASIC10.17□□□□□ -0.78
Sdc1P18828 Gm12968-201ENSMUST00000138291 1454 ntTSL 1 (best) BASIC10.17□□□□□ -0.78
Sdc1P18828 Zfp518b-203ENSMUST00000179555 6816 ntAPPRIS P1 TSL 2 BASIC10.17□□□□□ -0.78
Sdc1P18828 Usp44-201ENSMUST00000095333 2946 ntTSL 1 (best) BASIC10.17□□□□□ -0.78
Sdc1P18828 Zcchc8-204ENSMUST00000196282 4350 ntAPPRIS P1 TSL 5 BASIC10.17□□□□□ -0.78
Sdc1P18828 4732471J01Rik-204ENSMUST00000206436 2430 ntTSL 1 (best) BASIC10.17□□□□□ -0.78
Sdc1P18828 Herc4-201ENSMUST00000020258 3898 ntAPPRIS P2 TSL 1 (best) BASIC10.17□□□□□ -0.78
Sdc1P18828 Cyb561d1-202ENSMUST00000106654 1914 ntAPPRIS ALT1 TSL 1 (best) BASIC10.17□□□□□ -0.78
Sdc1P18828 AC126262.1-201ENSMUST00000221802 1904 ntBASIC10.17□□□□□ -0.78
Sdc1P18828 Msh5-201ENSMUST00000007250 2886 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
Sdc1P18828 C920006O11Rik-201ENSMUST00000180974 1444 ntTSL 1 (best) BASIC10.17□□□□□ -0.78
Sdc1P18828 Gm21319-201ENSMUST00000164517 1863 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
Sdc1P18828 Knop1-206ENSMUST00000126792 3253 ntAPPRIS ALT2 TSL 1 (best) BASIC10.17□□□□□ -0.78
Sdc1P18828 Pdcd11-201ENSMUST00000072141 6041 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
Sdc1P18828 Gm45187-201ENSMUST00000207697 2760 ntTSL 1 (best) BASIC10.17□□□□□ -0.78
Sdc1P18828 Sel1l-204ENSMUST00000167466 5544 ntTSL 1 (best) BASIC10.17□□□□□ -0.78
Sdc1P18828 Enpp6-202ENSMUST00000119686 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC10.17□□□□□ -0.78
Sdc1P18828 Dnmt3l-205ENSMUST00000138785 1822 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
Sdc1P18828 Gck-201ENSMUST00000102920 2727 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
Sdc1P18828 Adgrl3-201ENSMUST00000036068 6203 ntAPPRIS ALT2 TSL 5 BASIC10.17□□□□□ -0.78
Sdc1P18828 Adgrl3-202ENSMUST00000072521 6203 ntAPPRIS P3 TSL 5 BASIC10.17□□□□□ -0.78
Sdc1P18828 Cfap77-204ENSMUST00000189711 1759 ntAPPRIS ALT2 TSL 5 BASIC10.17□□□□□ -0.78
Sdc1P18828 Trim11-202ENSMUST00000108809 3522 ntTSL 1 (best) BASIC10.17□□□□□ -0.78
Sdc1P18828 Cdk5rap1-203ENSMUST00000109731 2160 ntAPPRIS P1 TSL 5 BASIC10.17□□□□□ -0.78
Sdc1P18828 Celf2-225ENSMUST00000183091 2177 ntTSL 5 BASIC10.17□□□□□ -0.78
Sdc1P18828 Gm25287-201ENSMUST00000103846 110 ntBASIC10.17□□□□□ -0.78
Sdc1P18828 Gm22918-201ENSMUST00000103855 110 ntBASIC10.17□□□□□ -0.78
Sdc1P18828 Prmt7-203ENSMUST00000109297 1094 ntTSL 1 (best) BASIC10.17□□□□□ -0.78
Sdc1P18828 Rpl17-ps10-201ENSMUST00000119383 555 ntBASIC10.17□□□□□ -0.78
Sdc1P18828 Rpl17-ps9-201ENSMUST00000119541 555 ntBASIC10.17□□□□□ -0.78
Sdc1P18828 Rpl17-ps4-201ENSMUST00000120241 555 ntBASIC10.17□□□□□ -0.78
Sdc1P18828 4933427I22Rik-201ENSMUST00000138672 393 ntTSL 3 BASIC10.17□□□□□ -0.78
Sdc1P18828 Gm16160-201ENSMUST00000160105 781 ntTSL 2 BASIC10.17□□□□□ -0.78
Sdc1P18828 Ndufa1-201ENSMUST00000016571 419 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
Sdc1P18828 Slc19a2-204ENSMUST00000169394 894 ntTSL 5 BASIC10.17□□□□□ -0.78
Sdc1P18828 A430093F15Rik-205ENSMUST00000188480 509 ntTSL 3 BASIC10.17□□□□□ -0.78
Sdc1P18828 Gm18195-201ENSMUST00000207604 706 ntBASIC10.17□□□□□ -0.78
Sdc1P18828 Pard6a-204ENSMUST00000212352 1234 ntTSL 2 BASIC10.17□□□□□ -0.78
Sdc1P18828 Gm46209-201ENSMUST00000217912 553 ntBASIC10.17□□□□□ -0.78
Sdc1P18828 AC158538.1-201ENSMUST00000225870 294 ntBASIC10.17□□□□□ -0.78
Sdc1P18828 Il17b-201ENSMUST00000025471 692 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
Sdc1P18828 Nudt22-201ENSMUST00000041686 1000 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
Sdc1P18828 Krtap9-3-201ENSMUST00000062683 759 ntAPPRIS P1 BASIC10.17□□□□□ -0.78
Sdc1P18828 Rnaseh2a-201ENSMUST00000065049 1006 ntTSL 1 (best) BASIC10.17□□□□□ -0.78
Sdc1P18828 Dgcr6-202ENSMUST00000076757 894 ntTSL 5 BASIC10.17□□□□□ -0.78
Sdc1P18828 Vmn1r217-201ENSMUST00000091721 897 ntAPPRIS P1 BASIC10.17□□□□□ -0.78
Sdc1P18828 Parp14-201ENSMUST00000042665 7417 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
Sdc1P18828 Cc2d1a-202ENSMUST00000117424 3262 ntAPPRIS ALT2 TSL 5 BASIC10.17□□□□□ -0.78
Sdc1P18828 Fam160b2-201ENSMUST00000022690 4033 ntAPPRIS P1 TSL 5 BASIC10.17□□□□□ -0.78
Sdc1P18828 Becn1-205ENSMUST00000130916 4365 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
Sdc1P18828 Csk-204ENSMUST00000215396 2390 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
Sdc1P18828 Npepps-201ENSMUST00000001480 4215 ntAPPRIS P2 TSL 1 (best) BASIC10.17□□□□□ -0.78
Sdc1P18828 Tbx6-202ENSMUST00000172352 1529 ntTSL 1 (best) BASIC10.17□□□□□ -0.78
Sdc1P18828 Eng-201ENSMUST00000009705 3422 ntAPPRIS P3 TSL 1 (best) BASIC10.17□□□□□ -0.78
Sdc1P18828 Tmem268-201ENSMUST00000077709 3765 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
Sdc1P18828 Rbm4-206ENSMUST00000180248 2610 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
Sdc1P18828 Kifc5b-201ENSMUST00000078961 2627 ntAPPRIS P1 TSL 5 BASIC10.17□□□□□ -0.78
Sdc1P18828 Ash2l-210ENSMUST00000166078 2234 ntAPPRIS ALT2 TSL 5 BASIC10.17□□□□□ -0.78
Sdc1P18828 Ank2-217ENSMUST00000182610 2231 ntTSL 1 (best) BASIC10.17□□□□□ -0.78
Sdc1P18828 Fnip1-201ENSMUST00000046835 6255 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
Sdc1P18828 Gpr12-203ENSMUST00000197431 1455 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
Sdc1P18828 S100b-201ENSMUST00000036387 1484 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
Sdc1P18828 Actc1-201ENSMUST00000090269 1473 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
Sdc1P18828 Cdh18-204ENSMUST00000165614 2162 ntTSL 5 BASIC10.16□□□□□ -0.78
Sdc1P18828 Aoc2-201ENSMUST00000041095 2543 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
Sdc1P18828 Traf7-202ENSMUST00000088464 2504 ntAPPRIS P1 TSL 5 BASIC10.16□□□□□ -0.78
Sdc1P18828 Gm37931-201ENSMUST00000194686 2866 ntBASIC10.16□□□□□ -0.78
Sdc1P18828 Cplx3-201ENSMUST00000045068 2859 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
Sdc1P18828 Srebf1-201ENSMUST00000020846 4299 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
Sdc1P18828 Gm34370-201ENSMUST00000209385 1410 ntTSL 5 BASIC10.16□□□□□ -0.78
Sdc1P18828 Spata13-207ENSMUST00000160973 7467 ntAPPRIS P3 TSL 1 (best) BASIC10.16□□□□□ -0.78
Retrieved 100 of 76,532 protein–RNA pairs in 39 ms