Protein–RNA interactions for Protein: P11260

Lire1, LINE-1 retrotransposable element ORF1 protein, mousemouse

Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lire1P11260 Gm12280-201ENSMUST00000155836 1624 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Lire1P11260 Pcdhgb2-202ENSMUST00000195112 4661 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Lire1P11260 Adck2-204ENSMUST00000140364 3542 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Lire1P11260 Banp-204ENSMUST00000170857 5444 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Lire1P11260 1700047I17Rik2-201ENSMUST00000177978 3863 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Lire1P11260 Dtx1-201ENSMUST00000031607 4035 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Lire1P11260 Wnt16-202ENSMUST00000128245 3285 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Lire1P11260 Trp53-203ENSMUST00000108658 1771 ntAPPRIS P3 TSL 1 (best) BASIC11.92□□□□□ -0.5
Lire1P11260 Trp53-201ENSMUST00000005371 1772 ntAPPRIS ALT2 TSL 1 (best) BASIC11.92□□□□□ -0.5
Lire1P11260 Mapt-201ENSMUST00000100347 1362 ntAPPRIS P4 TSL 1 (best) BASIC11.92□□□□□ -0.5
Lire1P11260 Lcmt1-201ENSMUST00000033025 1369 ntAPPRIS P2 TSL 1 (best) BASIC11.92□□□□□ -0.5
Lire1P11260 Pitpnm2-201ENSMUST00000086123 6620 ntAPPRIS P3 TSL 1 (best) BASIC11.91□□□□□ -0.5
Lire1P11260 Ptpn11-201ENSMUST00000054547 5535 ntAPPRIS P3 TSL 1 (best) BASIC11.91□□□□□ -0.5
Lire1P11260 Klhl3-202ENSMUST00000160860 7149 ntAPPRIS P1 TSL 5 BASIC11.91□□□□□ -0.5
Lire1P11260 Grid2ip-203ENSMUST00000120825 3865 ntTSL 5 BASIC11.91□□□□□ -0.5
Lire1P11260 AC161252.3-201ENSMUST00000225465 1549 ntBASIC11.91□□□□□ -0.5
Lire1P11260 Ano1-201ENSMUST00000033393 4585 ntAPPRIS ALT2 TSL 5 BASIC11.91□□□□□ -0.5
Lire1P11260 Adamtsl4-202ENSMUST00000117782 4036 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Lire1P11260 Apbb2-216ENSMUST00000162366 6540 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Lire1P11260 Ablim1-211ENSMUST00000111555 2562 ntAPPRIS ALT2 TSL 5 BASIC11.91□□□□□ -0.5
Lire1P11260 Nrf1-210ENSMUST00000115211 3295 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Lire1P11260 Gm11661-201ENSMUST00000121761 1327 ntBASIC11.91□□□□□ -0.5
Lire1P11260 Msi2-203ENSMUST00000107909 6436 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
Lire1P11260 Gm17746-201ENSMUST00000223429 3772 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Lire1P11260 Arhgap30-201ENSMUST00000056449 4494 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Lire1P11260 Adgrl3-201ENSMUST00000036068 6203 ntAPPRIS ALT2 TSL 5 BASIC11.91□□□□□ -0.5
Lire1P11260 Adgrl3-202ENSMUST00000072521 6203 ntAPPRIS P3 TSL 5 BASIC11.91□□□□□ -0.5
Lire1P11260 Scyl2-201ENSMUST00000092227 3566 ntAPPRIS ALT1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Lire1P11260 Nectin4-202ENSMUST00000094325 3245 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Lire1P11260 Cyb5rl-203ENSMUST00000106758 2516 ntAPPRIS P1 TSL 5 BASIC11.91□□□□□ -0.5
Lire1P11260 Slc39a9-204ENSMUST00000217889 2155 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Lire1P11260 Yif1a-201ENSMUST00000025811 1493 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Lire1P11260 Psmd8-207ENSMUST00000209034 1983 ntTSL 2 BASIC11.91□□□□□ -0.5
Lire1P11260 Slc38a3-203ENSMUST00000177567 2456 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Lire1P11260 Slc38a3-209ENSMUST00000193932 2463 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Lire1P11260 Nmi-205ENSMUST00000145481 1162 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Lire1P11260 Zdhhc4-208ENSMUST00000161915 1216 ntAPPRIS P1 TSL 5 BASIC11.91□□□□□ -0.5
Lire1P11260 Tspan17-208ENSMUST00000163915 459 ntTSL 5 BASIC11.91□□□□□ -0.5
Lire1P11260 Gm26542-201ENSMUST00000180443 1235 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Lire1P11260 1700080E11Rik-202ENSMUST00000190661 682 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Lire1P11260 Dnd1-ps-201ENSMUST00000196992 964 ntBASIC11.91□□□□□ -0.5
Lire1P11260 AC165254.1-201ENSMUST00000220736 599 ntTSL 5 BASIC11.91□□□□□ -0.5
Lire1P11260 AC153144.2-201ENSMUST00000221766 451 ntTSL 5 BASIC11.91□□□□□ -0.5
Lire1P11260 Olfr569-201ENSMUST00000078191 945 ntAPPRIS P1 BASIC11.91□□□□□ -0.5
Lire1P11260 Olfr582-201ENSMUST00000098212 960 ntBASIC11.91□□□□□ -0.5
Lire1P11260 B230118H07Rik-202ENSMUST00000099682 895 ntAPPRIS ALT2 TSL 5 BASIC11.91□□□□□ -0.5
Lire1P11260 Dbx2-201ENSMUST00000054244 3460 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Lire1P11260 Kyat1-204ENSMUST00000113661 2057 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Lire1P11260 Foxm1-202ENSMUST00000112148 2229 ntAPPRIS ALT2 TSL 5 BASIC11.91□□□□□ -0.5
Lire1P11260 Kirrel2-201ENSMUST00000045817 3352 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Lire1P11260 Abca3-201ENSMUST00000039013 6476 ntAPPRIS P2 TSL 1 (best) BASIC11.91□□□□□ -0.5
Lire1P11260 Nrd1-201ENSMUST00000065977 4311 ntAPPRIS P3 TSL 1 (best) BASIC11.91□□□□□ -0.5
Lire1P11260 Lrrc34-201ENSMUST00000029252 1891 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Lire1P11260 Saraf-201ENSMUST00000033933 1860 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Lire1P11260 Rbm47-202ENSMUST00000094757 4643 ntAPPRIS P3 TSL 1 (best) BASIC11.91□□□□□ -0.5
Lire1P11260 Tktl2-201ENSMUST00000002025 2021 ntAPPRIS P1 BASIC11.91□□□□□ -0.5
Lire1P11260 Grid1-201ENSMUST00000043349 5720 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Lire1P11260 Rab11fip4os1-201ENSMUST00000145652 2187 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Lire1P11260 Usp22-201ENSMUST00000041683 4434 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Lire1P11260 Sh3pxd2a-202ENSMUST00000111800 10380 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
Lire1P11260 BC051537-201ENSMUST00000183290 1668 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Lire1P11260 Rbm6-207ENSMUST00000183032 3716 ntAPPRIS ALT2 TSL 1 (best) BASIC11.9□□□□□ -0.5
Lire1P11260 Nol4l-202ENSMUST00000109784 5610 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Lire1P11260 Clec18a-203ENSMUST00000188466 1973 ntAPPRIS ALT2 TSL 5 BASIC11.9□□□□□ -0.5
Lire1P11260 Clec18a-201ENSMUST00000039597 1998 ntAPPRIS P5 TSL 5 BASIC11.9□□□□□ -0.5
Lire1P11260 Lig1-201ENSMUST00000098814 3091 ntAPPRIS P1 TSL 5 BASIC11.9□□□□□ -0.5
Lire1P11260 Thoc5-202ENSMUST00000101615 2116 ntTSL 5 BASIC11.9□□□□□ -0.5
Lire1P11260 Madd-207ENSMUST00000111369 5582 ntAPPRIS ALT2 TSL 5 BASIC11.9□□□□□ -0.5
Lire1P11260 Gm42449-201ENSMUST00000200349 2258 ntBASIC11.9□□□□□ -0.5
Lire1P11260 Jmjd1c-211ENSMUST00000174408 8377 ntAPPRIS ALT2 TSL 5 BASIC11.9□□□□□ -0.5
Lire1P11260 Jmjd1c-201ENSMUST00000051446 8382 ntAPPRIS P4 TSL 5 BASIC11.9□□□□□ -0.5
Lire1P11260 Cdc25a-204ENSMUST00000198308 2880 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Lire1P11260 Pars2-202ENSMUST00000106781 3046 ntAPPRIS ALT2 TSL 1 (best) BASIC11.9□□□□□ -0.5
Lire1P11260 Gm11766-201ENSMUST00000143428 3018 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Lire1P11260 Neat1-202ENSMUST00000174287 3004 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Lire1P11260 Smpd2-201ENSMUST00000019965 1602 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Lire1P11260 Trp63-207ENSMUST00000115308 2380 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Lire1P11260 Bud13-201ENSMUST00000074957 2539 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Lire1P11260 Col6a6-202ENSMUST00000098441 8781 ntAPPRIS P2 TSL 5 BASIC11.9□□□□□ -0.5
Lire1P11260 Cyth3-202ENSMUST00000116456 3738 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Lire1P11260 Pcdh8-204ENSMUST00000195355 3704 ntAPPRIS ALT2 TSL 1 (best) BASIC11.9□□□□□ -0.5
Lire1P11260 Tspyl4-201ENSMUST00000047935 3879 ntAPPRIS P1 BASIC11.9□□□□□ -0.5
Lire1P11260 Baiap3-202ENSMUST00000182056 4645 ntAPPRIS P2 TSL 1 (best) BASIC11.9□□□□□ -0.5
Lire1P11260 Pcnt-201ENSMUST00000001179 9331 ntAPPRIS P2 TSL 2 BASIC11.9□□□□□ -0.5
Lire1P11260 Snap25-202ENSMUST00000110098 1014 ntAPPRIS ALT1 TSL 3 BASIC11.9□□□□□ -0.5
Lire1P11260 Mkl2-203ENSMUST00000115809 667 ntTSL 2 BASIC11.9□□□□□ -0.5
Lire1P11260 Gm5385-201ENSMUST00000118988 1559 ntBASIC11.9□□□□□ -0.5
Lire1P11260 Gm16177-201ENSMUST00000120728 718 ntBASIC11.9□□□□□ -0.5
Lire1P11260 Gm10156-201ENSMUST00000122364 462 ntBASIC11.9□□□□□ -0.5
Lire1P11260 Gm6152-201ENSMUST00000151704 340 ntBASIC11.9□□□□□ -0.5
Lire1P11260 Gm27572-201ENSMUST00000183702 255 ntBASIC11.9□□□□□ -0.5
Lire1P11260 1700029H14Rik-205ENSMUST00000187391 1408 ntAPPRIS P3 TSL 1 (best) BASIC11.9□□□□□ -0.5
Lire1P11260 1700113H08Rik-202ENSMUST00000189456 974 ntTSL 5 BASIC11.9□□□□□ -0.5
Lire1P11260 Chfr-212ENSMUST00000200038 606 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Lire1P11260 Gm43303-201ENSMUST00000200133 669 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Lire1P11260 Ces5a-203ENSMUST00000212009 2042 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Lire1P11260 Gm7172-201ENSMUST00000218047 1152 ntBASIC11.9□□□□□ -0.5
Lire1P11260 Clps-201ENSMUST00000025062 550 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Lire1P11260 Slc38a8-201ENSMUST00000036748 2623 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Lire1P11260 Apol7c-201ENSMUST00000062562 2044 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Retrieved 100 of 76,532 protein–RNA pairs in 32.5 ms