Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Gm18626-201ENSMUST00000221512 1409 ntBASIC14.71□□□□□ -0.05
Trim56Q80VI1 Fam110a-203ENSMUST00000109864 1591 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Trim56Q80VI1 Scyl2-201ENSMUST00000092227 3566 ntAPPRIS ALT1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Trim56Q80VI1 Ralgapb-203ENSMUST00000109486 8383 ntAPPRIS P2 TSL 1 (best) BASIC14.71□□□□□ -0.05
Trim56Q80VI1 Gm5592-202ENSMUST00000206490 2623 ntAPPRIS P1 TSL 5 BASIC14.71□□□□□ -0.06
Trim56Q80VI1 Evx1os-201ENSMUST00000125305 2916 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
Trim56Q80VI1 Chrnd-201ENSMUST00000073252 2925 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
Trim56Q80VI1 Rasa3-201ENSMUST00000117551 4404 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
Trim56Q80VI1 Fgfr1-201ENSMUST00000084027 5025 ntAPPRIS P3 TSL 5 BASIC14.71□□□□□ -0.06
Trim56Q80VI1 Gm5780-201ENSMUST00000217774 1834 ntBASIC14.71□□□□□ -0.06
Trim56Q80VI1 Chrna9-201ENSMUST00000031108 1843 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
Trim56Q80VI1 Mfsd4a-207ENSMUST00000159038 1957 ntAPPRIS P2 TSL 5 BASIC14.71□□□□□ -0.06
Trim56Q80VI1 Eef1akmt3-201ENSMUST00000116231 2719 ntAPPRIS P1 TSL 5 BASIC14.71□□□□□ -0.06
Trim56Q80VI1 Hid1-202ENSMUST00000106542 3276 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
Trim56Q80VI1 Calu-202ENSMUST00000090481 2670 ntAPPRIS ALT1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Trim56Q80VI1 AC122197.2-201ENSMUST00000219196 1635 ntBASIC14.7□□□□□ -0.06
Trim56Q80VI1 Dusp19-201ENSMUST00000028384 1632 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Trim56Q80VI1 Cyp2j13-203ENSMUST00000107078 1493 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
Trim56Q80VI1 Cdc14a-202ENSMUST00000106491 4292 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
Trim56Q80VI1 Uhrf1bp1l-201ENSMUST00000020112 6448 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Trim56Q80VI1 Klhl8-203ENSMUST00000112815 2898 ntTSL 5 BASIC14.7□□□□□ -0.06
Trim56Q80VI1 Gm44207-201ENSMUST00000204568 1424 ntBASIC14.7□□□□□ -0.06
Trim56Q80VI1 Cela2a-201ENSMUST00000102481 1070 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Trim56Q80VI1 Rpl3-ps1-201ENSMUST00000120557 1210 ntBASIC14.7□□□□□ -0.06
Trim56Q80VI1 Gm13391-202ENSMUST00000147685 816 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
Trim56Q80VI1 Gm13832-202ENSMUST00000151159 370 ntTSL 3 BASIC14.7□□□□□ -0.06
Trim56Q80VI1 Aif1-203ENSMUST00000172693 842 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Trim56Q80VI1 Gm20470-201ENSMUST00000174654 331 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
Trim56Q80VI1 Gm27046-201ENSMUST00000182160 463 ntBASIC14.7□□□□□ -0.06
Trim56Q80VI1 Gm4857-201ENSMUST00000192718 785 ntBASIC14.7□□□□□ -0.06
Trim56Q80VI1 Gm44967-201ENSMUST00000207047 631 ntBASIC14.7□□□□□ -0.06
Trim56Q80VI1 AC166344.1-202ENSMUST00000224139 234 ntBASIC14.7□□□□□ -0.06
Trim56Q80VI1 Cbx3-ps1-201ENSMUST00000091539 545 ntBASIC14.7□□□□□ -0.06
Trim56Q80VI1 Clpx-202ENSMUST00000113824 2809 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
Trim56Q80VI1 Drd1-201ENSMUST00000021932 3526 ntAPPRIS P2 TSL 1 (best) BASIC14.7□□□□□ -0.06
Trim56Q80VI1 Slc39a8-206ENSMUST00000180196 3383 ntAPPRIS P1 TSL 5 BASIC14.7□□□□□ -0.06
Trim56Q80VI1 Hdac5-203ENSMUST00000107151 4852 ntTSL 5 BASIC14.7□□□□□ -0.06
Trim56Q80VI1 Grid2ip-203ENSMUST00000120825 3865 ntTSL 5 BASIC14.7□□□□□ -0.06
Trim56Q80VI1 Tomt-202ENSMUST00000106970 1354 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Trim56Q80VI1 Irx3os-203ENSMUST00000133528 1354 ntTSL 5 BASIC14.7□□□□□ -0.06
Trim56Q80VI1 AC126444.1-201ENSMUST00000225938 1768 ntBASIC14.7□□□□□ -0.06
Trim56Q80VI1 Trmt1l-201ENSMUST00000065625 2749 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Trim56Q80VI1 Zbtb7b-202ENSMUST00000107432 3639 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Trim56Q80VI1 Jmjd8-205ENSMUST00000133595 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
Trim56Q80VI1 Wdr25-202ENSMUST00000167816 2657 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
Trim56Q80VI1 Cebpd-201ENSMUST00000096232 3746 ntAPPRIS P1 BASIC14.69□□□□□ -0.06
Trim56Q80VI1 Pik3r1-201ENSMUST00000035532 2923 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
Trim56Q80VI1 Ebp-201ENSMUST00000033509 1743 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Trim56Q80VI1 Sgf29-201ENSMUST00000032956 1312 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Trim56Q80VI1 Trhr2-201ENSMUST00000044123 1340 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Trim56Q80VI1 Cog6-201ENSMUST00000036665 3182 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Trim56Q80VI1 Styxl1-201ENSMUST00000053906 1582 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Trim56Q80VI1 Map4k1-203ENSMUST00000208227 2720 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
Trim56Q80VI1 Map4k1-201ENSMUST00000085835 2724 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Trim56Q80VI1 Asl-202ENSMUST00000159619 2088 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
Trim56Q80VI1 Fam160a2-202ENSMUST00000074686 3212 ntAPPRIS ALT2 TSL 5 BASIC14.69□□□□□ -0.06
Trim56Q80VI1 Fastkd3-201ENSMUST00000051784 2421 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Trim56Q80VI1 Prr29-202ENSMUST00000106816 771 ntAPPRIS P2 TSL 1 (best) BASIC14.69□□□□□ -0.06
Trim56Q80VI1 Gm11595-201ENSMUST00000107440 1200 ntAPPRIS P1 BASIC14.69□□□□□ -0.06
Trim56Q80VI1 Gm4760-201ENSMUST00000119663 1030 ntBASIC14.69□□□□□ -0.06
Trim56Q80VI1 4933406I18Rik-201ENSMUST00000124673 905 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
Trim56Q80VI1 Pyy-202ENSMUST00000127381 529 ntAPPRIS ALT2 TSL 2 BASIC14.69□□□□□ -0.06
Trim56Q80VI1 Sncb-202ENSMUST00000134110 722 ntAPPRIS P1 TSL 3 BASIC14.69□□□□□ -0.06
Trim56Q80VI1 Pdxk-ps-202ENSMUST00000160550 876 ntBASIC14.69□□□□□ -0.06
Trim56Q80VI1 Gm9630-201ENSMUST00000178304 885 ntBASIC14.69□□□□□ -0.06
Trim56Q80VI1 Gm28192-201ENSMUST00000189381 778 ntTSL 5 BASIC14.69□□□□□ -0.06
Trim56Q80VI1 S100a3-204ENSMUST00000200290 509 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Trim56Q80VI1 CT009713.10-202ENSMUST00000225734 696 ntBASIC14.69□□□□□ -0.06
Trim56Q80VI1 AC126253.1-202ENSMUST00000226732 835 ntBASIC14.69□□□□□ -0.06
Trim56Q80VI1 Dhrs2-201ENSMUST00000022820 1268 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Trim56Q80VI1 Fn3k-201ENSMUST00000026175 1047 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Trim56Q80VI1 Fam241b-201ENSMUST00000027719 771 ntTSL 3 BASIC14.69□□□□□ -0.06
Trim56Q80VI1 Gm10312-201ENSMUST00000078515 489 ntBASIC14.69□□□□□ -0.06
Trim56Q80VI1 Cttnbp2nl-202ENSMUST00000098763 4834 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Trim56Q80VI1 Hao1-201ENSMUST00000028704 2045 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Trim56Q80VI1 Shisa3-201ENSMUST00000087241 3760 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Trim56Q80VI1 Nol4-206ENSMUST00000164186 2622 ntAPPRIS P4 TSL 5 BASIC14.69□□□□□ -0.06
Trim56Q80VI1 Pdyn-201ENSMUST00000028883 2386 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Trim56Q80VI1 Dner-201ENSMUST00000049126 3632 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Trim56Q80VI1 A630014C17Rik-201ENSMUST00000150973 2984 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
Trim56Q80VI1 Ccdc162-203ENSMUST00000099932 2742 ntTSL 5 BASIC14.69□□□□□ -0.06
Trim56Q80VI1 Hnrnpa2b1-203ENSMUST00000114459 1728 ntAPPRIS ALT1 TSL 5 BASIC14.69□□□□□ -0.06
Trim56Q80VI1 Arid5a-208ENSMUST00000137906 5504 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
Trim56Q80VI1 Unk-202ENSMUST00000106452 3696 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
Trim56Q80VI1 2900026A02Rik-201ENSMUST00000050125 5876 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.06
Trim56Q80VI1 Prss43-201ENSMUST00000077549 2327 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Trim56Q80VI1 Zfp444-204ENSMUST00000108567 5104 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Trim56Q80VI1 Sp7-201ENSMUST00000078508 2906 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Trim56Q80VI1 Mrap2-201ENSMUST00000049457 1931 ntAPPRIS P1 TSL 3 BASIC14.68□□□□□ -0.06
Trim56Q80VI1 1700088E04Rik-212ENSMUST00000190959 1403 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
Trim56Q80VI1 Ptch2-201ENSMUST00000030443 4382 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Trim56Q80VI1 Thtpa-201ENSMUST00000050575 2830 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Trim56Q80VI1 Ap3d1-201ENSMUST00000020420 4805 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Trim56Q80VI1 Mob1a-202ENSMUST00000055261 4412 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Trim56Q80VI1 Vps4b-202ENSMUST00000112736 4539 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Trim56Q80VI1 Gm24830-201ENSMUST00000102024 166 ntBASIC14.68□□□□□ -0.06
Trim56Q80VI1 Gm24934-201ENSMUST00000103764 111 ntBASIC14.68□□□□□ -0.06
Trim56Q80VI1 Vps25-204ENSMUST00000107280 876 ntTSL 2 BASIC14.68□□□□□ -0.06
Trim56Q80VI1 C330007P06Rik-203ENSMUST00000115249 1145 ntTSL 5 BASIC14.68□□□□□ -0.06
Trim56Q80VI1 Gm25668-201ENSMUST00000157700 129 ntBASIC14.68□□□□□ -0.06
Retrieved 100 of 76,532 protein–RNA pairs in 35.9 ms