Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Lrrc57-203ENSMUST00000102498 1901 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
Upf3bQ3ULL6 Gm44089-201ENSMUST00000203624 1930 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Upf3bQ3ULL6 Gm2694-202ENSMUST00000180806 1452 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Upf3bQ3ULL6 Jmjd8-205ENSMUST00000133595 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
Upf3bQ3ULL6 Chchd3-202ENSMUST00000115091 1363 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Upf3bQ3ULL6 Cnmd-203ENSMUST00000165835 1362 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
Upf3bQ3ULL6 Med8-204ENSMUST00000106384 1743 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Upf3bQ3ULL6 Nhlh2-203ENSMUST00000198675 3943 ntAPPRIS P1 TSL 2 BASIC13.37□□□□□ -0.27
Upf3bQ3ULL6 Pnpla6-211ENSMUST00000207941 4263 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Upf3bQ3ULL6 Tpm1-207ENSMUST00000113687 962 ntTSL 5 BASIC13.37□□□□□ -0.27
Upf3bQ3ULL6 Thoc6-204ENSMUST00000115490 1157 ntTSL 5 BASIC13.37□□□□□ -0.27
Upf3bQ3ULL6 Gm15370-201ENSMUST00000117158 253 ntBASIC13.37□□□□□ -0.27
Upf3bQ3ULL6 Gm4986-201ENSMUST00000119731 549 ntBASIC13.37□□□□□ -0.27
Upf3bQ3ULL6 Gm13297-201ENSMUST00000120205 934 ntBASIC13.37□□□□□ -0.27
Upf3bQ3ULL6 Bcas1os1-201ENSMUST00000133586 1239 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Upf3bQ3ULL6 Hoxb5os-202ENSMUST00000150698 596 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Upf3bQ3ULL6 Cox6b2-204ENSMUST00000182173 391 ntTSL 2 BASIC13.37□□□□□ -0.27
Upf3bQ3ULL6 Olfr1414-202ENSMUST00000189174 1159 ntAPPRIS P1 TSL 3 BASIC13.37□□□□□ -0.27
Upf3bQ3ULL6 Gm19710-201ENSMUST00000200257 640 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Upf3bQ3ULL6 Gm19963-201ENSMUST00000208413 1255 ntBASIC13.37□□□□□ -0.27
Upf3bQ3ULL6 Taar7e-201ENSMUST00000092656 1077 ntAPPRIS P1 BASIC13.37□□□□□ -0.27
Upf3bQ3ULL6 Pgm3-201ENSMUST00000070064 2666 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Upf3bQ3ULL6 Sufu-204ENSMUST00000120778 1850 ntTSL 2 BASIC13.37□□□□□ -0.27
Upf3bQ3ULL6 6030442K20Rik-201ENSMUST00000180835 1540 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Upf3bQ3ULL6 Dnm1-202ENSMUST00000091089 3764 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Upf3bQ3ULL6 Gimap3-202ENSMUST00000204036 2145 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Upf3bQ3ULL6 Farsb-202ENSMUST00000170217 2036 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Upf3bQ3ULL6 Prkcsh-201ENSMUST00000003493 2012 ntAPPRIS P3 TSL 1 (best) BASIC13.37□□□□□ -0.27
Upf3bQ3ULL6 Gsn-205ENSMUST00000201185 2607 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
Upf3bQ3ULL6 Tbc1d14-205ENSMUST00000136189 4436 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Upf3bQ3ULL6 Nmt2-202ENSMUST00000091504 1676 ntTSL 5 BASIC13.37□□□□□ -0.27
Upf3bQ3ULL6 Cdv3-203ENSMUST00000116517 3741 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Upf3bQ3ULL6 Gm4735-201ENSMUST00000138679 1302 ntBASIC13.37□□□□□ -0.27
Upf3bQ3ULL6 Gm5855-201ENSMUST00000200240 1305 ntBASIC13.37□□□□□ -0.27
Upf3bQ3ULL6 Mcm8-202ENSMUST00000066559 3397 ntAPPRIS P3 TSL 1 (best) BASIC13.37□□□□□ -0.27
Upf3bQ3ULL6 Cacna2d1-203ENSMUST00000101581 3879 ntAPPRIS P2 TSL 1 (best) BASIC13.37□□□□□ -0.27
Upf3bQ3ULL6 Tmem132a-202ENSMUST00000120524 3895 ntTSL 5 BASIC13.37□□□□□ -0.27
Upf3bQ3ULL6 Cacna2d1-206ENSMUST00000180204 3882 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Upf3bQ3ULL6 Bcl6-201ENSMUST00000023151 3525 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Upf3bQ3ULL6 2410002F23Rik-203ENSMUST00000084937 2092 ntAPPRIS P2 TSL 2 BASIC13.36□□□□□ -0.27
Upf3bQ3ULL6 Ccng2-202ENSMUST00000121127 2570 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Upf3bQ3ULL6 Gm12968-201ENSMUST00000138291 1454 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Upf3bQ3ULL6 Gm18227-201ENSMUST00000211082 1468 ntBASIC13.36□□□□□ -0.27
Upf3bQ3ULL6 Ppp2r5c-204ENSMUST00000221074 1971 ntTSL 5 BASIC13.36□□□□□ -0.27
Upf3bQ3ULL6 Prkcd-204ENSMUST00000112206 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
Upf3bQ3ULL6 Med28-205ENSMUST00000156481 4560 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Upf3bQ3ULL6 Arhgap25-202ENSMUST00000101197 2493 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Upf3bQ3ULL6 Gm37737-201ENSMUST00000195013 1638 ntBASIC13.36□□□□□ -0.27
Upf3bQ3ULL6 Gm42853-201ENSMUST00000201273 1387 ntBASIC13.36□□□□□ -0.27
Upf3bQ3ULL6 Rxfp3-201ENSMUST00000058007 4275 ntAPPRIS P1 BASIC13.36□□□□□ -0.27
Upf3bQ3ULL6 Hspa9-201ENSMUST00000025217 3049 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Upf3bQ3ULL6 Chrna10-201ENSMUST00000084830 2513 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Upf3bQ3ULL6 Treh-201ENSMUST00000034609 2048 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Upf3bQ3ULL6 Pigp-205ENSMUST00000113917 805 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Upf3bQ3ULL6 Gm13342-201ENSMUST00000121055 207 ntBASIC13.36□□□□□ -0.27
Upf3bQ3ULL6 Rps2-ps9-201ENSMUST00000121414 817 ntBASIC13.36□□□□□ -0.27
Upf3bQ3ULL6 Acyp1-204ENSMUST00000121930 634 ntTSL 2 BASIC13.36□□□□□ -0.27
Upf3bQ3ULL6 Gm14230-202ENSMUST00000137463 874 ntTSL 2 BASIC13.36□□□□□ -0.27
Upf3bQ3ULL6 1700066O22Rik-203ENSMUST00000150994 961 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Upf3bQ3ULL6 Klk11-202ENSMUST00000171458 1260 ntAPPRIS P3 TSL 2 BASIC13.36□□□□□ -0.27
Upf3bQ3ULL6 Gm2310-201ENSMUST00000179217 1131 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
Upf3bQ3ULL6 Gm9022-201ENSMUST00000182482 992 ntBASIC13.36□□□□□ -0.27
Upf3bQ3ULL6 Mocs2-215ENSMUST00000184335 646 ntTSL 5 BASIC13.36□□□□□ -0.27
Upf3bQ3ULL6 Rpl7a-ps2-201ENSMUST00000200554 774 ntBASIC13.36□□□□□ -0.27
Upf3bQ3ULL6 Gm8227-201ENSMUST00000223306 571 ntBASIC13.36□□□□□ -0.27
Upf3bQ3ULL6 Morn2-202ENSMUST00000227729 656 ntBASIC13.36□□□□□ -0.27
Upf3bQ3ULL6 Nr0b2-201ENSMUST00000042706 1132 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Upf3bQ3ULL6 Pak1-201ENSMUST00000033040 3065 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Upf3bQ3ULL6 Hs3st1-202ENSMUST00000117944 1686 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Upf3bQ3ULL6 Mast3-203ENSMUST00000211948 4251 ntAPPRIS P2 TSL 1 (best) BASIC13.36□□□□□ -0.27
Upf3bQ3ULL6 Picalm-213ENSMUST00000208742 3361 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
Upf3bQ3ULL6 Myo1d-202ENSMUST00000070997 3106 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Upf3bQ3ULL6 Caln1-201ENSMUST00000086029 1801 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Upf3bQ3ULL6 Unc45a-201ENSMUST00000032748 3260 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Upf3bQ3ULL6 Unk-202ENSMUST00000106452 3696 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
Upf3bQ3ULL6 Pianp-206ENSMUST00000162000 2396 ntAPPRIS ALT2 TSL 5 BASIC13.36□□□□□ -0.27
Upf3bQ3ULL6 Tonsl-207ENSMUST00000168185 4235 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Upf3bQ3ULL6 Dll1-201ENSMUST00000014917 3581 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Upf3bQ3ULL6 Gm4366-201ENSMUST00000201488 1342 ntBASIC13.36□□□□□ -0.27
Upf3bQ3ULL6 Gm19221-201ENSMUST00000221827 1477 ntBASIC13.36□□□□□ -0.27
Upf3bQ3ULL6 Plk2-201ENSMUST00000022212 2800 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Upf3bQ3ULL6 Wnt7b-201ENSMUST00000023015 3371 ntAPPRIS P3 TSL 1 (best) BASIC13.35□□□□□ -0.27
Upf3bQ3ULL6 Fuca2-201ENSMUST00000060212 2007 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Upf3bQ3ULL6 Apol7c-201ENSMUST00000062562 2044 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Upf3bQ3ULL6 Slc25a45-202ENSMUST00000125114 2599 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Upf3bQ3ULL6 Gramd1b-201ENSMUST00000045682 7488 ntAPPRIS P2 TSL 1 (best) BASIC13.35□□□□□ -0.27
Upf3bQ3ULL6 Allc-202ENSMUST00000110917 1384 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Upf3bQ3ULL6 Bckdhb-205ENSMUST00000190166 1398 ntAPPRIS P3 TSL 1 (best) BASIC13.35□□□□□ -0.27
Upf3bQ3ULL6 Dppa4-201ENSMUST00000050705 1378 ntAPPRIS ALT2 TSL 5 BASIC13.35□□□□□ -0.27
Upf3bQ3ULL6 Gprc5a-201ENSMUST00000050104 2083 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Upf3bQ3ULL6 Smad4-202ENSMUST00000114939 2233 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Upf3bQ3ULL6 Gm20700-201ENSMUST00000176749 2206 ntTSL 3 BASIC13.35□□□□□ -0.27
Upf3bQ3ULL6 Gm44241-201ENSMUST00000203230 1662 ntBASIC13.35□□□□□ -0.27
Upf3bQ3ULL6 Elk1-201ENSMUST00000009550 3548 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Upf3bQ3ULL6 Gtf2i-203ENSMUST00000111261 4381 ntAPPRIS ALT2 TSL 5 BASIC13.35□□□□□ -0.27
Upf3bQ3ULL6 Gm13875-201ENSMUST00000120162 282 ntBASIC13.35□□□□□ -0.27
Upf3bQ3ULL6 4933407E24Rik-201ENSMUST00000133499 969 ntTSL 2 BASIC13.35□□□□□ -0.27
Upf3bQ3ULL6 Gm27206-201ENSMUST00000154038 979 ntTSL 5 BASIC13.35□□□□□ -0.27
Upf3bQ3ULL6 Gm27023-201ENSMUST00000182372 285 ntBASIC13.35□□□□□ -0.27
Upf3bQ3ULL6 Gm2546-201ENSMUST00000182630 991 ntBASIC13.35□□□□□ -0.27
Retrieved 100 of 76,532 protein–RNA pairs in 345.1 ms