Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Galc-201ENSMUST00000021390 3832 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Col28a1Q2UY11 BC039966-201ENSMUST00000141582 1371 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Col28a1Q2UY11 Fyttd1-211ENSMUST00000171325 4295 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Col28a1Q2UY11 Odf3-202ENSMUST00000106049 1509 ntTSL 5 BASIC12.16□□□□□ -0.46
Col28a1Q2UY11 4930588K23Rik-201ENSMUST00000156827 1963 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Col28a1Q2UY11 Reln-207ENSMUST00000161356 11699 ntAPPRIS P3 TSL 5 BASIC12.16□□□□□ -0.46
Col28a1Q2UY11 Arhgef3-204ENSMUST00000225949 3198 ntBASIC12.16□□□□□ -0.46
Col28a1Q2UY11 Mast1-202ENSMUST00000119820 2078 ntTSL 5 BASIC12.15□□□□□ -0.46
Col28a1Q2UY11 Mcm9-204ENSMUST00000219838 4132 ntTSL 5 BASIC12.15□□□□□ -0.46
Col28a1Q2UY11 Gm17276-201ENSMUST00000180839 2782 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Col28a1Q2UY11 Atxn7l1os2-201ENSMUST00000138617 2019 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Col28a1Q2UY11 Nrf1-207ENSMUST00000115206 1879 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Col28a1Q2UY11 Pdcd4-202ENSMUST00000074371 2418 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Col28a1Q2UY11 Gm45338-207ENSMUST00000211499 1405 ntTSL 5 BASIC12.15□□□□□ -0.46
Col28a1Q2UY11 Kif1a-210ENSMUST00000190723 6141 ntTSL 5 BASIC12.15□□□□□ -0.46
Col28a1Q2UY11 Fmo2-202ENSMUST00000111510 2260 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Col28a1Q2UY11 Specc1-213ENSMUST00000202179 6676 ntAPPRIS ALT2 TSL 1 (best) BASIC12.15□□□□□ -0.46
Col28a1Q2UY11 Gm12291-201ENSMUST00000121627 311 ntBASIC12.15□□□□□ -0.46
Col28a1Q2UY11 Pyy-204ENSMUST00000177304 551 ntAPPRIS ALT2 TSL 2 BASIC12.15□□□□□ -0.46
Col28a1Q2UY11 AU022754-201ENSMUST00000180441 2976 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Col28a1Q2UY11 Ighv8-10-201ENSMUST00000199579 358 ntBASIC12.15□□□□□ -0.46
Col28a1Q2UY11 Gm44974-201ENSMUST00000206387 1279 ntBASIC12.15□□□□□ -0.46
Col28a1Q2UY11 Gm35368-201ENSMUST00000209554 1244 ntTSL 5 BASIC12.15□□□□□ -0.46
Col28a1Q2UY11 Degs2-201ENSMUST00000021691 1287 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Col28a1Q2UY11 Gm8227-201ENSMUST00000223306 571 ntBASIC12.15□□□□□ -0.46
Col28a1Q2UY11 Cyct-201ENSMUST00000028430 655 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Col28a1Q2UY11 Tpd52-204ENSMUST00000094381 1074 ntTSL 3 BASIC12.15□□□□□ -0.46
Col28a1Q2UY11 Atp1b2-201ENSMUST00000047889 2842 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Col28a1Q2UY11 Rnf26-205ENSMUST00000215685 1804 ntTSL 5 BASIC12.15□□□□□ -0.46
Col28a1Q2UY11 Acnat2-201ENSMUST00000081541 1664 ntAPPRIS P2 TSL 1 (best) BASIC12.15□□□□□ -0.46
Col28a1Q2UY11 Kremen1-201ENSMUST00000020662 4856 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Col28a1Q2UY11 Esco2-201ENSMUST00000022613 2913 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Col28a1Q2UY11 Krba1-203ENSMUST00000114571 6695 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Col28a1Q2UY11 Gm3764-205ENSMUST00000181134 2203 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Col28a1Q2UY11 Gm18630-201ENSMUST00000222109 1397 ntBASIC12.15□□□□□ -0.46
Col28a1Q2UY11 Myo18a-220ENSMUST00000164334 5381 ntAPPRIS ALT2 TSL 5 BASIC12.15□□□□□ -0.47
Col28a1Q2UY11 Rapgef2-201ENSMUST00000118100 6573 ntTSL 1 (best) BASIC12.15□□□□□ -0.47
Col28a1Q2UY11 Gabbr1-203ENSMUST00000172792 4036 ntTSL 1 (best) BASIC12.15□□□□□ -0.47
Col28a1Q2UY11 Actc1-201ENSMUST00000090269 1473 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Col28a1Q2UY11 Map1b-203ENSMUST00000223725 2669 ntBASIC12.14□□□□□ -0.47
Col28a1Q2UY11 Axl-202ENSMUST00000085948 3899 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
Col28a1Q2UY11 Pdik1l-201ENSMUST00000061234 4686 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Col28a1Q2UY11 AC149222.1-201ENSMUST00000154987 5188 ntAPPRIS P5 TSL 1 (best) BASIC12.14□□□□□ -0.47
Col28a1Q2UY11 Gfod2-201ENSMUST00000013294 4352 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Col28a1Q2UY11 Mfsd9-201ENSMUST00000039672 3160 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Col28a1Q2UY11 Gga3-201ENSMUST00000019135 3816 ntAPPRIS P3 TSL 1 (best) BASIC12.14□□□□□ -0.47
Col28a1Q2UY11 Plekhn1-203ENSMUST00000217885 1982 ntTSL 5 BASIC12.14□□□□□ -0.47
Col28a1Q2UY11 Eif4a2-223ENSMUST00000168891 2203 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Col28a1Q2UY11 Plxna1-201ENSMUST00000049845 5810 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Col28a1Q2UY11 Mettl13-201ENSMUST00000028017 4541 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Col28a1Q2UY11 Il2rg-201ENSMUST00000033664 1670 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Col28a1Q2UY11 Chil1-201ENSMUST00000082060 1687 ntAPPRIS P2 TSL 1 (best) BASIC12.14□□□□□ -0.47
Col28a1Q2UY11 Dlk1-202ENSMUST00000109841 879 ntTSL 5 BASIC12.14□□□□□ -0.47
Col28a1Q2UY11 Gm15198-201ENSMUST00000117283 177 ntBASIC12.14□□□□□ -0.47
Col28a1Q2UY11 Fuom-203ENSMUST00000121115 872 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Col28a1Q2UY11 Myadml2os-201ENSMUST00000126642 1044 ntTSL 5 BASIC12.14□□□□□ -0.47
Col28a1Q2UY11 Pisd-ps2-202ENSMUST00000142526 1175 ntBASIC12.14□□□□□ -0.47
Col28a1Q2UY11 Gm12057-202ENSMUST00000189990 882 ntAPPRIS P1 TSL 5 BASIC12.14□□□□□ -0.47
Col28a1Q2UY11 Gm38411-201ENSMUST00000197971 941 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Col28a1Q2UY11 Tgif2-ps1-201ENSMUST00000203590 713 ntBASIC12.14□□□□□ -0.47
Col28a1Q2UY11 Gm9299-201ENSMUST00000206392 1140 ntBASIC12.14□□□□□ -0.47
Col28a1Q2UY11 Cd37-201ENSMUST00000033063 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
Col28a1Q2UY11 Ndufa3-201ENSMUST00000076657 515 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Col28a1Q2UY11 Olfr569-201ENSMUST00000078191 945 ntAPPRIS P1 BASIC12.14□□□□□ -0.47
Col28a1Q2UY11 Olfr582-201ENSMUST00000098212 960 ntBASIC12.14□□□□□ -0.47
Col28a1Q2UY11 Tekt4-201ENSMUST00000025002 1532 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Col28a1Q2UY11 Ush1c-206ENSMUST00000154292 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
Col28a1Q2UY11 Ptger4-201ENSMUST00000047379 3264 ntAPPRIS P3 TSL 1 (best) BASIC12.14□□□□□ -0.47
Col28a1Q2UY11 Prkch-201ENSMUST00000021527 3545 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Col28a1Q2UY11 Pax6-203ENSMUST00000111082 3116 ntAPPRIS ALT1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Col28a1Q2UY11 Lrrc27-201ENSMUST00000016124 2113 ntAPPRIS P3 TSL 1 (best) BASIC12.14□□□□□ -0.47
Col28a1Q2UY11 Fam71f1-204ENSMUST00000166462 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Col28a1Q2UY11 Gm4219-201ENSMUST00000168140 2143 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Col28a1Q2UY11 Prrxl1-201ENSMUST00000068938 1610 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Col28a1Q2UY11 Nat3-201ENSMUST00000070514 1395 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Col28a1Q2UY11 Col14a1-201ENSMUST00000023053 6457 ntAPPRIS ALT1 TSL 5 BASIC12.14□□□□□ -0.47
Col28a1Q2UY11 Runx1-202ENSMUST00000113956 4738 ntAPPRIS P3 TSL 1 (best) BASIC12.14□□□□□ -0.47
Col28a1Q2UY11 Ttbk2-203ENSMUST00000085840 11152 ntAPPRIS P1 TSL 5 BASIC12.14□□□□□ -0.47
Col28a1Q2UY11 Npr2-202ENSMUST00000107874 3480 ntTSL 5 BASIC12.14□□□□□ -0.47
Col28a1Q2UY11 Grid2ip-201ENSMUST00000010969 3459 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Col28a1Q2UY11 9530077C05Rik-201ENSMUST00000058868 2223 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Col28a1Q2UY11 Plekhg5-204ENSMUST00000118648 3818 ntAPPRIS ALT2 TSL 5 BASIC12.14□□□□□ -0.47
Col28a1Q2UY11 Foxj3-202ENSMUST00000106310 4660 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
Col28a1Q2UY11 Ppm1b-204ENSMUST00000112307 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
Col28a1Q2UY11 Kank4-201ENSMUST00000102790 4795 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Col28a1Q2UY11 Epha5-206ENSMUST00000113406 4606 ntAPPRIS ALT2 TSL 5 BASIC12.14□□□□□ -0.47
Col28a1Q2UY11 Ap1g2-201ENSMUST00000036041 2673 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Col28a1Q2UY11 Fetub-201ENSMUST00000023587 1573 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Col28a1Q2UY11 Rtbdn-201ENSMUST00000067472 1908 ntAPPRIS P2 TSL 1 (best) BASIC12.13□□□□□ -0.47
Col28a1Q2UY11 Ptbp1-216ENSMUST00000172282 3110 ntAPPRIS P4 TSL 1 (best) BASIC12.13□□□□□ -0.47
Col28a1Q2UY11 Runx1-201ENSMUST00000023673 5861 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
Col28a1Q2UY11 Tacr2-201ENSMUST00000020278 2258 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Col28a1Q2UY11 Cnot7-211ENSMUST00000149992 2982 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Col28a1Q2UY11 Gm28373-201ENSMUST00000178129 2724 ntTSL 2 BASIC12.13□□□□□ -0.47
Col28a1Q2UY11 Gm5422-201ENSMUST00000050717 2721 ntBASIC12.13□□□□□ -0.47
Col28a1Q2UY11 Fn1-213ENSMUST00000188674 7680 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
Col28a1Q2UY11 Fn1-217ENSMUST00000190780 7694 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
Col28a1Q2UY11 Hnrnpf-201ENSMUST00000035493 2147 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Col28a1Q2UY11 Tifa-203ENSMUST00000164447 1538 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Col28a1Q2UY11 Slc9b1-201ENSMUST00000078568 2248 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Retrieved 100 of 76,532 protein–RNA pairs in 36.3 ms