Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Ccdc28a-203ENSMUST00000173243 590 ntTSL 5 BASIC10.81□□□□□ -0.68
Nkx3-1P97436 Gm28192-201ENSMUST00000189381 778 ntTSL 5 BASIC10.81□□□□□ -0.68
Nkx3-1P97436 Gm7003-201ENSMUST00000195089 312 ntBASIC10.81□□□□□ -0.68
Nkx3-1P97436 Gm17812-201ENSMUST00000204935 318 ntBASIC10.81□□□□□ -0.68
Nkx3-1P97436 Vdac1-201ENSMUST00000020673 891 ntTSL 5 BASIC10.81□□□□□ -0.68
Nkx3-1P97436 Gm31793-201ENSMUST00000218557 415 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
Nkx3-1P97436 Asphd1-201ENSMUST00000052937 730 ntAPPRIS P3 TSL 1 (best) BASIC10.81□□□□□ -0.68
Nkx3-1P97436 Rab13-201ENSMUST00000065418 1107 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Nkx3-1P97436 Cbs-203ENSMUST00000118504 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC10.81□□□□□ -0.68
Nkx3-1P97436 Exd2-201ENSMUST00000038185 3310 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Nkx3-1P97436 Gns-201ENSMUST00000040344 3855 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Nkx3-1P97436 Shbg-201ENSMUST00000005334 1419 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Nkx3-1P97436 2410131K14Rik-201ENSMUST00000049138 5649 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Nkx3-1P97436 Ugt1a2-201ENSMUST00000049289 2211 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Nkx3-1P97436 Crtc1-201ENSMUST00000076615 5683 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Nkx3-1P97436 Ankrd42-202ENSMUST00000118157 2782 ntAPPRIS P2 TSL 1 (best) BASIC10.81□□□□□ -0.68
Nkx3-1P97436 Cyth1-204ENSMUST00000106305 3179 ntAPPRIS ALT1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Nkx3-1P97436 Trp63-204ENSMUST00000115305 1729 ntAPPRIS ALT1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Nkx3-1P97436 Gm45242-201ENSMUST00000210666 2129 ntBASIC10.81□□□□□ -0.68
Nkx3-1P97436 Gm45706-201ENSMUST00000213063 2136 ntBASIC10.81□□□□□ -0.68
Nkx3-1P97436 Lrrc8e-201ENSMUST00000053035 3878 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Nkx3-1P97436 Cbx6-202ENSMUST00000109625 3056 ntAPPRIS ALT2 TSL 1 (best) BASIC10.81□□□□□ -0.68
Nkx3-1P97436 Bhlhb9-204ENSMUST00000180025 2812 ntAPPRIS P1 TSL 2 BASIC10.8□□□□□ -0.68
Nkx3-1P97436 B3gat2-201ENSMUST00000063663 5655 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Nkx3-1P97436 Sgip1-201ENSMUST00000066824 4305 ntAPPRIS ALT2 TSL 1 (best) BASIC10.8□□□□□ -0.68
Nkx3-1P97436 Arrdc4-201ENSMUST00000048068 3905 ntAPPRIS P3 TSL 1 (best) BASIC10.8□□□□□ -0.68
Nkx3-1P97436 A530013C23Rik-201ENSMUST00000130679 2555 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
Nkx3-1P97436 Metap2-206ENSMUST00000180840 2551 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Nkx3-1P97436 Gm28551-201ENSMUST00000144660 3142 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Nkx3-1P97436 Ppp3cb-205ENSMUST00000161445 3298 ntAPPRIS ALT2 TSL 1 (best) BASIC10.8□□□□□ -0.68
Nkx3-1P97436 Nub1-201ENSMUST00000068825 3269 ntAPPRIS P3 TSL 1 (best) BASIC10.8□□□□□ -0.68
Nkx3-1P97436 Rnf214-201ENSMUST00000058720 3964 ntAPPRIS P3 TSL 1 (best) BASIC10.8□□□□□ -0.68
Nkx3-1P97436 Coa4-201ENSMUST00000054310 1391 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Nkx3-1P97436 BC003965-201ENSMUST00000088307 3022 ntAPPRIS P1 TSL 2 BASIC10.8□□□□□ -0.68
Nkx3-1P97436 Dnmt3l-201ENSMUST00000000746 1676 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Nkx3-1P97436 Abo-202ENSMUST00000114045 1811 ntAPPRIS ALT2 TSL 5 BASIC10.8□□□□□ -0.68
Nkx3-1P97436 Irx6-201ENSMUST00000034185 3370 ntAPPRIS P3 TSL 1 (best) BASIC10.8□□□□□ -0.68
Nkx3-1P97436 Clec18a-203ENSMUST00000188466 1973 ntAPPRIS ALT2 TSL 5 BASIC10.8□□□□□ -0.68
Nkx3-1P97436 Acbd5-213ENSMUST00000227809 1986 ntAPPRIS ALT2 BASIC10.8□□□□□ -0.68
Nkx3-1P97436 Clec18a-201ENSMUST00000039597 1998 ntAPPRIS P5 TSL 5 BASIC10.8□□□□□ -0.68
Nkx3-1P97436 Wasl-201ENSMUST00000031695 4352 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Nkx3-1P97436 Spint5-201ENSMUST00000103097 443 ntAPPRIS P2 TSL 1 (best) BASIC10.8□□□□□ -0.68
Nkx3-1P97436 Tpm1-210ENSMUST00000113693 1054 ntTSL 5 BASIC10.8□□□□□ -0.68
Nkx3-1P97436 Gm12314-201ENSMUST00000118104 538 ntBASIC10.8□□□□□ -0.68
Nkx3-1P97436 Gm12286-201ENSMUST00000119246 1002 ntBASIC10.8□□□□□ -0.68
Nkx3-1P97436 Rtbdn-203ENSMUST00000121880 1223 ntAPPRIS P2 TSL 1 (best) BASIC10.8□□□□□ -0.68
Nkx3-1P97436 Bnip3-203ENSMUST00000130500 719 ntTSL 2 BASIC10.8□□□□□ -0.68
Nkx3-1P97436 Gm16339-201ENSMUST00000160954 929 ntTSL 5 BASIC10.8□□□□□ -0.68
Nkx3-1P97436 Aif1-203ENSMUST00000172693 842 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Nkx3-1P97436 Spint5-202ENSMUST00000180193 443 ntAPPRIS ALT2 TSL 5 BASIC10.8□□□□□ -0.68
Nkx3-1P97436 Ank3-234ENSMUST00000182993 1233 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
Nkx3-1P97436 Gm17087-201ENSMUST00000184183 471 ntAPPRIS P1 BASIC10.8□□□□□ -0.68
Nkx3-1P97436 A430093F15Rik-204ENSMUST00000186596 2115 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
Nkx3-1P97436 Gm43947-201ENSMUST00000203019 959 ntBASIC10.8□□□□□ -0.68
Nkx3-1P97436 Gm45598-202ENSMUST00000210719 986 ntBASIC10.8□□□□□ -0.68
Nkx3-1P97436 Pglyrp1-201ENSMUST00000032573 694 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Nkx3-1P97436 Abhd14a-201ENSMUST00000048685 1256 ntAPPRIS P1 TSL 5 BASIC10.8□□□□□ -0.68
Nkx3-1P97436 Ccdc28a-202ENSMUST00000080860 1190 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Nkx3-1P97436 Dnajc14-207ENSMUST00000219508 2298 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Nkx3-1P97436 Ucp3-201ENSMUST00000032958 2448 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Nkx3-1P97436 Gpr19-203ENSMUST00000111932 1711 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
Nkx3-1P97436 Gm45638-201ENSMUST00000211507 2878 ntBASIC10.8□□□□□ -0.68
Nkx3-1P97436 H2-Ob-202ENSMUST00000167280 1878 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
Nkx3-1P97436 Gm20605-201ENSMUST00000177545 4464 ntAPPRIS P1 TSL 2 BASIC10.8□□□□□ -0.68
Nkx3-1P97436 Gm26651-201ENSMUST00000181851 2325 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
Nkx3-1P97436 Clec16a-205ENSMUST00000115827 2949 ntAPPRIS ALT2 TSL 1 (best) BASIC10.8□□□□□ -0.68
Nkx3-1P97436 Rcan2-202ENSMUST00000044895 3363 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
Nkx3-1P97436 Mir17hg-201ENSMUST00000134140 3536 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
Nkx3-1P97436 Zfp367-201ENSMUST00000059817 3532 ntAPPRIS P2 TSL 1 (best) BASIC10.8□□□□□ -0.68
Nkx3-1P97436 Eno3-206ENSMUST00000170716 1461 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Nkx3-1P97436 Bpi-203ENSMUST00000109500 1911 ntAPPRIS ALT2 TSL 5 BASIC10.8□□□□□ -0.68
Nkx3-1P97436 Phkg1-201ENSMUST00000026617 2374 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Nkx3-1P97436 Lmbr1l-202ENSMUST00000109127 2548 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
Nkx3-1P97436 Txlng-203ENSMUST00000112315 2525 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
Nkx3-1P97436 Minos1-203ENSMUST00000143971 2549 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Nkx3-1P97436 Spock1-206ENSMUST00000189373 3128 ntTSL 5 BASIC10.8□□□□□ -0.68
Nkx3-1P97436 Lztr1-201ENSMUST00000023444 3112 ntAPPRIS P2 TSL 1 (best) BASIC10.8□□□□□ -0.68
Nkx3-1P97436 Kif1a-210ENSMUST00000190723 6141 ntTSL 5 BASIC10.8□□□□□ -0.68
Nkx3-1P97436 St13-205ENSMUST00000172107 3346 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Nkx3-1P97436 Sumf2-204ENSMUST00000171300 2264 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Nkx3-1P97436 Cd33-201ENSMUST00000004728 1962 ntAPPRIS ALT2 TSL 1 (best) BASIC10.79□□□□□ -0.68
Nkx3-1P97436 Gm21964-203ENSMUST00000219454 1513 ntAPPRIS P5 TSL 5 BASIC10.79□□□□□ -0.68
Nkx3-1P97436 Batf2-201ENSMUST00000045042 1391 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Nkx3-1P97436 Fam131b-202ENSMUST00000095974 3992 ntAPPRIS ALT1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Nkx3-1P97436 Csrnp1-201ENSMUST00000035101 2906 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Nkx3-1P97436 Arfip1-201ENSMUST00000098990 2799 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
Nkx3-1P97436 Nlrc3-203ENSMUST00000177551 5403 ntAPPRIS P1 TSL 2 BASIC10.79□□□□□ -0.68
Nkx3-1P97436 B230206H07Rik-202ENSMUST00000134845 3269 ntTSL 5 BASIC10.79□□□□□ -0.68
Nkx3-1P97436 Ms4a15-201ENSMUST00000087923 1713 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Nkx3-1P97436 Slc4a2-202ENSMUST00000115047 4264 ntAPPRIS ALT2 TSL 5 BASIC10.79□□□□□ -0.68
Nkx3-1P97436 Acin1-202ENSMUST00000022794 2365 ntAPPRIS ALT2 TSL 5 BASIC10.79□□□□□ -0.68
Nkx3-1P97436 Olfr239-201ENSMUST00000112165 948 ntAPPRIS P1 BASIC10.79□□□□□ -0.68
Nkx3-1P97436 Dixdc1-204ENSMUST00000118707 989 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
Nkx3-1P97436 Gm11985-201ENSMUST00000122910 1007 ntAPPRIS P1 TSL 5 BASIC10.79□□□□□ -0.68
Nkx3-1P97436 Dnajb6-202ENSMUST00000012734 1024 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
Nkx3-1P97436 Gm10714-201ENSMUST00000131346 874 ntTSL 2 BASIC10.79□□□□□ -0.68
Nkx3-1P97436 Sncb-202ENSMUST00000134110 722 ntAPPRIS P1 TSL 3 BASIC10.79□□□□□ -0.68
Nkx3-1P97436 Gm11752-201ENSMUST00000143291 510 ntTSL 2 BASIC10.79□□□□□ -0.68
Nkx3-1P97436 Gm27552-201ENSMUST00000183351 62 ntBASIC10.79□□□□□ -0.68
Nkx3-1P97436 Gm27844-201ENSMUST00000183613 62 ntBASIC10.79□□□□□ -0.68
Retrieved 100 of 76,532 protein–RNA pairs in 39.1 ms