Protein–RNA interactions for Protein: P79621

Ciita, MHC class II transactivator, mousemouse

Predictions only

Length 1,155 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CiitaP79621 4930528D03Rik-203ENSMUST00000225577 1348 ntBASIC13.53□□□□□ -0.24
CiitaP79621 Mtm1-203ENSMUST00000061970 3379 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CiitaP79621 5031415H12Rik-201ENSMUST00000181546 2481 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
CiitaP79621 Mapk8-204ENSMUST00000111944 1528 ntAPPRIS ALT1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CiitaP79621 Llgl2-212ENSMUST00000177736 3612 ntAPPRIS ALT2 TSL 2 BASIC13.53□□□□□ -0.24
CiitaP79621 Lins1-202ENSMUST00000077967 2647 ntAPPRIS ALT2 TSL 2 BASIC13.53□□□□□ -0.24
CiitaP79621 Aifm3-201ENSMUST00000023448 2688 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
CiitaP79621 Fam118b-202ENSMUST00000063782 1662 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
CiitaP79621 Mmgt2-203ENSMUST00000129162 1828 ntAPPRIS P1 TSL 5 BASIC13.53□□□□□ -0.24
CiitaP79621 Mpp3-204ENSMUST00000107168 3094 ntAPPRIS P1 TSL 5 BASIC13.53□□□□□ -0.24
CiitaP79621 A530072M11Rik-201ENSMUST00000151122 1852 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
CiitaP79621 Plcxd3-201ENSMUST00000061925 1851 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CiitaP79621 D330041H03Rik-205ENSMUST00000181014 1903 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
CiitaP79621 Msh4-201ENSMUST00000005630 3325 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.24
CiitaP79621 Kcnk16-202ENSMUST00000225596 2127 ntBASIC13.52□□□□□ -0.24
CiitaP79621 Trpv1-201ENSMUST00000006106 2340 ntAPPRIS ALT2 TSL 5 BASIC13.52□□□□□ -0.24
CiitaP79621 Spred3-201ENSMUST00000048923 4056 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
CiitaP79621 Gpr132-201ENSMUST00000021729 2478 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
CiitaP79621 Vmn1r198-202ENSMUST00000226786 6195 ntAPPRIS P2 BASIC13.52□□□□□ -0.24
CiitaP79621 Araf-203ENSMUST00000122312 2854 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
CiitaP79621 1810043G02Rik-202ENSMUST00000105398 899 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.25
CiitaP79621 Pom121l12-201ENSMUST00000117584 1039 ntAPPRIS P1 BASIC13.52□□□□□ -0.25
CiitaP79621 A430060F13Rik-201ENSMUST00000124176 378 ntBASIC13.52□□□□□ -0.25
CiitaP79621 Gm13165-201ENSMUST00000152923 383 ntTSL 5 BASIC13.52□□□□□ -0.25
CiitaP79621 Ccdc188-201ENSMUST00000167061 747 ntAPPRIS P1 TSL 5 BASIC13.52□□□□□ -0.25
CiitaP79621 H2al1g-201ENSMUST00000179859 509 ntAPPRIS P1 BASIC13.52□□□□□ -0.25
CiitaP79621 Gm32999-201ENSMUST00000192693 562 ntBASIC13.52□□□□□ -0.25
CiitaP79621 Gm44651-201ENSMUST00000207343 372 ntBASIC13.52□□□□□ -0.25
CiitaP79621 Gm45598-202ENSMUST00000210719 986 ntBASIC13.52□□□□□ -0.25
CiitaP79621 Gm31224-201ENSMUST00000212682 513 ntTSL 3 BASIC13.52□□□□□ -0.25
CiitaP79621 Mt2-202ENSMUST00000212806 388 ntTSL 2 BASIC13.52□□□□□ -0.25
CiitaP79621 1700011B04Rik-203ENSMUST00000220654 1033 ntTSL 5 BASIC13.52□□□□□ -0.25
CiitaP79621 1700011B04Rik-209ENSMUST00000221760 779 ntTSL 5 BASIC13.52□□□□□ -0.25
CiitaP79621 CT030182.1-201ENSMUST00000225935 533 ntBASIC13.52□□□□□ -0.25
CiitaP79621 Gm9996-201ENSMUST00000070359 913 ntBASIC13.52□□□□□ -0.25
CiitaP79621 Gm5580-201ENSMUST00000122096 1362 ntAPPRIS P1 BASIC13.52□□□□□ -0.25
CiitaP79621 Trim50-202ENSMUST00000111180 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.25
CiitaP79621 Sh3gl3-206ENSMUST00000179318 1489 ntTSL 5 BASIC13.52□□□□□ -0.25
CiitaP79621 Fam110a-203ENSMUST00000109864 1591 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
CiitaP79621 Phyhd1-212ENSMUST00000154647 1678 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
CiitaP79621 Rph3al-201ENSMUST00000021208 1690 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
CiitaP79621 Ankrd61-201ENSMUST00000079624 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.25
CiitaP79621 Armcx6-202ENSMUST00000113194 2120 ntAPPRIS P1 TSL 2 BASIC13.52□□□□□ -0.25
CiitaP79621 Ppp1r16b-201ENSMUST00000045503 6408 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
CiitaP79621 Txlng-203ENSMUST00000112315 2525 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
CiitaP79621 Rnf4-201ENSMUST00000030992 2895 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
CiitaP79621 Cmpk2-201ENSMUST00000020969 3200 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
CiitaP79621 Camsap3-202ENSMUST00000171962 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.25
CiitaP79621 Mrpl3-201ENSMUST00000035177 3972 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
CiitaP79621 Dnmt3b-208ENSMUST00000109772 4015 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.25
CiitaP79621 Itga3-203ENSMUST00000120375 4697 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.25
CiitaP79621 Pcdhgc3-201ENSMUST00000076807 4687 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CiitaP79621 Kcnt1-204ENSMUST00000114176 4166 ntAPPRIS ALT2 TSL 5 BASIC13.51□□□□□ -0.25
CiitaP79621 Pdgfra-205ENSMUST00000201711 4088 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
CiitaP79621 Tnfrsf21-201ENSMUST00000024708 3626 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CiitaP79621 Aacs-201ENSMUST00000031445 3239 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CiitaP79621 Phf13-201ENSMUST00000055688 3205 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CiitaP79621 Samd7-201ENSMUST00000108262 3144 ntAPPRIS P1 TSL 5 BASIC13.51□□□□□ -0.25
CiitaP79621 Zbtb20-205ENSMUST00000114695 2977 ntAPPRIS P3 TSL 1 (best) BASIC13.51□□□□□ -0.25
CiitaP79621 Cd34-202ENSMUST00000110815 2554 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
CiitaP79621 Gm43721-201ENSMUST00000199677 2313 ntBASIC13.51□□□□□ -0.25
CiitaP79621 Rnf224-201ENSMUST00000091318 2021 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CiitaP79621 Ptpn7-203ENSMUST00000187985 1990 ntAPPRIS P1 TSL 5 BASIC13.51□□□□□ -0.25
CiitaP79621 AC126262.1-201ENSMUST00000221802 1904 ntBASIC13.51□□□□□ -0.25
CiitaP79621 Lzts1-204ENSMUST00000185176 5019 ntAPPRIS P1 TSL 5 BASIC13.51□□□□□ -0.25
CiitaP79621 Dusp19-201ENSMUST00000028384 1632 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CiitaP79621 Dnpep-202ENSMUST00000113605 1571 ntAPPRIS P3 TSL 1 (best) BASIC13.51□□□□□ -0.25
CiitaP79621 Pex2-206ENSMUST00000195855 1587 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CiitaP79621 4930550L24Rik-201ENSMUST00000062542 1572 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CiitaP79621 AC113441.2-201ENSMUST00000221538 1468 ntBASIC13.51□□□□□ -0.25
CiitaP79621 Cd79a-201ENSMUST00000003469 1457 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CiitaP79621 Gm18626-201ENSMUST00000221512 1409 ntBASIC13.51□□□□□ -0.25
CiitaP79621 Sgf29-201ENSMUST00000032956 1312 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CiitaP79621 Gm24934-201ENSMUST00000103764 111 ntBASIC13.51□□□□□ -0.25
CiitaP79621 Zscan10-203ENSMUST00000117606 891 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
CiitaP79621 H2-M6-ps-201ENSMUST00000119193 1034 ntBASIC13.51□□□□□ -0.25
CiitaP79621 Gm12298-201ENSMUST00000126999 731 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
CiitaP79621 Ank3-234ENSMUST00000182993 1233 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
CiitaP79621 Gm2260-201ENSMUST00000184965 657 ntBASIC13.51□□□□□ -0.25
CiitaP79621 Ighv5-7-201ENSMUST00000192302 244 ntBASIC13.51□□□□□ -0.25
CiitaP79621 Gm32141-201ENSMUST00000220189 488 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
CiitaP79621 Rab13-201ENSMUST00000065418 1107 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CiitaP79621 Adm2-201ENSMUST00000066991 1043 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CiitaP79621 A530020G20Rik-202ENSMUST00000181070 3660 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
CiitaP79621 Usp53-202ENSMUST00000197314 3586 ntTSL 5 BASIC13.51□□□□□ -0.25
CiitaP79621 Chfr-201ENSMUST00000014812 3146 ntAPPRIS P3 TSL 1 (best) BASIC13.51□□□□□ -0.25
CiitaP79621 Abi1-201ENSMUST00000078977 3027 ntAPPRIS ALT1 TSL 5 BASIC13.51□□□□□ -0.25
CiitaP79621 Srl-201ENSMUST00000023161 5000 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
CiitaP79621 Ccdc22-201ENSMUST00000033483 2353 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CiitaP79621 Ankrd13c-201ENSMUST00000040787 3903 ntAPPRIS P1 TSL 5 BASIC13.51□□□□□ -0.25
CiitaP79621 Cops7b-202ENSMUST00000121534 5383 ntAPPRIS P1 TSL 5 BASIC13.51□□□□□ -0.25
CiitaP79621 Srsf10-205ENSMUST00000126641 3754 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
CiitaP79621 Capn5-202ENSMUST00000107112 2232 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CiitaP79621 Dnajc5-201ENSMUST00000072334 6578 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CiitaP79621 Rtn4rl1-201ENSMUST00000102514 3525 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CiitaP79621 Gm44942-201ENSMUST00000096093 2072 ntBASIC13.51□□□□□ -0.25
CiitaP79621 Prkca-201ENSMUST00000059595 8409 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CiitaP79621 Rtbdn-201ENSMUST00000067472 1908 ntAPPRIS P2 TSL 1 (best) BASIC13.51□□□□□ -0.25
CiitaP79621 Bptf-203ENSMUST00000106763 12036 ntAPPRIS ALT2 TSL 5 BASIC13.5□□□□□ -0.25
CiitaP79621 Zfp219-202ENSMUST00000166169 3017 ntAPPRIS P2 TSL 1 (best) BASIC13.5□□□□□ -0.25
Retrieved 100 of 76,532 protein–RNA pairs in 44 ms