Protein–RNA interactions for Protein: G3X8Y1

Trim55, MCG19772, mousemouse

Predictions only

Length 545 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim55G3X8Y1 C1qtnf2-201ENSMUST00000057679 1211 ntAPPRIS P2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Trim55G3X8Y1 Tmod4-201ENSMUST00000005769 1242 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Trim55G3X8Y1 Gm9789-201ENSMUST00000062524 397 ntAPPRIS P1 BASIC12.82□□□□□ -0.36
Trim55G3X8Y1 Gpbar1-201ENSMUST00000077985 1075 ntAPPRIS P1 BASIC12.82□□□□□ -0.36
Trim55G3X8Y1 Mir125a-201ENSMUST00000083545 68 ntBASIC12.82□□□□□ -0.36
Trim55G3X8Y1 Vwf-201ENSMUST00000100941 1807 ntTSL 5 BASIC12.82□□□□□ -0.36
Trim55G3X8Y1 Nfx1-203ENSMUST00000098143 4594 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Trim55G3X8Y1 Cxcl12-203ENSMUST00000112871 3132 ntAPPRIS P4 TSL 1 (best) BASIC12.82□□□□□ -0.36
Trim55G3X8Y1 Recql4-201ENSMUST00000036852 3922 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Trim55G3X8Y1 Ep400-202ENSMUST00000112433 3399 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Trim55G3X8Y1 Pou2f3-201ENSMUST00000034513 2610 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Trim55G3X8Y1 Fggy-202ENSMUST00000079223 1891 ntAPPRIS P1 TSL 5 BASIC12.82□□□□□ -0.36
Trim55G3X8Y1 Lama4-201ENSMUST00000019992 6046 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Trim55G3X8Y1 Ntrk3-205ENSMUST00000193002 2678 ntAPPRIS ALT2 TSL 5 BASIC12.82□□□□□ -0.36
Trim55G3X8Y1 Pex11g-201ENSMUST00000004686 2870 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Trim55G3X8Y1 Slc10a6-201ENSMUST00000031263 2124 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Trim55G3X8Y1 Armcx2-202ENSMUST00000113193 3666 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Trim55G3X8Y1 Adm-201ENSMUST00000033054 1390 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Trim55G3X8Y1 Sox9-201ENSMUST00000000579 4135 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Trim55G3X8Y1 Phactr1-213ENSMUST00000148891 5307 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Trim55G3X8Y1 Esr2-202ENSMUST00000101291 3362 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Trim55G3X8Y1 Zfp629-202ENSMUST00000084564 5829 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Trim55G3X8Y1 Cep89-201ENSMUST00000079414 2610 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Trim55G3X8Y1 Iqcm-203ENSMUST00000212704 2035 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Trim55G3X8Y1 Hsd3b6-201ENSMUST00000029463 1802 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Trim55G3X8Y1 Sbk2-205ENSMUST00000208109 1422 ntTSL 5 BASIC12.81□□□□□ -0.36
Trim55G3X8Y1 Exosc10-202ENSMUST00000076022 2682 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Trim55G3X8Y1 Gtf2i-219ENSMUST00000174155 4141 ntAPPRIS P4 TSL 2 BASIC12.81□□□□□ -0.36
Trim55G3X8Y1 Smim1-214ENSMUST00000182191 3535 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Trim55G3X8Y1 Gp2-202ENSMUST00000207887 1853 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Trim55G3X8Y1 Rims1-206ENSMUST00000115273 6107 ntAPPRIS ALT2 TSL 5 BASIC12.81□□□□□ -0.36
Trim55G3X8Y1 Prkcd-205ENSMUST00000112207 2139 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Trim55G3X8Y1 Gm13616-201ENSMUST00000120600 222 ntBASIC12.81□□□□□ -0.36
Trim55G3X8Y1 Gm14057-201ENSMUST00000120631 482 ntBASIC12.81□□□□□ -0.36
Trim55G3X8Y1 Gm45453-201ENSMUST00000211758 853 ntBASIC12.81□□□□□ -0.36
Trim55G3X8Y1 AC121788.1-202ENSMUST00000218801 871 ntTSL 5 BASIC12.81□□□□□ -0.36
Trim55G3X8Y1 AC158529.1-201ENSMUST00000223618 239 ntBASIC12.81□□□□□ -0.36
Trim55G3X8Y1 Hnrnpa1l2-ps2-201ENSMUST00000022493 963 ntBASIC12.81□□□□□ -0.36
Trim55G3X8Y1 Eef1akmt2-201ENSMUST00000033257 1107 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Trim55G3X8Y1 March3-201ENSMUST00000035278 860 ntAPPRIS P1 TSL 3 BASIC12.81□□□□□ -0.36
Trim55G3X8Y1 Rnaseh2a-201ENSMUST00000065049 1006 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Trim55G3X8Y1 Siglec1-203ENSMUST00000110227 5790 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Trim55G3X8Y1 Fsd1-201ENSMUST00000011733 1748 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Trim55G3X8Y1 Wapl-202ENSMUST00000090027 4185 ntAPPRIS ALT2 TSL 5 BASIC12.81□□□□□ -0.36
Trim55G3X8Y1 Sp140-201ENSMUST00000080204 2417 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Trim55G3X8Y1 Rad54b-202ENSMUST00000095145 2403 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Trim55G3X8Y1 4933434E20Rik-204ENSMUST00000159064 1344 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Trim55G3X8Y1 Gm21103-202ENSMUST00000170923 1761 ntAPPRIS P5 TSL 5 BASIC12.81□□□□□ -0.36
Trim55G3X8Y1 Gm26510-201ENSMUST00000180468 1796 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Trim55G3X8Y1 Plcd1-201ENSMUST00000010804 2657 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Trim55G3X8Y1 Lgr5-206ENSMUST00000172806 2652 ntTSL 5 BASIC12.81□□□□□ -0.36
Trim55G3X8Y1 Pif1-203ENSMUST00000134538 3395 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Trim55G3X8Y1 Mmp25-201ENSMUST00000024696 3373 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Trim55G3X8Y1 6030407O03Rik-201ENSMUST00000189514 2094 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Trim55G3X8Y1 Rad54l-202ENSMUST00000102705 2780 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Trim55G3X8Y1 Usp17le-201ENSMUST00000053464 1626 ntTSL 5 BASIC12.8□□□□□ -0.36
Trim55G3X8Y1 Sparc-201ENSMUST00000018737 2300 ntAPPRIS P3 TSL 1 (best) BASIC12.8□□□□□ -0.36
Trim55G3X8Y1 Dll4-201ENSMUST00000102517 3747 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Trim55G3X8Y1 Grin2b-202ENSMUST00000111905 7484 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
Trim55G3X8Y1 Nek4-207ENSMUST00000228328 4245 ntAPPRIS P2 BASIC12.8□□□□□ -0.36
Trim55G3X8Y1 AU019823-201ENSMUST00000131351 3316 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Trim55G3X8Y1 AU019823-205ENSMUST00000171462 3339 ntAPPRIS P1 TSL 3 BASIC12.8□□□□□ -0.36
Trim55G3X8Y1 4930425O10Rik-201ENSMUST00000197761 1418 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Trim55G3X8Y1 Btbd9-201ENSMUST00000079924 6657 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Trim55G3X8Y1 Tctn1-201ENSMUST00000111738 5717 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Trim55G3X8Y1 Gm3252-201ENSMUST00000165619 1949 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
Trim55G3X8Y1 Calm1-202ENSMUST00000110082 4115 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Trim55G3X8Y1 Zfp384-206ENSMUST00000112425 2691 ntTSL 5 BASIC12.8□□□□□ -0.36
Trim55G3X8Y1 Kif19a-201ENSMUST00000084368 3433 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Trim55G3X8Y1 Ripk3-202ENSMUST00000168716 1964 ntTSL 5 BASIC12.8□□□□□ -0.36
Trim55G3X8Y1 Abhd18-203ENSMUST00000159774 4455 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
Trim55G3X8Y1 Ddx55-201ENSMUST00000071057 2799 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Trim55G3X8Y1 Acvr1c-203ENSMUST00000112607 1266 ntTSL 5 BASIC12.8□□□□□ -0.36
Trim55G3X8Y1 Gm15770-201ENSMUST00000117498 584 ntBASIC12.8□□□□□ -0.36
Trim55G3X8Y1 Gm11745-201ENSMUST00000121669 448 ntBASIC12.8□□□□□ -0.36
Trim55G3X8Y1 Tctn3-202ENSMUST00000132452 1271 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Trim55G3X8Y1 Nup188-205ENSMUST00000138666 534 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Trim55G3X8Y1 Ntpcr-205ENSMUST00000143504 520 ntTSL 5 BASIC12.8□□□□□ -0.36
Trim55G3X8Y1 Gm10244-202ENSMUST00000156905 474 ntTSL 3 BASIC12.8□□□□□ -0.36
Trim55G3X8Y1 Runx2os2-201ENSMUST00000161664 818 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Trim55G3X8Y1 Wfdc2-201ENSMUST00000017867 849 ntAPPRIS P2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Trim55G3X8Y1 Rian-216ENSMUST00000183215 880 ntTSL 3 BASIC12.8□□□□□ -0.36
Trim55G3X8Y1 Gm5628-201ENSMUST00000222318 1049 ntBASIC12.8□□□□□ -0.36
Trim55G3X8Y1 AC159635.2-201ENSMUST00000223092 817 ntTSL 5 BASIC12.8□□□□□ -0.36
Trim55G3X8Y1 Erp27-201ENSMUST00000032343 1029 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Trim55G3X8Y1 Farp2-202ENSMUST00000122402 2816 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Trim55G3X8Y1 Thbs2-201ENSMUST00000170872 5922 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Trim55G3X8Y1 Grem1-201ENSMUST00000099575 4148 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Trim55G3X8Y1 CT009713.5-203ENSMUST00000224218 2079 ntBASIC12.8□□□□□ -0.36
Trim55G3X8Y1 Gps1-208ENSMUST00000208737 1843 ntAPPRIS ALT1 TSL 5 BASIC12.8□□□□□ -0.36
Trim55G3X8Y1 Gabpb1-206ENSMUST00000110425 4153 ntAPPRIS ALT1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Trim55G3X8Y1 Add2-204ENSMUST00000203366 3407 ntAPPRIS ALT2 TSL 5 BASIC12.8□□□□□ -0.36
Trim55G3X8Y1 Npas2-201ENSMUST00000056815 4236 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Trim55G3X8Y1 Gm42466-201ENSMUST00000202099 1301 ntBASIC12.8□□□□□ -0.36
Trim55G3X8Y1 Gm45667-201ENSMUST00000210380 1316 ntBASIC12.8□□□□□ -0.36
Trim55G3X8Y1 4933412A08Rik-201ENSMUST00000061046 1343 ntBASIC12.8□□□□□ -0.36
Trim55G3X8Y1 Foxs1-201ENSMUST00000099200 1311 ntAPPRIS P1 BASIC12.8□□□□□ -0.36
Trim55G3X8Y1 Rlbp1-202ENSMUST00000179243 2142 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Trim55G3X8Y1 Nuak2-201ENSMUST00000072177 2936 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Trim55G3X8Y1 Plekha2-204ENSMUST00000128715 3463 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Retrieved 100 of 76,532 protein–RNA pairs in 68.9 ms