Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 AC154532.1-201ENSMUST00000227860 965 ntBASIC14.74□□□□□ -0.05
Trim56Q80VI1 Prss34-201ENSMUST00000037453 1216 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Trim56Q80VI1 Txn2-201ENSMUST00000005487 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Trim56Q80VI1 Olfr1413-201ENSMUST00000074859 1082 ntAPPRIS P1 BASIC14.74□□□□□ -0.05
Trim56Q80VI1 Sgip1-201ENSMUST00000066824 4305 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
Trim56Q80VI1 Sun2-203ENSMUST00000100439 3768 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
Trim56Q80VI1 Lnx1-209ENSMUST00000153543 2208 ntTSL 5 BASIC14.74□□□□□ -0.05
Trim56Q80VI1 Fnbp4-201ENSMUST00000013759 4691 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Trim56Q80VI1 Trim50-202ENSMUST00000111180 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
Trim56Q80VI1 Kiss1r-201ENSMUST00000045529 3163 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Trim56Q80VI1 Adora1-201ENSMUST00000038191 3625 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Trim56Q80VI1 Flt4-201ENSMUST00000020617 6255 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Trim56Q80VI1 Trpc2-201ENSMUST00000124189 2874 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Trim56Q80VI1 Nsd3-203ENSMUST00000136107 3818 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
Trim56Q80VI1 Zscan10-202ENSMUST00000115509 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
Trim56Q80VI1 Ube2k-210ENSMUST00000202679 4682 ntTSL 5 BASIC14.74□□□□□ -0.05
Trim56Q80VI1 Yeats2-201ENSMUST00000090052 5997 ntAPPRIS P3 TSL 1 (best) BASIC14.73□□□□□ -0.05
Trim56Q80VI1 Lcor-201ENSMUST00000067795 4810 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Trim56Q80VI1 Ssh1-204ENSMUST00000159592 8436 ntAPPRIS P2 TSL 1 (best) BASIC14.73□□□□□ -0.05
Trim56Q80VI1 Islr-201ENSMUST00000041477 2223 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Trim56Q80VI1 Pcdha11-203ENSMUST00000192447 4583 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
Trim56Q80VI1 Nccrp1-201ENSMUST00000057974 1531 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Trim56Q80VI1 Trim9-209ENSMUST00000222316 3049 ntTSL 2 BASIC14.73□□□□□ -0.05
Trim56Q80VI1 Pdcd1-201ENSMUST00000027507 1930 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Trim56Q80VI1 Asb17os-201ENSMUST00000156292 496 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
Trim56Q80VI1 Gm26083-201ENSMUST00000157904 193 ntBASIC14.73□□□□□ -0.05
Trim56Q80VI1 Ip6k2-204ENSMUST00000192307 1191 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
Trim56Q80VI1 AA914427-201ENSMUST00000193194 1166 ntBASIC14.73□□□□□ -0.05
Trim56Q80VI1 Gm40437-201ENSMUST00000222338 767 ntTSL 5 BASIC14.73□□□□□ -0.05
Trim56Q80VI1 AC154222.2-201ENSMUST00000225848 607 ntBASIC14.73□□□□□ -0.05
Trim56Q80VI1 Ctrb1-201ENSMUST00000034435 878 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Trim56Q80VI1 1700007G11Rik-201ENSMUST00000080333 861 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Trim56Q80VI1 Gm13142-201ENSMUST00000117213 1453 ntBASIC14.73□□□□□ -0.05
Trim56Q80VI1 Tctn3-203ENSMUST00000135795 1686 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
Trim56Q80VI1 Hnrnpf-209ENSMUST00000180020 2280 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Trim56Q80VI1 Stau1-203ENSMUST00000109236 2860 ntAPPRIS P3 TSL 1 (best) BASIC14.73□□□□□ -0.05
Trim56Q80VI1 Gm15326-202ENSMUST00000128198 1422 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
Trim56Q80VI1 Gm20605-201ENSMUST00000177545 4464 ntAPPRIS P1 TSL 2 BASIC14.73□□□□□ -0.05
Trim56Q80VI1 Gm16564-201ENSMUST00000162545 3010 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
Trim56Q80VI1 Heg1-205ENSMUST00000152782 8161 ntAPPRIS ALT2 TSL 5 BASIC14.73□□□□□ -0.05
Trim56Q80VI1 Pbrm1-206ENSMUST00000112094 5154 ntAPPRIS P5 TSL 5 BASIC14.73□□□□□ -0.05
Trim56Q80VI1 Dmac2-202ENSMUST00000085953 2387 ntAPPRIS P3 TSL 1 (best) BASIC14.73□□□□□ -0.05
Trim56Q80VI1 Gm38355-201ENSMUST00000192514 1570 ntBASIC14.73□□□□□ -0.05
Trim56Q80VI1 Syngap1-201ENSMUST00000081285 4315 ntAPPRIS ALT2 TSL 5 BASIC14.73□□□□□ -0.05
Trim56Q80VI1 Chrd-201ENSMUST00000007171 3275 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Trim56Q80VI1 Pax7-202ENSMUST00000174681 1725 ntAPPRIS ALT1 TSL 5 BASIC14.72□□□□□ -0.05
Trim56Q80VI1 Mrps35-201ENSMUST00000036111 4162 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Trim56Q80VI1 Taf1c-201ENSMUST00000093099 3236 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Trim56Q80VI1 Grm2-201ENSMUST00000023959 4711 ntAPPRIS P1 TSL 5 BASIC14.72□□□□□ -0.05
Trim56Q80VI1 Epha8-201ENSMUST00000030420 4713 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Trim56Q80VI1 Nrd1-201ENSMUST00000065977 4311 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
Trim56Q80VI1 Kmt2e-202ENSMUST00000115128 7317 ntAPPRIS P1 TSL 5 BASIC14.72□□□□□ -0.05
Trim56Q80VI1 Gpr35-205ENSMUST00000186298 2647 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Trim56Q80VI1 H2-T10-202ENSMUST00000174382 1699 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
Trim56Q80VI1 Ank2-217ENSMUST00000182610 2231 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
Trim56Q80VI1 BC052040-203ENSMUST00000166472 2770 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
Trim56Q80VI1 Cyth1-201ENSMUST00000017276 3135 ntAPPRIS ALT1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Trim56Q80VI1 Gm2606-201ENSMUST00000100754 1002 ntBASIC14.72□□□□□ -0.05
Trim56Q80VI1 Gm12012-201ENSMUST00000118857 1066 ntBASIC14.72□□□□□ -0.05
Trim56Q80VI1 Gm12286-201ENSMUST00000119246 1002 ntBASIC14.72□□□□□ -0.05
Trim56Q80VI1 Retn-201ENSMUST00000012849 874 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Trim56Q80VI1 Gm44958-201ENSMUST00000203734 736 ntBASIC14.72□□□□□ -0.05
Trim56Q80VI1 Gm44992-206ENSMUST00000209313 1261 ntTSL 5 BASIC14.72□□□□□ -0.05
Trim56Q80VI1 9230110C19Rik-202ENSMUST00000215478 533 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
Trim56Q80VI1 Lsm7-201ENSMUST00000035775 468 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Trim56Q80VI1 Pphln1-203ENSMUST00000109256 3759 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Trim56Q80VI1 Zmym3-205ENSMUST00000119699 1750 ntTSL 5 BASIC14.72□□□□□ -0.05
Trim56Q80VI1 Gas7-201ENSMUST00000041611 2968 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
Trim56Q80VI1 Ephb6-201ENSMUST00000114732 3762 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Trim56Q80VI1 Gm32479-201ENSMUST00000204226 2739 ntTSL 2 BASIC14.72□□□□□ -0.05
Trim56Q80VI1 Sgk3-202ENSMUST00000166384 3706 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Trim56Q80VI1 Rftn2-202ENSMUST00000114428 2012 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
Trim56Q80VI1 Slc14a1-203ENSMUST00000160639 2047 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.05
Trim56Q80VI1 Mkrn1-201ENSMUST00000031985 3046 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.05
Trim56Q80VI1 Adra1a-206ENSMUST00000225182 2337 ntBASIC14.71□□□□□ -0.05
Trim56Q80VI1 Aaas-201ENSMUST00000041208 1816 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Trim56Q80VI1 Igf1-204ENSMUST00000121161 1344 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
Trim56Q80VI1 Gm4735-201ENSMUST00000138679 1302 ntBASIC14.71□□□□□ -0.05
Trim56Q80VI1 Gm5855-201ENSMUST00000200240 1305 ntBASIC14.71□□□□□ -0.05
Trim56Q80VI1 4732471J01Rik-204ENSMUST00000206436 2430 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
Trim56Q80VI1 Zfpm2-201ENSMUST00000053467 4974 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Trim56Q80VI1 Cpped1-201ENSMUST00000073371 1922 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
Trim56Q80VI1 Rfx1-204ENSMUST00000211046 3677 ntAPPRIS ALT2 TSL 5 BASIC14.71□□□□□ -0.05
Trim56Q80VI1 Tcf4-210ENSMUST00000128706 2066 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
Trim56Q80VI1 Skap1-202ENSMUST00000100519 1100 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
Trim56Q80VI1 Ifna7-201ENSMUST00000105143 573 ntAPPRIS P1 BASIC14.71□□□□□ -0.05
Trim56Q80VI1 Gm14109-201ENSMUST00000118814 309 ntBASIC14.71□□□□□ -0.05
Trim56Q80VI1 Gm12715-201ENSMUST00000121430 1128 ntBASIC14.71□□□□□ -0.05
Trim56Q80VI1 E130006D01Rik-203ENSMUST00000137398 906 ntTSL 2 BASIC14.71□□□□□ -0.05
Trim56Q80VI1 Gm17105-201ENSMUST00000163715 652 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
Trim56Q80VI1 Hsbp1l1-201ENSMUST00000166219 1251 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Trim56Q80VI1 Gm38319-201ENSMUST00000194537 1266 ntBASIC14.71□□□□□ -0.05
Trim56Q80VI1 Gm38317-201ENSMUST00000195564 343 ntBASIC14.71□□□□□ -0.05
Trim56Q80VI1 Gm42797-201ENSMUST00000197573 494 ntTSL 3 BASIC14.71□□□□□ -0.05
Trim56Q80VI1 Gm45881-201ENSMUST00000210659 517 ntTSL 5 BASIC14.71□□□□□ -0.05
Trim56Q80VI1 Gm39185-201ENSMUST00000212941 540 ntTSL 5 BASIC14.71□□□□□ -0.05
Trim56Q80VI1 Fam168a-210ENSMUST00000216021 968 ntAPPRIS P1 TSL 5 BASIC14.71□□□□□ -0.05
Trim56Q80VI1 1110017D15Rik-201ENSMUST00000030152 1114 ntAPPRIS P1 TSL 5 BASIC14.71□□□□□ -0.05
Trim56Q80VI1 Odf4-201ENSMUST00000038932 1078 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Trim56Q80VI1 Sall4-201ENSMUST00000029061 5073 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Retrieved 100 of 76,532 protein–RNA pairs in 136.4 ms