Protein–RNA interactions for Protein: Q6ZPL9

Ddx55, ATP-dependent RNA helicase DDX55, mousemouse

Known RBP Predictions only

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx55Q6ZPL9 Spock1-205ENSMUST00000187852 3113 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Ddx55Q6ZPL9 Scg3-201ENSMUST00000034699 2384 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ddx55Q6ZPL9 Lmntd2-201ENSMUST00000026573 2095 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ddx55Q6ZPL9 AC130671.2-201ENSMUST00000227224 1621 ntBASIC14.19□□□□□ -0.14
Ddx55Q6ZPL9 Kcnt1-211ENSMUST00000171268 3771 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ddx55Q6ZPL9 Adam11-202ENSMUST00000103081 4620 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ddx55Q6ZPL9 Wdr45-204ENSMUST00000115689 1568 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ddx55Q6ZPL9 B230206H07Rik-202ENSMUST00000134845 3269 ntTSL 5 BASIC14.19□□□□□ -0.14
Ddx55Q6ZPL9 Pla2g5-204ENSMUST00000102513 2289 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
Ddx55Q6ZPL9 Rbmx-202ENSMUST00000114726 2108 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ddx55Q6ZPL9 Gm14314-201ENSMUST00000118225 1015 ntBASIC14.19□□□□□ -0.14
Ddx55Q6ZPL9 Gm16397-201ENSMUST00000122201 494 ntBASIC14.19□□□□□ -0.14
Ddx55Q6ZPL9 Asb8-202ENSMUST00000123626 1100 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ddx55Q6ZPL9 Asb8-203ENSMUST00000123922 1162 ntAPPRIS P1 TSL 3 BASIC14.19□□□□□ -0.14
Ddx55Q6ZPL9 Gm13257-201ENSMUST00000132840 665 ntTSL 3 BASIC14.19□□□□□ -0.14
Ddx55Q6ZPL9 Erh-202ENSMUST00000166931 506 ntTSL 2 BASIC14.19□□□□□ -0.14
Ddx55Q6ZPL9 Gm28516-201ENSMUST00000190257 663 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Ddx55Q6ZPL9 Fgf5-202ENSMUST00000200059 600 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Ddx55Q6ZPL9 Hsph1-211ENSMUST00000202361 3802 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ddx55Q6ZPL9 Gm44710-201ENSMUST00000208885 471 ntTSL 2 BASIC14.19□□□□□ -0.14
Ddx55Q6ZPL9 Gm7395-201ENSMUST00000216059 1045 ntBASIC14.19□□□□□ -0.14
Ddx55Q6ZPL9 CT485607.1-201ENSMUST00000216100 85 ntBASIC14.19□□□□□ -0.14
Ddx55Q6ZPL9 4930578I06Rik-201ENSMUST00000022532 1033 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ddx55Q6ZPL9 Actg-ps1-201ENSMUST00000099636 1124 ntBASIC14.19□□□□□ -0.14
Ddx55Q6ZPL9 Opa1-206ENSMUST00000160597 6230 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ddx55Q6ZPL9 Ube3b-201ENSMUST00000074002 5194 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ddx55Q6ZPL9 Fgfr1-202ENSMUST00000117179 4046 ntAPPRIS ALT1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ddx55Q6ZPL9 Pak4-201ENSMUST00000032823 2611 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ddx55Q6ZPL9 Il1rn-204ENSMUST00000114487 2474 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Ddx55Q6ZPL9 Mboat2-201ENSMUST00000078902 2467 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
Ddx55Q6ZPL9 Fgfr3-210ENSMUST00000169212 4245 ntAPPRIS P4 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ddx55Q6ZPL9 Atp2a3-202ENSMUST00000108484 4467 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
Ddx55Q6ZPL9 Gins2-201ENSMUST00000034278 3900 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ddx55Q6ZPL9 Ksr1-207ENSMUST00000226282 5260 ntBASIC14.19□□□□□ -0.14
Ddx55Q6ZPL9 Treh-201ENSMUST00000034609 2048 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ddx55Q6ZPL9 Atg7-207ENSMUST00000182428 2264 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
Ddx55Q6ZPL9 Add2-208ENSMUST00000203786 2289 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ddx55Q6ZPL9 Zfp574-202ENSMUST00000179556 4140 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ddx55Q6ZPL9 Minos1-203ENSMUST00000143971 2549 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ddx55Q6ZPL9 Rbl2-208ENSMUST00000209518 4792 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ddx55Q6ZPL9 Renbp-209ENSMUST00000155597 1310 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
Ddx55Q6ZPL9 Nlrp6-204ENSMUST00000184560 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ddx55Q6ZPL9 Fbxo10-201ENSMUST00000052236 4635 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ddx55Q6ZPL9 Tbkbp1-205ENSMUST00000118375 3288 ntAPPRIS P2 TSL 5 BASIC14.18□□□□□ -0.14
Ddx55Q6ZPL9 Nkx6-3-201ENSMUST00000071588 2238 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ddx55Q6ZPL9 Fbxo34-203ENSMUST00000163324 3132 ntAPPRIS ALT2 TSL 2 BASIC14.18□□□□□ -0.14
Ddx55Q6ZPL9 Cacna2d2-208ENSMUST00000170737 5332 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ddx55Q6ZPL9 Tcf25-201ENSMUST00000057934 2738 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ddx55Q6ZPL9 Cadps2-209ENSMUST00000142913 4533 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
Ddx55Q6ZPL9 Usp16-201ENSMUST00000026710 3205 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ddx55Q6ZPL9 Eef1akmt2-202ENSMUST00000120425 573 ntTSL 3 BASIC14.18□□□□□ -0.14
Ddx55Q6ZPL9 Gm7722-201ENSMUST00000120646 741 ntBASIC14.18□□□□□ -0.14
Ddx55Q6ZPL9 Gm11211-201ENSMUST00000143618 359 ntTSL 3 BASIC14.18□□□□□ -0.14
Ddx55Q6ZPL9 4930538E20Rik-202ENSMUST00000146717 497 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Ddx55Q6ZPL9 Gm11683-201ENSMUST00000147006 918 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Ddx55Q6ZPL9 1700121N20Rik-201ENSMUST00000167922 1027 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Ddx55Q6ZPL9 Insig2-214ENSMUST00000186915 674 ntTSL 3 BASIC14.18□□□□□ -0.14
Ddx55Q6ZPL9 Gm38210-201ENSMUST00000191944 809 ntBASIC14.18□□□□□ -0.14
Ddx55Q6ZPL9 Ccdc12-201ENSMUST00000019803 834 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ddx55Q6ZPL9 AC151275.1-201ENSMUST00000224870 585 ntBASIC14.18□□□□□ -0.14
Ddx55Q6ZPL9 Sat1-201ENSMUST00000026318 1162 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ddx55Q6ZPL9 Gm9785-201ENSMUST00000062642 1006 ntBASIC14.18□□□□□ -0.14
Ddx55Q6ZPL9 Sstr2-201ENSMUST00000067591 1041 ntTSL 2 BASIC14.18□□□□□ -0.14
Ddx55Q6ZPL9 Cldn17-201ENSMUST00000069549 1172 ntAPPRIS P1 BASIC14.18□□□□□ -0.14
Ddx55Q6ZPL9 Scoc-202ENSMUST00000167525 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ddx55Q6ZPL9 Cflar-202ENSMUST00000097722 1771 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
Ddx55Q6ZPL9 Egr3-204ENSMUST00000225200 3940 ntAPPRIS P2 BASIC14.18□□□□□ -0.14
Ddx55Q6ZPL9 Tnks1bp1-201ENSMUST00000048400 4799 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ddx55Q6ZPL9 Camta2-203ENSMUST00000108544 4632 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ddx55Q6ZPL9 Aldh3b2-201ENSMUST00000143380 2141 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ddx55Q6ZPL9 Mtch2-211ENSMUST00000150232 2377 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Ddx55Q6ZPL9 Lypd6-201ENSMUST00000053208 3620 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ddx55Q6ZPL9 Pdcd6ip-202ENSMUST00000111861 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ddx55Q6ZPL9 Cct4-204ENSMUST00000173867 2484 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ddx55Q6ZPL9 4731419I09Rik-201ENSMUST00000180791 2820 ntTSL 2 BASIC14.18□□□□□ -0.14
Ddx55Q6ZPL9 Knop1-204ENSMUST00000106550 5524 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ddx55Q6ZPL9 Cobl-208ENSMUST00000172919 2566 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Ddx55Q6ZPL9 Slc39a3-201ENSMUST00000059551 3680 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ddx55Q6ZPL9 Phactr3-204ENSMUST00000108916 2656 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Ddx55Q6ZPL9 Psap-204ENSMUST00000177779 2657 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
Ddx55Q6ZPL9 Psap-205ENSMUST00000179238 2657 ntAPPRIS P3 TSL 5 BASIC14.18□□□□□ -0.14
Ddx55Q6ZPL9 Psap-201ENSMUST00000004316 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ddx55Q6ZPL9 Dcaf6-201ENSMUST00000027856 4110 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Ddx55Q6ZPL9 1600014C10Rik-205ENSMUST00000178876 3283 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Ddx55Q6ZPL9 Def8-203ENSMUST00000093049 1909 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Ddx55Q6ZPL9 Bscl2-203ENSMUST00000159634 1684 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Ddx55Q6ZPL9 Ntm-203ENSMUST00000115237 2039 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Ddx55Q6ZPL9 Plod2-203ENSMUST00000160359 3663 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Ddx55Q6ZPL9 Rgs20-202ENSMUST00000118000 2125 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
Ddx55Q6ZPL9 Tulp2-202ENSMUST00000085331 1525 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Ddx55Q6ZPL9 Kbtbd7-201ENSMUST00000061222 4526 ntAPPRIS P1 BASIC14.17□□□□□ -0.14
Ddx55Q6ZPL9 Cela3b-201ENSMUST00000102522 926 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Ddx55Q6ZPL9 Timm22-202ENSMUST00000120699 746 ntTSL 3 BASIC14.17□□□□□ -0.14
Ddx55Q6ZPL9 Gm7666-201ENSMUST00000146631 819 ntBASIC14.17□□□□□ -0.14
Ddx55Q6ZPL9 B230119M05Rik-201ENSMUST00000154072 979 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Ddx55Q6ZPL9 Gm7535-201ENSMUST00000164167 909 ntAPPRIS P1 BASIC14.17□□□□□ -0.14
Ddx55Q6ZPL9 Retn-202ENSMUST00000169234 1139 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
Ddx55Q6ZPL9 Spaca6-209ENSMUST00000172097 1073 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
Ddx55Q6ZPL9 Gm27175-201ENSMUST00000183759 606 ntTSL 3 BASIC14.17□□□□□ -0.14
Ddx55Q6ZPL9 Gm27223-201ENSMUST00000184653 606 ntTSL 3 BASIC14.17□□□□□ -0.14
Retrieved 100 of 76,532 protein–RNA pairs in 28.9 ms