Protein–RNA interactions for Protein: Q6PDQ2

Chd4, Chromodomain-helicase-DNA-binding protein 4, mousemouse

Known RBP Predictions only

Length 1,915 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd4Q6PDQ2 Ikzf5-202ENSMUST00000121033 2231 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Chd4Q6PDQ2 3200001D21Rik-201ENSMUST00000221603 2283 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Chd4Q6PDQ2 Specc1-209ENSMUST00000201671 2523 ntTSL 5 BASIC16.05■□□□□ 0.16
Chd4Q6PDQ2 Ivns1abp-201ENSMUST00000023918 3511 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Chd4Q6PDQ2 Arap1-204ENSMUST00000107010 5147 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
Chd4Q6PDQ2 Rhot1-204ENSMUST00000092857 3687 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
Chd4Q6PDQ2 Mcm8-201ENSMUST00000028831 3179 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
Chd4Q6PDQ2 Cacna2d2-202ENSMUST00000085092 5183 ntAPPRIS P4 TSL 5 BASIC16.04■□□□□ 0.16
Chd4Q6PDQ2 Gm43447-201ENSMUST00000198471 1535 ntBASIC16.04■□□□□ 0.16
Chd4Q6PDQ2 AA672651-201ENSMUST00000151550 489 ntTSL 2 BASIC16.04■□□□□ 0.16
Chd4Q6PDQ2 Ccdc12-201ENSMUST00000019803 834 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Chd4Q6PDQ2 4933408A14Rik-201ENSMUST00000199037 729 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Chd4Q6PDQ2 Gm43050-202ENSMUST00000201152 651 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Chd4Q6PDQ2 Gm33201-201ENSMUST00000204791 855 ntTSL 3 BASIC16.04■□□□□ 0.16
Chd4Q6PDQ2 Gm10318-202ENSMUST00000217996 639 ntTSL 5 BASIC16.04■□□□□ 0.16
Chd4Q6PDQ2 Sat1-201ENSMUST00000026318 1162 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Chd4Q6PDQ2 Pf4-201ENSMUST00000031320 588 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Chd4Q6PDQ2 Calu-202ENSMUST00000090481 2670 ntAPPRIS ALT1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Chd4Q6PDQ2 Fus-203ENSMUST00000106251 5536 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
Chd4Q6PDQ2 Sufu-204ENSMUST00000120778 1850 ntTSL 2 BASIC16.04■□□□□ 0.16
Chd4Q6PDQ2 C130050O18Rik-202ENSMUST00000163940 1618 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Chd4Q6PDQ2 Gm10681-202ENSMUST00000178221 1605 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
Chd4Q6PDQ2 Dennd4b-202ENSMUST00000129564 5647 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
Chd4Q6PDQ2 Gpr132-201ENSMUST00000021729 2478 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Chd4Q6PDQ2 Pnma3-201ENSMUST00000060418 3405 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
Chd4Q6PDQ2 Acat2-201ENSMUST00000007005 2250 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Chd4Q6PDQ2 Mta2-201ENSMUST00000096240 3135 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Chd4Q6PDQ2 Gstm4-202ENSMUST00000106670 777 ntTSL 3 BASIC16.04■□□□□ 0.16
Chd4Q6PDQ2 Smim5-202ENSMUST00000142089 685 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Chd4Q6PDQ2 Gm44805-202ENSMUST00000150569 587 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
Chd4Q6PDQ2 Crhr2-204ENSMUST00000164012 1263 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Chd4Q6PDQ2 Gm18367-201ENSMUST00000176139 600 ntBASIC16.04■□□□□ 0.16
Chd4Q6PDQ2 Camk2d-226ENSMUST00000199300 5524 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Chd4Q6PDQ2 4930430O22Rik-202ENSMUST00000202548 579 ntBASIC16.04■□□□□ 0.16
Chd4Q6PDQ2 Gm6145-204ENSMUST00000210902 1266 ntTSL 5 BASIC16.04■□□□□ 0.16
Chd4Q6PDQ2 Gm2553-201ENSMUST00000215986 605 ntBASIC16.04■□□□□ 0.16
Chd4Q6PDQ2 Oasl1-201ENSMUST00000031540 2125 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Chd4Q6PDQ2 Sdr9c7-201ENSMUST00000047134 2868 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Chd4Q6PDQ2 Slc14a1-203ENSMUST00000160639 2047 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
Chd4Q6PDQ2 Lrp6-201ENSMUST00000032322 9368 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Chd4Q6PDQ2 She-201ENSMUST00000050401 5733 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Chd4Q6PDQ2 Pdxdc1-204ENSMUST00000115804 2880 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
Chd4Q6PDQ2 Klhl29-201ENSMUST00000020958 7041 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Chd4Q6PDQ2 Map1b-203ENSMUST00000223725 2669 ntBASIC16.03■□□□□ 0.16
Chd4Q6PDQ2 Gm6189-201ENSMUST00000164487 2082 ntBASIC16.03■□□□□ 0.16
Chd4Q6PDQ2 Hrct1-201ENSMUST00000095109 1452 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
Chd4Q6PDQ2 Cdkl2-204ENSMUST00000113143 2513 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
Chd4Q6PDQ2 Sh3bp5l-202ENSMUST00000116376 3016 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Chd4Q6PDQ2 Ccpg1-206ENSMUST00000140675 2839 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
Chd4Q6PDQ2 Gm15566-201ENSMUST00000121130 590 ntBASIC16.03■□□□□ 0.16
Chd4Q6PDQ2 Pcbd2-202ENSMUST00000124968 546 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Chd4Q6PDQ2 Gm13133-201ENSMUST00000143888 736 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Chd4Q6PDQ2 Cldn16-202ENSMUST00000161053 1173 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Chd4Q6PDQ2 Gm5778-201ENSMUST00000171003 1072 ntBASIC16.03■□□□□ 0.16
Chd4Q6PDQ2 Ager-207ENSMUST00000173992 1248 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Chd4Q6PDQ2 Gm26759-201ENSMUST00000181773 1251 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Chd4Q6PDQ2 Phxr2-201ENSMUST00000060761 1159 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
Chd4Q6PDQ2 Lst1-201ENSMUST00000097336 415 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Chd4Q6PDQ2 Pigk-201ENSMUST00000045029 1761 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Chd4Q6PDQ2 Tmc8-204ENSMUST00000119455 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
Chd4Q6PDQ2 Gm26531-201ENSMUST00000181727 1967 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Chd4Q6PDQ2 Zfp433-202ENSMUST00000200889 2384 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Chd4Q6PDQ2 Gm32687-201ENSMUST00000220314 2379 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Chd4Q6PDQ2 Inpp5a-202ENSMUST00000097975 2301 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Chd4Q6PDQ2 Chtop-205ENSMUST00000107343 3118 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
Chd4Q6PDQ2 Ccnj-201ENSMUST00000025983 3819 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Chd4Q6PDQ2 Arhgap1-204ENSMUST00000111331 2883 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
Chd4Q6PDQ2 Ankrd61-201ENSMUST00000079624 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
Chd4Q6PDQ2 Myo3b-202ENSMUST00000112241 1319 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
Chd4Q6PDQ2 Dubr-204ENSMUST00000186944 2052 ntTSL 2 BASIC16.02■□□□□ 0.16
Chd4Q6PDQ2 Atxn7-201ENSMUST00000022257 6853 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.16
Chd4Q6PDQ2 Rpl35a-204ENSMUST00000115078 500 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Chd4Q6PDQ2 Gm11663-201ENSMUST00000117888 290 ntBASIC16.02■□□□□ 0.16
Chd4Q6PDQ2 Gm14665-201ENSMUST00000122294 557 ntBASIC16.02■□□□□ 0.16
Chd4Q6PDQ2 n-R5s84-201ENSMUST00000122591 109 ntBASIC16.02■□□□□ 0.16
Chd4Q6PDQ2 Gm44793-201ENSMUST00000136923 582 ntTSL 2 BASIC16.02■□□□□ 0.16
Chd4Q6PDQ2 2610005L07Rik-201ENSMUST00000139264 948 ntBASIC16.02■□□□□ 0.16
Chd4Q6PDQ2 H1foo-203ENSMUST00000161969 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
Chd4Q6PDQ2 Gm10320-201ENSMUST00000170205 527 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.16
Chd4Q6PDQ2 Gm21092-201ENSMUST00000178995 955 ntBASIC16.02■□□□□ 0.16
Chd4Q6PDQ2 Gm5714-201ENSMUST00000197343 566 ntBASIC16.02■□□□□ 0.16
Chd4Q6PDQ2 9430078K24Rik-201ENSMUST00000218818 1082 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
Chd4Q6PDQ2 CT009713.8-202ENSMUST00000224732 385 ntBASIC16.02■□□□□ 0.16
Chd4Q6PDQ2 Dpysl4-202ENSMUST00000121184 2727 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
Chd4Q6PDQ2 Senp3-201ENSMUST00000005336 2313 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Chd4Q6PDQ2 Gm7002-201ENSMUST00000221386 2165 ntBASIC16.02■□□□□ 0.16
Chd4Q6PDQ2 Ncf4-201ENSMUST00000096357 1464 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
Chd4Q6PDQ2 Palm-204ENSMUST00000218631 2725 ntTSL 2 BASIC16.02■□□□□ 0.15
Chd4Q6PDQ2 Caprin2-202ENSMUST00000111569 3697 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.15
Chd4Q6PDQ2 Slc14a2-202ENSMUST00000163367 1428 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
Chd4Q6PDQ2 Ralgps2-209ENSMUST00000189316 2924 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
Chd4Q6PDQ2 Lrrc7-201ENSMUST00000106044 5918 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.15
Chd4Q6PDQ2 Hspa2-202ENSMUST00000219555 2526 ntAPPRIS P1 BASIC16.02■□□□□ 0.15
Chd4Q6PDQ2 Gm14340-201ENSMUST00000148700 1913 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
Chd4Q6PDQ2 Pdk1-201ENSMUST00000006669 5185 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
Chd4Q6PDQ2 Gm8155-201ENSMUST00000216363 1612 ntBASIC16.02■□□□□ 0.15
Chd4Q6PDQ2 Gm15513-201ENSMUST00000140646 1569 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
Chd4Q6PDQ2 Tsc22d4-204ENSMUST00000110983 1043 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
Chd4Q6PDQ2 Apoe-210ENSMUST00000174710 514 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
Chd4Q6PDQ2 Fxyd4-203ENSMUST00000203082 815 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
Retrieved 100 of 76,532 protein–RNA pairs in 28.2 ms