Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Rpl28-ps3-201ENSMUST00000116058 393 ntBASIC16.13■□□□□ 0.17
Trim28Q62318 Odf4-202ENSMUST00000125134 646 ntTSL 3 BASIC16.13■□□□□ 0.17
Trim28Q62318 Gm8343-201ENSMUST00000182705 994 ntBASIC16.13■□□□□ 0.17
Trim28Q62318 Gm34728-201ENSMUST00000201510 414 ntTSL 3 BASIC16.13■□□□□ 0.17
Trim28Q62318 Gm44136-201ENSMUST00000203819 1106 ntBASIC16.13■□□□□ 0.17
Trim28Q62318 Krtap19-1-201ENSMUST00000081334 493 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
Trim28Q62318 Mir219a-1-201ENSMUST00000083621 110 ntBASIC16.13■□□□□ 0.17
Trim28Q62318 Lgals1-201ENSMUST00000089377 800 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trim28Q62318 Cd8b1-201ENSMUST00000065248 1483 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trim28Q62318 Armc6-201ENSMUST00000019679 2263 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trim28Q62318 Proser3-202ENSMUST00000108165 2466 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trim28Q62318 Proser3-206ENSMUST00000215288 2465 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
Trim28Q62318 Dpysl3-204ENSMUST00000121805 5484 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Trim28Q62318 Prrt3-201ENSMUST00000101059 3304 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trim28Q62318 Ctnnb1-214ENSMUST00000178812 2702 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trim28Q62318 4933440M02Rik-203ENSMUST00000206609 1747 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Trim28Q62318 Adh4-201ENSMUST00000013458 1314 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trim28Q62318 Spg20-202ENSMUST00000107971 3567 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trim28Q62318 Zfp777-201ENSMUST00000095944 3184 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trim28Q62318 Myh14-204ENSMUST00000207775 6499 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
Trim28Q62318 Ocln-201ENSMUST00000022140 2839 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trim28Q62318 Islr-201ENSMUST00000041477 2223 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trim28Q62318 Cenpo-201ENSMUST00000020981 2037 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trim28Q62318 C130026L21Rik-201ENSMUST00000064930 2472 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Trim28Q62318 Hmx2-201ENSMUST00000051997 3102 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trim28Q62318 Rbpsuh-rs3-201ENSMUST00000182751 1441 ntBASIC16.12■□□□□ 0.17
Trim28Q62318 Gm43154-214ENSMUST00000211225 1420 ntTSL 5 BASIC16.12■□□□□ 0.17
Trim28Q62318 Lmx1b-201ENSMUST00000041730 4790 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trim28Q62318 Zc3h13-203ENSMUST00000227049 6144 ntAPPRIS ALT2 BASIC16.12■□□□□ 0.17
Trim28Q62318 Ccnk-201ENSMUST00000101055 2627 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
Trim28Q62318 Ppp4r3b-202ENSMUST00000102856 2410 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Trim28Q62318 Gm23596-201ENSMUST00000104304 132 ntBASIC16.12■□□□□ 0.17
Trim28Q62318 Gm14190-201ENSMUST00000105073 153 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
Trim28Q62318 Mcfd2-205ENSMUST00000145895 751 ntTSL 2 BASIC16.12■□□□□ 0.17
Trim28Q62318 Gm44124-201ENSMUST00000204159 472 ntBASIC16.12■□□□□ 0.17
Trim28Q62318 Psma7-201ENSMUST00000029082 914 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trim28Q62318 Dolpp1-202ENSMUST00000113612 1958 ntTSL 3 BASIC16.12■□□□□ 0.17
Trim28Q62318 B430119L08Rik-201ENSMUST00000130054 1994 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Trim28Q62318 Lrrc18-204ENSMUST00000120951 1511 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
Trim28Q62318 Klhl26-205ENSMUST00000210250 2974 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Trim28Q62318 Abi1-201ENSMUST00000078977 3027 ntAPPRIS ALT1 TSL 5 BASIC16.12■□□□□ 0.17
Trim28Q62318 Ntsr1-202ENSMUST00000170448 2594 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trim28Q62318 Mrc2-202ENSMUST00000100335 5795 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trim28Q62318 Tspyl3-201ENSMUST00000099194 3072 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
Trim28Q62318 Zbtb4-202ENSMUST00000108639 7811 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trim28Q62318 Gm28047-201ENSMUST00000184772 1611 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
Trim28Q62318 Hsph1-205ENSMUST00000201452 3140 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trim28Q62318 Ace-202ENSMUST00000001964 2418 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Trim28Q62318 Kcnf1-201ENSMUST00000170580 4789 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
Trim28Q62318 A430108G06Rik-201ENSMUST00000153461 1428 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Trim28Q62318 Socs5-201ENSMUST00000041369 4392 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trim28Q62318 Vars-201ENSMUST00000087315 4137 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trim28Q62318 Plk2-201ENSMUST00000022212 2800 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trim28Q62318 Lancl1-202ENSMUST00000113979 4461 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trim28Q62318 Jph2-201ENSMUST00000017961 4211 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trim28Q62318 Gsn-205ENSMUST00000201185 2607 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trim28Q62318 Mapk4-201ENSMUST00000091851 4594 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trim28Q62318 Timm10b-204ENSMUST00000106784 494 ntTSL 3 BASIC16.11■□□□□ 0.17
Trim28Q62318 Gm5419-201ENSMUST00000119301 527 ntBASIC16.11■□□□□ 0.17
Trim28Q62318 Got2-ps1-201ENSMUST00000121655 1293 ntBASIC16.11■□□□□ 0.17
Trim28Q62318 Gm11985-201ENSMUST00000122910 1007 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
Trim28Q62318 Gm14396-201ENSMUST00000126966 548 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Trim28Q62318 1700001G11Rik-203ENSMUST00000153646 764 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Trim28Q62318 Cd63-ps-202ENSMUST00000154992 717 ntBASIC16.11■□□□□ 0.17
Trim28Q62318 Smpd4-223ENSMUST00000172182 516 ntTSL 3 BASIC16.11■□□□□ 0.17
Trim28Q62318 Gm20426-201ENSMUST00000173657 440 ntBASIC16.11■□□□□ 0.17
Trim28Q62318 Gm4034-201ENSMUST00000187674 480 ntBASIC16.11■□□□□ 0.17
Trim28Q62318 Gm18893-201ENSMUST00000198416 943 ntBASIC16.11■□□□□ 0.17
Trim28Q62318 Gm3786-201ENSMUST00000202659 378 ntBASIC16.11■□□□□ 0.17
Trim28Q62318 Tnfrsf19-203ENSMUST00000224371 1239 ntAPPRIS ALT2 BASIC16.11■□□□□ 0.17
Trim28Q62318 Lce3d-201ENSMUST00000059053 491 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trim28Q62318 Slc4a5-202ENSMUST00000113899 5039 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
Trim28Q62318 Snx14-207ENSMUST00000174806 3082 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
Trim28Q62318 Olfr139-204ENSMUST00000214111 1311 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
Trim28Q62318 Erp29-203ENSMUST00000130451 5204 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trim28Q62318 Pex2-204ENSMUST00000165309 2038 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
Trim28Q62318 Kars-201ENSMUST00000034426 2008 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trim28Q62318 Accs-201ENSMUST00000041593 2036 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trim28Q62318 A630014C17Rik-201ENSMUST00000150973 2984 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Trim28Q62318 6030466F02Rik-201ENSMUST00000212339 1434 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Trim28Q62318 Cpeb3-201ENSMUST00000079754 5899 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trim28Q62318 Zmat1-202ENSMUST00000113185 3378 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
Trim28Q62318 Cyp2u1-201ENSMUST00000106337 4378 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trim28Q62318 Prc1-211ENSMUST00000174199 2128 ntTSL 5 BASIC16.1■□□□□ 0.17
Trim28Q62318 Chfr-201ENSMUST00000014812 3146 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trim28Q62318 Dgcr14-201ENSMUST00000003621 2819 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trim28Q62318 Lyar-202ENSMUST00000114106 1504 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
Trim28Q62318 Rbm39-217ENSMUST00000146297 2580 ntAPPRIS ALT1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trim28Q62318 Nub1-201ENSMUST00000068825 3269 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trim28Q62318 BC030500-201ENSMUST00000062978 1605 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trim28Q62318 Lyzl6-202ENSMUST00000107014 802 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trim28Q62318 Gm6506-201ENSMUST00000119775 1136 ntBASIC16.1■□□□□ 0.17
Trim28Q62318 Ankrd29-202ENSMUST00000122408 850 ntTSL 5 BASIC16.1■□□□□ 0.17
Trim28Q62318 Pabpc1l2a-ps-201ENSMUST00000128361 513 ntBASIC16.1■□□□□ 0.17
Trim28Q62318 Gm23699-201ENSMUST00000158835 135 ntBASIC16.1■□□□□ 0.17
Trim28Q62318 Zfp229-206ENSMUST00000183192 653 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Trim28Q62318 Mir7677-201ENSMUST00000184226 67 ntBASIC16.1■□□□□ 0.17
Trim28Q62318 Gm29539-201ENSMUST00000188031 758 ntTSL 3 BASIC16.1■□□□□ 0.17
Trim28Q62318 Gm3332-201ENSMUST00000189337 928 ntBASIC16.1■□□□□ 0.17
Trim28Q62318 Gm29264-201ENSMUST00000191240 1264 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Retrieved 100 of 76,532 protein–RNA pairs in 33.5 ms