Protein–RNA interactions for Protein: Q61321

Six4, Homeobox protein SIX4, mousemouse

Predictions only

Length 775 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Six4Q61321 Smg7-203ENSMUST00000111836 3928 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
Six4Q61321 Rps3-202ENSMUST00000107096 952 ntTSL 3 BASIC12.62□□□□□ -0.39
Six4Q61321 Gm13563-201ENSMUST00000125518 643 ntTSL 3 BASIC12.62□□□□□ -0.39
Six4Q61321 Gm833-201ENSMUST00000143133 884 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Six4Q61321 Gm17028-201ENSMUST00000170026 704 ntTSL 3 BASIC12.62□□□□□ -0.39
Six4Q61321 Gm27023-201ENSMUST00000182372 285 ntBASIC12.62□□□□□ -0.39
Six4Q61321 2010320M18Rik-201ENSMUST00000191396 1009 ntBASIC12.62□□□□□ -0.39
Six4Q61321 AC147241.1-201ENSMUST00000222173 785 ntTSL 3 BASIC12.62□□□□□ -0.39
Six4Q61321 Tas2r137-201ENSMUST00000064932 1073 ntAPPRIS P1 BASIC12.62□□□□□ -0.39
Six4Q61321 Gm6169-201ENSMUST00000071118 1030 ntAPPRIS P1 BASIC12.62□□□□□ -0.39
Six4Q61321 Mkrn1-201ENSMUST00000031985 3046 ntAPPRIS P3 TSL 1 (best) BASIC12.62□□□□□ -0.39
Six4Q61321 Larp4b-202ENSMUST00000188211 5610 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Six4Q61321 Megf6-201ENSMUST00000030897 6851 ntAPPRIS P1 TSL 5 BASIC12.62□□□□□ -0.39
Six4Q61321 Tmem268-201ENSMUST00000077709 3765 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Six4Q61321 Slc29a1-204ENSMUST00000163492 2216 ntAPPRIS P3 TSL 1 (best) BASIC12.62□□□□□ -0.39
Six4Q61321 Scyl2-201ENSMUST00000092227 3566 ntAPPRIS ALT1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Six4Q61321 Gm43463-201ENSMUST00000195967 1803 ntBASIC12.62□□□□□ -0.39
Six4Q61321 A230072I06Rik-201ENSMUST00000098935 1839 ntAPPRIS P1 BASIC12.62□□□□□ -0.39
Six4Q61321 Oxct1-205ENSMUST00000138927 1743 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Six4Q61321 Pgm3-201ENSMUST00000070064 2666 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Six4Q61321 Acin1-208ENSMUST00000126166 2369 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Six4Q61321 Erich5-201ENSMUST00000060894 2383 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Six4Q61321 Fpr1-201ENSMUST00000061516 1324 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Six4Q61321 Celf1-214ENSMUST00000177642 7806 ntAPPRIS ALT1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Six4Q61321 C130012C08Rik-201ENSMUST00000194287 3665 ntBASIC12.61□□□□□ -0.39
Six4Q61321 Rubcn-203ENSMUST00000115105 5255 ntAPPRIS ALT2 TSL 5 BASIC12.61□□□□□ -0.39
Six4Q61321 Riok1-201ENSMUST00000021866 2738 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Six4Q61321 Tbx3-203ENSMUST00000121021 4777 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Six4Q61321 Mtdh-201ENSMUST00000022865 6919 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Six4Q61321 4933427G23Rik-201ENSMUST00000122963 2515 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Six4Q61321 Adam22-203ENSMUST00000088744 9245 ntAPPRIS ALT2 TSL 5 BASIC12.61□□□□□ -0.39
Six4Q61321 Trim50-202ENSMUST00000111180 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Six4Q61321 Ptn-202ENSMUST00000201321 2558 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Six4Q61321 Cyth1-201ENSMUST00000017276 3135 ntAPPRIS ALT1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Six4Q61321 Gm17089-201ENSMUST00000171098 1394 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Six4Q61321 Chrnd-201ENSMUST00000073252 2925 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Six4Q61321 Fthl17d-201ENSMUST00000105004 856 ntAPPRIS P1 BASIC12.61□□□□□ -0.39
Six4Q61321 Sgsm1-203ENSMUST00000112324 1102 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Six4Q61321 Rhox2c-201ENSMUST00000115190 762 ntAPPRIS P1 TSL 5 BASIC12.61□□□□□ -0.39
Six4Q61321 Gm24845-201ENSMUST00000158034 109 ntBASIC12.61□□□□□ -0.39
Six4Q61321 Gm28913-201ENSMUST00000186240 364 ntTSL 3 BASIC12.61□□□□□ -0.39
Six4Q61321 2900093K20Rik-201ENSMUST00000190930 567 ntBASIC12.61□□□□□ -0.39
Six4Q61321 Gm44124-201ENSMUST00000204159 472 ntBASIC12.61□□□□□ -0.39
Six4Q61321 Gm30285-201ENSMUST00000214614 422 ntBASIC12.61□□□□□ -0.39
Six4Q61321 AC113031.8-201ENSMUST00000227856 631 ntBASIC12.61□□□□□ -0.39
Six4Q61321 Cym-201ENSMUST00000029504 1236 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Six4Q61321 Tsc22d4-201ENSMUST00000031738 1043 ntTSL 3 BASIC12.61□□□□□ -0.39
Six4Q61321 Ccs-201ENSMUST00000037246 1057 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Six4Q61321 Rpl10-201ENSMUST00000008826 799 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Six4Q61321 Coq7-202ENSMUST00000098090 1215 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Six4Q61321 Armcx1-202ENSMUST00000051256 2253 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Six4Q61321 Sgk3-201ENSMUST00000097826 2728 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Six4Q61321 Epha5-204ENSMUST00000113401 5158 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Six4Q61321 Adgrl1-204ENSMUST00000131717 5152 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Six4Q61321 Ebp-201ENSMUST00000033509 1743 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Six4Q61321 Tcf4-205ENSMUST00000114980 2192 ntAPPRIS P1 TSL 5 BASIC12.61□□□□□ -0.39
Six4Q61321 Serpinb12-202ENSMUST00000112724 1623 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Six4Q61321 Strada-201ENSMUST00000007444 2099 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Six4Q61321 Arhgef2-201ENSMUST00000029694 4300 ntAPPRIS P3 TSL 1 (best) BASIC12.61□□□□□ -0.39
Six4Q61321 Brsk1-202ENSMUST00000120836 2867 ntTSL 5 BASIC12.61□□□□□ -0.39
Six4Q61321 Bcl2-201ENSMUST00000112751 7191 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Six4Q61321 Lcor-201ENSMUST00000067795 4810 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Six4Q61321 4933431M02Rik-201ENSMUST00000203905 1432 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Six4Q61321 Ank2-217ENSMUST00000182610 2231 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Six4Q61321 Esrrb-203ENSMUST00000110204 4196 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Six4Q61321 Pik3r1-201ENSMUST00000035532 2923 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Six4Q61321 Bysl-201ENSMUST00000024783 3854 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Six4Q61321 Cd163l1-203ENSMUST00000209398 3437 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
Six4Q61321 Setdb2-205ENSMUST00000161459 2995 ntAPPRIS P2 TSL 1 (best) BASIC12.6□□□□□ -0.39
Six4Q61321 Eif3j1-201ENSMUST00000028668 5413 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Six4Q61321 Srr-203ENSMUST00000108448 3239 ntAPPRIS P1 TSL 5 BASIC12.6□□□□□ -0.39
Six4Q61321 Micu1-204ENSMUST00000165563 2442 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
Six4Q61321 AC122228.1-201ENSMUST00000223113 2057 ntTSL 5 BASIC12.6□□□□□ -0.39
Six4Q61321 Cand1-201ENSMUST00000020315 7766 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Six4Q61321 Wdr53-201ENSMUST00000023474 1394 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Six4Q61321 Osbp2-203ENSMUST00000102950 3077 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
Six4Q61321 Cox19-201ENSMUST00000049630 2461 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Six4Q61321 Ripk3-201ENSMUST00000022830 1892 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Six4Q61321 Gm14723-201ENSMUST00000118686 215 ntBASIC12.6□□□□□ -0.39
Six4Q61321 0610037L13Rik-205ENSMUST00000119394 741 ntTSL 3 BASIC12.6□□□□□ -0.39
Six4Q61321 Gm16555-201ENSMUST00000159971 1199 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Six4Q61321 Gm42838-201ENSMUST00000196503 439 ntTSL 5 BASIC12.6□□□□□ -0.39
Six4Q61321 Gm43179-201ENSMUST00000198797 275 ntBASIC12.6□□□□□ -0.39
Six4Q61321 Ptprk-203ENSMUST00000218359 4669 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
Six4Q61321 U2af1l4-201ENSMUST00000043273 884 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Six4Q61321 Zdhhc12-201ENSMUST00000081838 1187 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Six4Q61321 Spaca4-201ENSMUST00000094424 707 ntAPPRIS P1 BASIC12.6□□□□□ -0.39
Six4Q61321 Sorcs1-206ENSMUST00000209783 3489 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Six4Q61321 Brd2-202ENSMUST00000095347 2617 ntTSL 5 BASIC12.6□□□□□ -0.39
Six4Q61321 Olfr533-204ENSMUST00000216258 2874 ntAPPRIS P1 TSL 5 BASIC12.6□□□□□ -0.39
Six4Q61321 H2-T22-203ENSMUST00000080015 1761 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
Six4Q61321 S1pr3-201ENSMUST00000087978 4463 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Six4Q61321 Plpbp-201ENSMUST00000033875 3603 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Six4Q61321 Bcl2l15-202ENSMUST00000106822 1902 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Six4Q61321 Ppp1r15a-201ENSMUST00000042105 2333 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Six4Q61321 Nr4a3-201ENSMUST00000030025 5720 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Six4Q61321 Tubb2a-ps2-201ENSMUST00000221547 1339 ntBASIC12.6□□□□□ -0.39
Six4Q61321 Cipc-211ENSMUST00000191463 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
Six4Q61321 Fam53b-201ENSMUST00000065371 5052 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Six4Q61321 Rara-201ENSMUST00000068133 3384 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Retrieved 100 of 76,532 protein–RNA pairs in 37.5 ms