Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 1300017J02Rik-201ENSMUST00000035163 2284 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Upf3aQ3ULJ3 Srrm1-203ENSMUST00000105861 3797 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
Upf3aQ3ULJ3 Gm45342-201ENSMUST00000210903 1363 ntBASIC13.16□□□□□ -0.3
Upf3aQ3ULJ3 Klk1b16-201ENSMUST00000005933 1387 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Upf3aQ3ULJ3 Mlxip-201ENSMUST00000068237 7303 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Upf3aQ3ULJ3 Pcdha11-203ENSMUST00000192447 4583 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Upf3aQ3ULJ3 Tekt3-201ENSMUST00000035732 1748 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Upf3aQ3ULJ3 Trim50-202ENSMUST00000111180 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Upf3aQ3ULJ3 4731419I09Rik-201ENSMUST00000180791 2820 ntTSL 2 BASIC13.16□□□□□ -0.3
Upf3aQ3ULJ3 Phf24-201ENSMUST00000069184 6392 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Upf3aQ3ULJ3 Esm1-201ENSMUST00000038144 2097 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Upf3aQ3ULJ3 Slc4a5-201ENSMUST00000039212 5123 ntAPPRIS P2 TSL 5 BASIC13.16□□□□□ -0.3
Upf3aQ3ULJ3 Amz2-203ENSMUST00000103061 1832 ntAPPRIS P2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Upf3aQ3ULJ3 Zfp367-201ENSMUST00000059817 3532 ntAPPRIS P2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Upf3aQ3ULJ3 Shank2-203ENSMUST00000105902 8988 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
Upf3aQ3ULJ3 Fam110a-203ENSMUST00000109864 1591 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Upf3aQ3ULJ3 Tead3-207ENSMUST00000219703 1320 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Upf3aQ3ULJ3 Tcea1-201ENSMUST00000081551 2547 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Upf3aQ3ULJ3 Rgs11-202ENSMUST00000122058 2005 ntAPPRIS ALT2 TSL 2 BASIC13.15□□□□□ -0.3
Upf3aQ3ULJ3 Rad9b-202ENSMUST00000117263 2371 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Upf3aQ3ULJ3 Sp2-201ENSMUST00000062652 2367 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Upf3aQ3ULJ3 Wbp11-201ENSMUST00000116514 2739 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Upf3aQ3ULJ3 Grm2-201ENSMUST00000023959 4711 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
Upf3aQ3ULJ3 Dnaaf1-201ENSMUST00000093100 2821 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Upf3aQ3ULJ3 Mfsd4b4-202ENSMUST00000178563 3523 ntTSL 5 BASIC13.15□□□□□ -0.3
Upf3aQ3ULJ3 Gm44891-201ENSMUST00000208817 2223 ntBASIC13.15□□□□□ -0.3
Upf3aQ3ULJ3 D230025D16Rik-201ENSMUST00000034361 2916 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Upf3aQ3ULJ3 Gan-201ENSMUST00000064488 2652 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Upf3aQ3ULJ3 Emc3-201ENSMUST00000032425 1985 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Upf3aQ3ULJ3 Gm22133-201ENSMUST00000102082 109 ntBASIC13.15□□□□□ -0.3
Upf3aQ3ULJ3 Lyzl6-202ENSMUST00000107014 802 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Upf3aQ3ULJ3 Ankrd29-202ENSMUST00000122408 850 ntTSL 5 BASIC13.15□□□□□ -0.3
Upf3aQ3ULJ3 Gm14396-201ENSMUST00000126966 548 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Upf3aQ3ULJ3 Mcfd2-205ENSMUST00000145895 751 ntTSL 2 BASIC13.15□□□□□ -0.3
Upf3aQ3ULJ3 Gm19353-201ENSMUST00000184561 445 ntBASIC13.15□□□□□ -0.3
Upf3aQ3ULJ3 Gm28375-201ENSMUST00000185304 430 ntTSL 3 BASIC13.15□□□□□ -0.3
Upf3aQ3ULJ3 Gm44958-201ENSMUST00000203734 736 ntBASIC13.15□□□□□ -0.3
Upf3aQ3ULJ3 Gm45770-201ENSMUST00000212105 616 ntBASIC13.15□□□□□ -0.3
Upf3aQ3ULJ3 AC159819.2-201ENSMUST00000216151 342 ntBASIC13.15□□□□□ -0.3
Upf3aQ3ULJ3 AC154276.3-201ENSMUST00000227643 998 ntBASIC13.15□□□□□ -0.3
Upf3aQ3ULJ3 Azgp1-201ENSMUST00000035390 1297 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Upf3aQ3ULJ3 Ntng1-201ENSMUST00000051253 327 ntBASIC13.15□□□□□ -0.3
Upf3aQ3ULJ3 Ufc1-201ENSMUST00000080001 1007 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Upf3aQ3ULJ3 Spaca4-201ENSMUST00000094424 707 ntAPPRIS P1 BASIC13.15□□□□□ -0.3
Upf3aQ3ULJ3 Smyd1-203ENSMUST00000114188 2064 ntTSL 5 BASIC13.15□□□□□ -0.3
Upf3aQ3ULJ3 Gm43081-201ENSMUST00000199082 1380 ntBASIC13.15□□□□□ -0.3
Upf3aQ3ULJ3 Neu2-204ENSMUST00000165109 1824 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
Upf3aQ3ULJ3 Klhl30-201ENSMUST00000027533 3089 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Upf3aQ3ULJ3 Ssh3-202ENSMUST00000113852 2735 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Upf3aQ3ULJ3 Elp5-201ENSMUST00000108594 1454 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Upf3aQ3ULJ3 Slc7a4-202ENSMUST00000090165 1907 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Upf3aQ3ULJ3 Dysf-201ENSMUST00000081904 6660 ntAPPRIS P4 TSL 1 (best) BASIC13.15□□□□□ -0.3
Upf3aQ3ULJ3 Cab39-201ENSMUST00000097666 2369 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
Upf3aQ3ULJ3 Exoc6b-203ENSMUST00000160197 5439 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Upf3aQ3ULJ3 Adam32-202ENSMUST00000121438 2450 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
Upf3aQ3ULJ3 AC123619.2-202ENSMUST00000225097 1568 ntBASIC13.15□□□□□ -0.3
Upf3aQ3ULJ3 Polr3e-202ENSMUST00000106483 3001 ntAPPRIS P3 TSL 5 BASIC13.15□□□□□ -0.3
Upf3aQ3ULJ3 Tctn3-203ENSMUST00000135795 1686 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.31
Upf3aQ3ULJ3 5033406O09Rik-201ENSMUST00000221314 1662 ntTSL 1 (best) BASIC13.15□□□□□ -0.31
Upf3aQ3ULJ3 Atg16l1-201ENSMUST00000027512 3130 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.31
Upf3aQ3ULJ3 Auts2-208ENSMUST00000161374 4216 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.31
Upf3aQ3ULJ3 Eif5b-201ENSMUST00000027252 7797 ntAPPRIS P1 TSL 2 BASIC13.15□□□□□ -0.31
Upf3aQ3ULJ3 Ccr7-201ENSMUST00000103134 1978 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Upf3aQ3ULJ3 Trim27-205ENSMUST00000221464 1400 ntTSL 5 BASIC13.14□□□□□ -0.31
Upf3aQ3ULJ3 Myt1l-204ENSMUST00000218198 2735 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Upf3aQ3ULJ3 Rorc-204ENSMUST00000200009 1543 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Upf3aQ3ULJ3 Mau2-202ENSMUST00000168013 5323 ntAPPRIS ALT2 TSL 5 BASIC13.14□□□□□ -0.31
Upf3aQ3ULJ3 Mtch2-211ENSMUST00000150232 2377 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Upf3aQ3ULJ3 Srsf10-205ENSMUST00000126641 3754 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Upf3aQ3ULJ3 Oxct1-205ENSMUST00000138927 1743 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Upf3aQ3ULJ3 Enox1-201ENSMUST00000022589 3142 ntAPPRIS P2 TSL 1 (best) BASIC13.14□□□□□ -0.31
Upf3aQ3ULJ3 Nphs2-201ENSMUST00000027896 3116 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Upf3aQ3ULJ3 Ggt6-201ENSMUST00000076443 1818 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Upf3aQ3ULJ3 A730062M13Rik-201ENSMUST00000192843 1910 ntBASIC13.14□□□□□ -0.31
Upf3aQ3ULJ3 Def8-203ENSMUST00000093049 1909 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
Upf3aQ3ULJ3 Hadhb-203ENSMUST00000114786 2048 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Upf3aQ3ULJ3 Oxr1-204ENSMUST00000110297 4596 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Upf3aQ3ULJ3 Tmem74bos-201ENSMUST00000137422 390 ntTSL 3 BASIC13.14□□□□□ -0.31
Upf3aQ3ULJ3 1700119H24Rik-201ENSMUST00000187558 588 ntTSL 5 BASIC13.14□□□□□ -0.31
Upf3aQ3ULJ3 Gm38804-201ENSMUST00000203998 767 ntTSL 3 BASIC13.14□□□□□ -0.31
Upf3aQ3ULJ3 AC160052.1-201ENSMUST00000213173 1248 ntTSL 5 BASIC13.14□□□□□ -0.31
Upf3aQ3ULJ3 AC158523.3-201ENSMUST00000220664 864 ntTSL 5 BASIC13.14□□□□□ -0.31
Upf3aQ3ULJ3 Gm270-201ENSMUST00000223010 976 ntBASIC13.14□□□□□ -0.31
Upf3aQ3ULJ3 Hist1h3a-201ENSMUST00000091701 534 ntAPPRIS P1 BASIC13.14□□□□□ -0.31
Upf3aQ3ULJ3 Fam43a-201ENSMUST00000059078 3075 ntAPPRIS P1 BASIC13.14□□□□□ -0.31
Upf3aQ3ULJ3 Cfap69-201ENSMUST00000054865 4956 ntAPPRIS P2 TSL 1 (best) BASIC13.14□□□□□ -0.31
Upf3aQ3ULJ3 Pnp2-201ENSMUST00000095925 1372 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Upf3aQ3ULJ3 Tbkbp1-205ENSMUST00000118375 3288 ntAPPRIS P2 TSL 5 BASIC13.14□□□□□ -0.31
Upf3aQ3ULJ3 Irx6-201ENSMUST00000034185 3370 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
Upf3aQ3ULJ3 Txlng-203ENSMUST00000112315 2525 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Upf3aQ3ULJ3 Gpc2-201ENSMUST00000014089 2514 ntAPPRIS ALT2 TSL 5 BASIC13.14□□□□□ -0.31
Upf3aQ3ULJ3 Dlgap1-202ENSMUST00000097288 2626 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Upf3aQ3ULJ3 Bhlhb9-204ENSMUST00000180025 2812 ntAPPRIS P1 TSL 2 BASIC13.14□□□□□ -0.31
Upf3aQ3ULJ3 Csrnp1-201ENSMUST00000035101 2906 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Upf3aQ3ULJ3 Gm43858-201ENSMUST00000199418 1778 ntBASIC13.14□□□□□ -0.31
Upf3aQ3ULJ3 Il7-205ENSMUST00000194279 4858 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Upf3aQ3ULJ3 Slc23a4-201ENSMUST00000044387 2175 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Upf3aQ3ULJ3 Ggn-202ENSMUST00000098609 2653 ntAPPRIS P2 TSL 1 (best) BASIC13.14□□□□□ -0.31
Upf3aQ3ULJ3 Zfp957-202ENSMUST00000161649 2751 ntAPPRIS P1 TSL 5 BASIC13.14□□□□□ -0.31
Upf3aQ3ULJ3 Dusp19-201ENSMUST00000028384 1632 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Retrieved 100 of 76,532 protein–RNA pairs in 77.8 ms