Protein–RNA interactions for Protein: Q08624

Hoxc4, Homeobox protein Hox-C4, mousemouse

Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxc4Q08624 Ssr1-203ENSMUST00000225246 1825 ntBASIC12.02□□□□□ -0.49
Hoxc4Q08624 Grm6-201ENSMUST00000000631 4291 ntAPPRIS P1 TSL 5 BASIC12.02□□□□□ -0.49
Hoxc4Q08624 Pepd-201ENSMUST00000075068 1881 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Hoxc4Q08624 Dnmt3l-202ENSMUST00000123940 1452 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Hoxc4Q08624 Tfe3-202ENSMUST00000079542 3163 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Hoxc4Q08624 AC126262.1-201ENSMUST00000221802 1904 ntBASIC12.01□□□□□ -0.49
Hoxc4Q08624 Lrrfip2-213ENSMUST00000216430 1525 ntTSL 5 BASIC12.01□□□□□ -0.49
Hoxc4Q08624 Cpeb3-204ENSMUST00000126188 4224 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Hoxc4Q08624 Adgrv1-206ENSMUST00000128120 1591 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Hoxc4Q08624 Cacna2d1-205ENSMUST00000167946 7436 ntAPPRIS ALT1 TSL 5 BASIC12.01□□□□□ -0.49
Hoxc4Q08624 Ccndbp1-201ENSMUST00000060455 1569 ntAPPRIS P2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Hoxc4Q08624 Il1rapl2-202ENSMUST00000113063 3437 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Hoxc4Q08624 Gorab-201ENSMUST00000045138 2538 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Hoxc4Q08624 Aire-202ENSMUST00000105395 1630 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Hoxc4Q08624 Tigd2-201ENSMUST00000062626 3007 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Hoxc4Q08624 Fitm2-201ENSMUST00000109418 3967 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Hoxc4Q08624 Pex3-201ENSMUST00000019945 2129 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Hoxc4Q08624 Styxl1-208ENSMUST00000178515 1651 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Hoxc4Q08624 Taf2-201ENSMUST00000041733 5031 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Hoxc4Q08624 Gm23912-201ENSMUST00000104687 87 ntBASIC12.01□□□□□ -0.49
Hoxc4Q08624 Wsb2-ps-201ENSMUST00000117937 1217 ntBASIC12.01□□□□□ -0.49
Hoxc4Q08624 Gng7-205ENSMUST00000118465 875 ntAPPRIS ALT1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Hoxc4Q08624 Sh2d6-203ENSMUST00000159877 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Hoxc4Q08624 Sh2d6-206ENSMUST00000162561 1251 ntAPPRIS P5 TSL 1 (best) BASIC12.01□□□□□ -0.49
Hoxc4Q08624 Tnnt1-213ENSMUST00000178163 934 ntAPPRIS ALT2 TSL 5 BASIC12.01□□□□□ -0.49
Hoxc4Q08624 Gm27627-201ENSMUST00000183644 150 ntBASIC12.01□□□□□ -0.49
Hoxc4Q08624 Gm7003-201ENSMUST00000195089 312 ntBASIC12.01□□□□□ -0.49
Hoxc4Q08624 4930504D19Rik-201ENSMUST00000204799 349 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Hoxc4Q08624 Ggps1-204ENSMUST00000221713 667 ntTSL 3 BASIC12.01□□□□□ -0.49
Hoxc4Q08624 AC147241.1-201ENSMUST00000222173 785 ntTSL 3 BASIC12.01□□□□□ -0.49
Hoxc4Q08624 Defb22-201ENSMUST00000028966 628 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Hoxc4Q08624 Rps15-202ENSMUST00000068408 500 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Hoxc4Q08624 Lrmda-201ENSMUST00000075639 908 ntAPPRIS P2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Hoxc4Q08624 Sfxn3-202ENSMUST00000084493 2843 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Hoxc4Q08624 Ehbp1l1-201ENSMUST00000049295 6404 ntAPPRIS P4 TSL 1 (best) BASIC12.01□□□□□ -0.49
Hoxc4Q08624 Armcx1-201ENSMUST00000035748 2303 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Hoxc4Q08624 Slc25a15-201ENSMUST00000033871 3430 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Hoxc4Q08624 Gm13187-202ENSMUST00000133873 1321 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Hoxc4Q08624 Nkd2-201ENSMUST00000022051 4016 ntAPPRIS P3 TSL 1 (best) BASIC12.01□□□□□ -0.49
Hoxc4Q08624 Mthfsd-210ENSMUST00000139782 1366 ntTSL 5 BASIC12.01□□□□□ -0.49
Hoxc4Q08624 Gm18782-201ENSMUST00000209023 1399 ntBASIC12.01□□□□□ -0.49
Hoxc4Q08624 Lcor-201ENSMUST00000067795 4810 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Hoxc4Q08624 Cenpo-201ENSMUST00000020981 2037 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Hoxc4Q08624 Gpr35-205ENSMUST00000186298 2647 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Hoxc4Q08624 Dlgap1-202ENSMUST00000097288 2626 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Hoxc4Q08624 Ncor2-203ENSMUST00000111393 8661 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Hoxc4Q08624 Nbeal2-210ENSMUST00000167320 8803 ntAPPRIS P2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Hoxc4Q08624 Rorc-204ENSMUST00000200009 1543 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Hoxc4Q08624 Gm10787-201ENSMUST00000099552 1548 ntTSL 2 BASIC12.01□□□□□ -0.49
Hoxc4Q08624 Pex2-206ENSMUST00000195855 1587 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Hoxc4Q08624 Gpsm2-201ENSMUST00000029482 3498 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Hoxc4Q08624 Lzts3-201ENSMUST00000045761 4201 ntAPPRIS P3 TSL 5 BASIC12□□□□□ -0.49
Hoxc4Q08624 B4galnt3-203ENSMUST00000212457 2958 ntAPPRIS ALT2 TSL 5 BASIC12□□□□□ -0.49
Hoxc4Q08624 Rab11a-208ENSMUST00000172298 2336 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Hoxc4Q08624 Asb10-201ENSMUST00000048302 2327 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Hoxc4Q08624 Gm16090-201ENSMUST00000130296 1704 ntTSL 1 (best) BASIC12□□□□□ -0.49
Hoxc4Q08624 Mfsd4a-205ENSMUST00000144548 3288 ntTSL 1 (best) BASIC12□□□□□ -0.49
Hoxc4Q08624 Wapl-205ENSMUST00000169910 4066 ntAPPRIS P3 TSL 1 (best) BASIC12□□□□□ -0.49
Hoxc4Q08624 Sec61g-203ENSMUST00000109643 1862 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Hoxc4Q08624 Rhbdd2-201ENSMUST00000043707 4207 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Hoxc4Q08624 Vmp1-201ENSMUST00000018315 2787 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Hoxc4Q08624 Ighv1-80-201ENSMUST00000103547 351 ntAPPRIS P1 BASIC12□□□□□ -0.49
Hoxc4Q08624 Limd2-203ENSMUST00000106875 936 ntAPPRIS P1 TSL 3 BASIC12□□□□□ -0.49
Hoxc4Q08624 Gm16066-201ENSMUST00000118575 1086 ntTSL 3 BASIC12□□□□□ -0.49
Hoxc4Q08624 Gm12266-201ENSMUST00000120311 962 ntBASIC12□□□□□ -0.49
Hoxc4Q08624 Gm15891-201ENSMUST00000127307 611 ntTSL 5 BASIC12□□□□□ -0.49
Hoxc4Q08624 1700121N20Rik-201ENSMUST00000167922 1027 ntTSL 1 (best) BASIC12□□□□□ -0.49
Hoxc4Q08624 Mir3102-201ENSMUST00000175555 104 ntBASIC12□□□□□ -0.49
Hoxc4Q08624 Nr1h2-ps-201ENSMUST00000183844 478 ntBASIC12□□□□□ -0.49
Hoxc4Q08624 9230114K14Rik-203ENSMUST00000199547 437 ntTSL 3 BASIC12□□□□□ -0.49
Hoxc4Q08624 Gm44882-201ENSMUST00000205702 802 ntBASIC12□□□□□ -0.49
Hoxc4Q08624 4930479H17Rik-201ENSMUST00000208824 292 ntTSL 1 (best) BASIC12□□□□□ -0.49
Hoxc4Q08624 Abhd14b-210ENSMUST00000217496 631 ntTSL 5 BASIC12□□□□□ -0.49
Hoxc4Q08624 Prorsd1-201ENSMUST00000039900 918 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Hoxc4Q08624 Mettl5-201ENSMUST00000060447 968 ntAPPRIS P1 TSL 2 BASIC12□□□□□ -0.49
Hoxc4Q08624 Nmral1-201ENSMUST00000074970 1155 ntTSL 1 (best) BASIC12□□□□□ -0.49
Hoxc4Q08624 Pgghg-201ENSMUST00000079403 2981 ntAPPRIS P2 TSL 1 (best) BASIC12□□□□□ -0.49
Hoxc4Q08624 Samd7-201ENSMUST00000108262 3144 ntAPPRIS P1 TSL 5 BASIC12□□□□□ -0.49
Hoxc4Q08624 Il6ra-202ENSMUST00000197679 8639 ntAPPRIS ALT2 TSL 1 (best) BASIC12□□□□□ -0.49
Hoxc4Q08624 Pla2g15-204ENSMUST00000212963 2578 ntTSL 1 (best) BASIC12□□□□□ -0.49
Hoxc4Q08624 Tmem201-203ENSMUST00000105687 3697 ntAPPRIS ALT2 TSL 1 (best) BASIC12□□□□□ -0.49
Hoxc4Q08624 Eif4enif1-202ENSMUST00000110048 3712 ntTSL 5 BASIC12□□□□□ -0.49
Hoxc4Q08624 Rita1-207ENSMUST00000177800 1668 ntAPPRIS P1 TSL 5 BASIC12□□□□□ -0.49
Hoxc4Q08624 Lsp1-201ENSMUST00000018963 1695 ntAPPRIS ALT2 TSL 1 (best) BASIC12□□□□□ -0.49
Hoxc4Q08624 Aldh9a1-201ENSMUST00000028004 2835 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Hoxc4Q08624 Epb41-203ENSMUST00000084253 5141 ntAPPRIS ALT2 TSL 1 (best) BASIC12□□□□□ -0.49
Hoxc4Q08624 Slc2a4-203ENSMUST00000141837 1776 ntTSL 1 (best) BASIC12□□□□□ -0.49
Hoxc4Q08624 Cct5-201ENSMUST00000022842 1853 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Hoxc4Q08624 Gm26599-201ENSMUST00000180590 3189 ntTSL 5 BASIC12□□□□□ -0.49
Hoxc4Q08624 Cldn15-202ENSMUST00000111093 1902 ntAPPRIS P1 TSL 5 BASIC11.99□□□□□ -0.49
Hoxc4Q08624 Mink1-203ENSMUST00000079244 4829 ntAPPRIS ALT2 TSL 1 (best) BASIC11.99□□□□□ -0.49
Hoxc4Q08624 AC159195.1-201ENSMUST00000225867 2086 ntBASIC11.99□□□□□ -0.49
Hoxc4Q08624 Tmem30a-201ENSMUST00000034878 3658 ntAPPRIS P2 TSL 1 (best) BASIC11.99□□□□□ -0.49
Hoxc4Q08624 Inpp5a-202ENSMUST00000097975 2301 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
Hoxc4Q08624 Hdac11-201ENSMUST00000041736 2653 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Hoxc4Q08624 Vmn1r65-201ENSMUST00000086338 2682 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Hoxc4Q08624 Xrra1-201ENSMUST00000036155 2731 ntAPPRIS P2 TSL 1 (best) BASIC11.99□□□□□ -0.49
Hoxc4Q08624 Zbtb33-201ENSMUST00000049740 5122 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Hoxc4Q08624 Chaf1a-201ENSMUST00000002914 3308 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Hoxc4Q08624 Satb2-201ENSMUST00000042857 6277 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
Retrieved 100 of 76,532 protein–RNA pairs in 67.4 ms