Protein–RNA interactions for Protein: Q04857

Col6a1, Collagen alpha-1(VI) chain, mousemouse

Predictions only

Length 1,025 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a1Q04857 Gm5641-202ENSMUST00000198699 1080 ntBASIC13.84□□□□□ -0.19
Col6a1Q04857 Fam168a-204ENSMUST00000207564 1083 ntTSL 5 BASIC13.84□□□□□ -0.19
Col6a1Q04857 5330413P13Rik-205ENSMUST00000210961 913 ntTSL 5 BASIC13.84□□□□□ -0.19
Col6a1Q04857 AC166992.1-201ENSMUST00000216356 565 ntBASIC13.84□□□□□ -0.19
Col6a1Q04857 Gm3898-202ENSMUST00000216905 328 ntTSL 2 BASIC13.84□□□□□ -0.19
Col6a1Q04857 AC166344.1-202ENSMUST00000224139 234 ntBASIC13.84□□□□□ -0.19
Col6a1Q04857 Th-201ENSMUST00000000219 1829 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Col6a1Q04857 Dct-201ENSMUST00000022725 2202 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Col6a1Q04857 Tcf4-204ENSMUST00000114978 2437 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
Col6a1Q04857 Gm26551-201ENSMUST00000181262 2432 ntTSL 5 BASIC13.84□□□□□ -0.19
Col6a1Q04857 Ankmy2-201ENSMUST00000041640 2456 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Col6a1Q04857 Mpp3-204ENSMUST00000107168 3094 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
Col6a1Q04857 Bbs5-202ENSMUST00000112286 1397 ntTSL 5 BASIC13.83□□□□□ -0.19
Col6a1Q04857 Gm6580-201ENSMUST00000117504 1357 ntBASIC13.83□□□□□ -0.19
Col6a1Q04857 Ap1s2-201ENSMUST00000033734 1785 ntAPPRIS ALT1 TSL 1 (best) BASIC13.83□□□□□ -0.19
Col6a1Q04857 Nlrp6-204ENSMUST00000184560 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.19
Col6a1Q04857 Nudt21-201ENSMUST00000034204 5010 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
Col6a1Q04857 Hectd2-208ENSMUST00000169036 3842 ntAPPRIS ALT1 TSL 1 (best) BASIC13.83□□□□□ -0.19
Col6a1Q04857 Abo-202ENSMUST00000114045 1811 ntAPPRIS ALT2 TSL 5 BASIC13.83□□□□□ -0.2
Col6a1Q04857 Gm17189-201ENSMUST00000163707 1630 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
Col6a1Q04857 Serpinb13-201ENSMUST00000027564 1607 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Col6a1Q04857 Podn-201ENSMUST00000044248 2885 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
Col6a1Q04857 Ankfn1-201ENSMUST00000050983 2665 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
Col6a1Q04857 Tspan12-201ENSMUST00000031678 2490 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Col6a1Q04857 Sumf2-204ENSMUST00000171300 2264 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Col6a1Q04857 Secisbp2-201ENSMUST00000040117 3328 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Col6a1Q04857 Lrpprc-201ENSMUST00000112308 4393 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Col6a1Q04857 Mtmr2-201ENSMUST00000034396 3788 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Col6a1Q04857 Naa50-201ENSMUST00000063520 3557 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
Col6a1Q04857 Cd27-202ENSMUST00000112281 832 ntTSL 3 BASIC13.83□□□□□ -0.2
Col6a1Q04857 Gm12380-201ENSMUST00000119012 544 ntBASIC13.83□□□□□ -0.2
Col6a1Q04857 Gm13888-201ENSMUST00000119148 422 ntBASIC13.83□□□□□ -0.2
Col6a1Q04857 Cspp1-204ENSMUST00000119714 1268 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
Col6a1Q04857 Gm14832-201ENSMUST00000121289 322 ntBASIC13.83□□□□□ -0.2
Col6a1Q04857 Tmem190-201ENSMUST00000013235 589 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Col6a1Q04857 Gm20521-201ENSMUST00000134077 1245 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
Col6a1Q04857 Gm5778-201ENSMUST00000171003 1072 ntBASIC13.83□□□□□ -0.2
Col6a1Q04857 Ccdc28a-203ENSMUST00000173243 590 ntTSL 5 BASIC13.83□□□□□ -0.2
Col6a1Q04857 Gm21976-204ENSMUST00000186911 528 ntTSL 5 BASIC13.83□□□□□ -0.2
Col6a1Q04857 AC156504.2-201ENSMUST00000213800 711 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
Col6a1Q04857 Gm5369-201ENSMUST00000217499 588 ntBASIC13.83□□□□□ -0.2
Col6a1Q04857 Gm21411-201ENSMUST00000049821 750 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Col6a1Q04857 Pcca-201ENSMUST00000038374 2592 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Col6a1Q04857 Lsp1-205ENSMUST00000105968 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
Col6a1Q04857 Tmem132e-202ENSMUST00000092852 4105 ntAPPRIS ALT2 TSL 2 BASIC13.83□□□□□ -0.2
Col6a1Q04857 Col9a3-201ENSMUST00000103059 2846 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Col6a1Q04857 Atp6ap1-202ENSMUST00000114171 2157 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
Col6a1Q04857 Ildr2-201ENSMUST00000111416 8251 ntAPPRIS P2 TSL 1 (best) BASIC13.83□□□□□ -0.2
Col6a1Q04857 Dhtkd1-202ENSMUST00000095147 5480 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
Col6a1Q04857 Pcdh7-203ENSMUST00000191837 8785 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
Col6a1Q04857 Usp33-209ENSMUST00000197748 4183 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
Col6a1Q04857 0610009O20Rik-201ENSMUST00000025314 2404 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Col6a1Q04857 Gm13187-202ENSMUST00000133873 1321 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
Col6a1Q04857 Tubb4b-ps2-201ENSMUST00000187481 1337 ntBASIC13.83□□□□□ -0.2
Col6a1Q04857 Tnk2os-201ENSMUST00000141256 1392 ntTSL 2 BASIC13.83□□□□□ -0.2
Col6a1Q04857 C1qtnf1-202ENSMUST00000106286 2512 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Col6a1Q04857 C1qtnf1-201ENSMUST00000017590 2532 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Col6a1Q04857 Irf1-202ENSMUST00000108920 2137 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
Col6a1Q04857 Gne-209ENSMUST00000173234 2149 ntTSL 5 BASIC13.82□□□□□ -0.2
Col6a1Q04857 Slitrk3-201ENSMUST00000059407 3587 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Col6a1Q04857 5430400D12Rik-201ENSMUST00000181717 1690 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Col6a1Q04857 Uimc1-202ENSMUST00000099496 1678 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Col6a1Q04857 Sema4a-213ENSMUST00000165898 3125 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
Col6a1Q04857 Arid1b-202ENSMUST00000115797 11325 ntAPPRIS P2 TSL 5 BASIC13.82□□□□□ -0.2
Col6a1Q04857 Hcrtr1-203ENSMUST00000120154 2161 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Col6a1Q04857 Tfe3-202ENSMUST00000079542 3163 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Col6a1Q04857 Gad1-205ENSMUST00000130998 1705 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Col6a1Q04857 Gtf2f1-201ENSMUST00000002733 1717 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Col6a1Q04857 Selenbp1-201ENSMUST00000090839 1712 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Col6a1Q04857 Selenbp2-201ENSMUST00000090848 1719 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Col6a1Q04857 Klhl26-205ENSMUST00000210250 2974 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Col6a1Q04857 Elovl6-202ENSMUST00000197070 2275 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Col6a1Q04857 Oxr1-204ENSMUST00000110297 4596 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Col6a1Q04857 Pax5-204ENSMUST00000107826 1228 ntTSL 5 BASIC13.82□□□□□ -0.2
Col6a1Q04857 Cspp1-202ENSMUST00000117415 1272 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Col6a1Q04857 Gm12029-201ENSMUST00000120073 832 ntBASIC13.82□□□□□ -0.2
Col6a1Q04857 Gm12690-201ENSMUST00000132108 354 ntTSL 3 BASIC13.82□□□□□ -0.2
Col6a1Q04857 Gm11211-201ENSMUST00000143618 359 ntTSL 3 BASIC13.82□□□□□ -0.2
Col6a1Q04857 Plekhd1os-201ENSMUST00000153297 944 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Col6a1Q04857 Arid3b-204ENSMUST00000164010 1259 ntTSL 5 BASIC13.82□□□□□ -0.2
Col6a1Q04857 Chtf8-203ENSMUST00000176090 615 ntTSL 5 BASIC13.82□□□□□ -0.2
Col6a1Q04857 Gm27175-201ENSMUST00000183759 606 ntTSL 3 BASIC13.82□□□□□ -0.2
Col6a1Q04857 Gm27223-201ENSMUST00000184653 606 ntTSL 3 BASIC13.82□□□□□ -0.2
Col6a1Q04857 Gm45598-202ENSMUST00000210719 986 ntBASIC13.82□□□□□ -0.2
Col6a1Q04857 Gm26953-204ENSMUST00000212526 553 ntTSL 5 BASIC13.82□□□□□ -0.2
Col6a1Q04857 AC025913.2-202ENSMUST00000219248 605 ntTSL 5 BASIC13.82□□□□□ -0.2
Col6a1Q04857 9530020I12Rik-203ENSMUST00000219371 819 ntTSL 3 BASIC13.82□□□□□ -0.2
Col6a1Q04857 Tepp-201ENSMUST00000098480 660 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
Col6a1Q04857 Snph-202ENSMUST00000094456 4607 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
Col6a1Q04857 Ptch2-201ENSMUST00000030443 4382 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Col6a1Q04857 Rnf10-202ENSMUST00000112096 3112 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
Col6a1Q04857 Neu2-204ENSMUST00000165109 1824 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
Col6a1Q04857 Kcnj3-201ENSMUST00000067101 5215 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Col6a1Q04857 Kcnab2-203ENSMUST00000159186 1552 ntTSL 5 BASIC13.82□□□□□ -0.2
Col6a1Q04857 Gngt2-201ENSMUST00000036088 1587 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Col6a1Q04857 Trpm4-201ENSMUST00000042194 4234 ntAPPRIS P2 TSL 1 (best) BASIC13.82□□□□□ -0.2
Col6a1Q04857 Catsper3-202ENSMUST00000109898 1311 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
Col6a1Q04857 Necab1-202ENSMUST00000108273 2135 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Col6a1Q04857 Rad54b-202ENSMUST00000095145 2403 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Col6a1Q04857 Chchd3-202ENSMUST00000115091 1363 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Retrieved 100 of 76,532 protein–RNA pairs in 68 ms