Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Btrc-202ENSMUST00000111936 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC10.83□□□□□ -0.68
Nkx3-1P97436 Gm10433-202ENSMUST00000146364 1984 ntTSL 2 BASIC10.83□□□□□ -0.68
Nkx3-1P97436 Med28-205ENSMUST00000156481 4560 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
Nkx3-1P97436 Strip1-201ENSMUST00000064759 3215 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
Nkx3-1P97436 Adi1-201ENSMUST00000020957 1652 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
Nkx3-1P97436 Fgd5-201ENSMUST00000089334 6095 ntAPPRIS P2 TSL 1 (best) BASIC10.83□□□□□ -0.68
Nkx3-1P97436 Adcyap1r1-206ENSMUST00000167234 1575 ntAPPRIS ALT2 TSL 5 BASIC10.83□□□□□ -0.68
Nkx3-1P97436 Pappa-201ENSMUST00000084501 11027 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
Nkx3-1P97436 Bmp3-201ENSMUST00000031278 6548 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
Nkx3-1P97436 Usp20-201ENSMUST00000061544 1360 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
Nkx3-1P97436 Gm44891-201ENSMUST00000208817 2223 ntBASIC10.83□□□□□ -0.68
Nkx3-1P97436 Ighv5-4-201ENSMUST00000103444 425 ntAPPRIS P1 BASIC10.83□□□□□ -0.68
Nkx3-1P97436 Cspp1-202ENSMUST00000117415 1272 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
Nkx3-1P97436 1700084C06Rik-201ENSMUST00000135674 750 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
Nkx3-1P97436 Gm43378-201ENSMUST00000199336 582 ntBASIC10.83□□□□□ -0.68
Nkx3-1P97436 Aprt-ps-201ENSMUST00000212311 505 ntBASIC10.83□□□□□ -0.68
Nkx3-1P97436 Gm39404-201ENSMUST00000216350 313 ntBASIC10.83□□□□□ -0.68
Nkx3-1P97436 AC125209.1-201ENSMUST00000225812 766 ntBASIC10.83□□□□□ -0.68
Nkx3-1P97436 Tnni3-201ENSMUST00000098859 912 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
Nkx3-1P97436 Kifc3-202ENSMUST00000169353 2898 ntAPPRIS ALT2 TSL 1 (best) BASIC10.83□□□□□ -0.68
Nkx3-1P97436 Rinl-201ENSMUST00000059857 2871 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
Nkx3-1P97436 Hadhb-203ENSMUST00000114786 2048 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
Nkx3-1P97436 Gucd1-201ENSMUST00000039796 3500 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
Nkx3-1P97436 A730062M13Rik-201ENSMUST00000192843 1910 ntBASIC10.83□□□□□ -0.68
Nkx3-1P97436 Kdm2a-201ENSMUST00000047898 8578 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
Nkx3-1P97436 Madd-209ENSMUST00000111371 5816 ntAPPRIS ALT2 TSL 2 BASIC10.83□□□□□ -0.68
Nkx3-1P97436 Madd-210ENSMUST00000111372 5813 ntAPPRIS ALT2 TSL 2 BASIC10.83□□□□□ -0.68
Nkx3-1P97436 Abcc5-202ENSMUST00000079158 5811 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
Nkx3-1P97436 Aire-202ENSMUST00000105395 1630 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
Nkx3-1P97436 Tnfrsf22-203ENSMUST00000146692 2298 ntAPPRIS P3 TSL 1 (best) BASIC10.83□□□□□ -0.68
Nkx3-1P97436 AC122197.2-201ENSMUST00000219196 1635 ntBASIC10.83□□□□□ -0.68
Nkx3-1P97436 Set-202ENSMUST00000102866 2824 ntAPPRIS P3 TSL 1 (best) BASIC10.83□□□□□ -0.68
Nkx3-1P97436 Rpusd2-201ENSMUST00000028796 2706 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
Nkx3-1P97436 AC079680.2-201ENSMUST00000219181 1306 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
Nkx3-1P97436 Sec62-201ENSMUST00000029256 3967 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
Nkx3-1P97436 Scarf1-201ENSMUST00000042808 2887 ntAPPRIS P2 TSL 1 (best) BASIC10.83□□□□□ -0.68
Nkx3-1P97436 Asb10-201ENSMUST00000048302 2327 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
Nkx3-1P97436 Il34-204ENSMUST00000150680 1796 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
Nkx3-1P97436 Stox2-209ENSMUST00000211882 9696 ntTSL 5 BASIC10.82□□□□□ -0.68
Nkx3-1P97436 Ptpn14-201ENSMUST00000027898 2666 ntAPPRIS ALT2 TSL 1 (best) BASIC10.82□□□□□ -0.68
Nkx3-1P97436 Chpf2-201ENSMUST00000088295 5371 ntAPPRIS P1 TSL 2 BASIC10.82□□□□□ -0.68
Nkx3-1P97436 Alg2-201ENSMUST00000044148 3021 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Nkx3-1P97436 Gabpb1-202ENSMUST00000089745 3254 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
Nkx3-1P97436 Cad-206ENSMUST00000201838 3153 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
Nkx3-1P97436 Bad-201ENSMUST00000025910 1451 ntAPPRIS P3 TSL 1 (best) BASIC10.82□□□□□ -0.68
Nkx3-1P97436 Nepn-201ENSMUST00000067085 1844 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Nkx3-1P97436 Chaf1a-201ENSMUST00000002914 3308 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Nkx3-1P97436 Spata21-201ENSMUST00000051907 2526 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Nkx3-1P97436 Lrriq4-201ENSMUST00000108265 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC10.82□□□□□ -0.68
Nkx3-1P97436 Kndc1-201ENSMUST00000053445 7299 ntAPPRIS P1 TSL 5 BASIC10.82□□□□□ -0.68
Nkx3-1P97436 Taok2-202ENSMUST00000117394 4985 ntAPPRIS P4 TSL 1 (best) BASIC10.82□□□□□ -0.68
Nkx3-1P97436 Ficd-201ENSMUST00000065698 3133 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Nkx3-1P97436 Gm12015-201ENSMUST00000117065 843 ntBASIC10.82□□□□□ -0.68
Nkx3-1P97436 Gm14263-201ENSMUST00000117955 746 ntBASIC10.82□□□□□ -0.68
Nkx3-1P97436 Gm16481-201ENSMUST00000119074 1227 ntBASIC10.82□□□□□ -0.68
Nkx3-1P97436 Gm12201-201ENSMUST00000120657 1234 ntBASIC10.82□□□□□ -0.68
Nkx3-1P97436 Gm11597-201ENSMUST00000121423 964 ntBASIC10.82□□□□□ -0.68
Nkx3-1P97436 Gm12678-201ENSMUST00000154177 692 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
Nkx3-1P97436 Gm24749-201ENSMUST00000157838 343 ntBASIC10.82□□□□□ -0.68
Nkx3-1P97436 Pmvk-203ENSMUST00000184515 1156 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
Nkx3-1P97436 Eloc-207ENSMUST00000187910 620 ntTSL 2 BASIC10.82□□□□□ -0.68
Nkx3-1P97436 Ighv5-7-201ENSMUST00000192302 244 ntBASIC10.82□□□□□ -0.68
Nkx3-1P97436 Ip6k2-204ENSMUST00000192307 1191 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
Nkx3-1P97436 Gm32999-201ENSMUST00000192693 562 ntBASIC10.82□□□□□ -0.68
Nkx3-1P97436 Polr2i-201ENSMUST00000019882 819 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Nkx3-1P97436 Ephb3-201ENSMUST00000006112 4185 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Nkx3-1P97436 Stx18-203ENSMUST00000114126 3002 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Nkx3-1P97436 Mylk-201ENSMUST00000023538 7824 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Nkx3-1P97436 Duox1-201ENSMUST00000099461 5267 ntAPPRIS P1 TSL 2 BASIC10.82□□□□□ -0.68
Nkx3-1P97436 Hsd3b6-202ENSMUST00000170847 1539 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Nkx3-1P97436 Atp9a-201ENSMUST00000029060 3529 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Nkx3-1P97436 Grin1-202ENSMUST00000114307 4127 ntTSL 5 BASIC10.82□□□□□ -0.68
Nkx3-1P97436 Ago1-201ENSMUST00000097888 7227 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Nkx3-1P97436 Smpd3-201ENSMUST00000067512 5148 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Nkx3-1P97436 Prkca-202ENSMUST00000100302 2265 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
Nkx3-1P97436 Hdgfl2-201ENSMUST00000002911 2264 ntAPPRIS ALT2 TSL 1 (best) BASIC10.82□□□□□ -0.68
Nkx3-1P97436 Bbs4-201ENSMUST00000026265 2518 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Nkx3-1P97436 Rpsa-201ENSMUST00000035105 1938 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Nkx3-1P97436 Actg2-201ENSMUST00000075161 1333 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Nkx3-1P97436 Samd5-201ENSMUST00000100070 6818 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Nkx3-1P97436 Fam43a-201ENSMUST00000059078 3075 ntAPPRIS P1 BASIC10.81□□□□□ -0.68
Nkx3-1P97436 Pkp1-201ENSMUST00000027667 4669 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Nkx3-1P97436 Sbsn-201ENSMUST00000080518 2221 ntAPPRIS P3 TSL 1 (best) BASIC10.81□□□□□ -0.68
Nkx3-1P97436 2610001J05Rik-203ENSMUST00000185219 1606 ntAPPRIS P1 BASIC10.81□□□□□ -0.68
Nkx3-1P97436 Kcnk16-202ENSMUST00000225596 2127 ntBASIC10.81□□□□□ -0.68
Nkx3-1P97436 Efhc1-201ENSMUST00000038447 2146 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Nkx3-1P97436 Bak1-202ENSMUST00000078691 2387 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Nkx3-1P97436 Elovl6-202ENSMUST00000197070 2275 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
Nkx3-1P97436 Igfn1-203ENSMUST00000166193 8989 ntAPPRIS P2 TSL 1 (best) BASIC10.81□□□□□ -0.68
Nkx3-1P97436 Rp2-201ENSMUST00000033372 4417 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Nkx3-1P97436 Alg14-201ENSMUST00000039442 2037 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Nkx3-1P97436 Tle6-201ENSMUST00000072020 2015 ntAPPRIS P3 TSL 1 (best) BASIC10.81□□□□□ -0.68
Nkx3-1P97436 Tom1-201ENSMUST00000078847 1769 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
Nkx3-1P97436 Limch1-204ENSMUST00000118242 5050 ntAPPRIS ALT2 TSL 5 BASIC10.81□□□□□ -0.68
Nkx3-1P97436 Dynlrb1-202ENSMUST00000109682 684 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Nkx3-1P97436 Nmb-202ENSMUST00000119428 678 ntAPPRIS ALT2 TSL 2 BASIC10.81□□□□□ -0.68
Nkx3-1P97436 Gm11331-201ENSMUST00000119764 288 ntBASIC10.81□□□□□ -0.68
Nkx3-1P97436 Gm15891-201ENSMUST00000127307 611 ntTSL 5 BASIC10.81□□□□□ -0.68
Nkx3-1P97436 Gm16251-201ENSMUST00000162649 338 ntTSL 3 BASIC10.81□□□□□ -0.68
Nkx3-1P97436 Rps28-202ENSMUST00000166693 271 ntAPPRIS P1 TSL 5 BASIC10.81□□□□□ -0.68
Retrieved 100 of 76,532 protein–RNA pairs in 58.5 ms