Protein–RNA interactions for Protein: F7BJK1

Pcdh1, Protocadherin 1 (Fragment), mousemouse

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdh1F7BJK1 Gif-201ENSMUST00000025585 1537 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Pcdh1F7BJK1 Cngb1-201ENSMUST00000093268 1512 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Pcdh1F7BJK1 Nin-204ENSMUST00000169074 6636 ntAPPRIS ALT2 TSL 1 (best) BASIC11.27□□□□□ -0.61
Pcdh1F7BJK1 Lcn5-202ENSMUST00000100312 660 ntAPPRIS ALT2 TSL 1 (best) BASIC11.27□□□□□ -0.61
Pcdh1F7BJK1 Pop7-202ENSMUST00000111035 988 ntAPPRIS P1 BASIC11.27□□□□□ -0.61
Pcdh1F7BJK1 Mapkapk5-205ENSMUST00000111786 975 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Pcdh1F7BJK1 Gm8805-201ENSMUST00000117848 313 ntBASIC11.27□□□□□ -0.61
Pcdh1F7BJK1 Gm11574-201ENSMUST00000139752 946 ntTSL 5 BASIC11.27□□□□□ -0.61
Pcdh1F7BJK1 2410080I02Rik-201ENSMUST00000142712 414 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Pcdh1F7BJK1 Gm23363-201ENSMUST00000175024 79 ntBASIC11.27□□□□□ -0.61
Pcdh1F7BJK1 Neurl3-202ENSMUST00000188666 1206 ntTSL 5 BASIC11.27□□□□□ -0.61
Pcdh1F7BJK1 Gm8099-201ENSMUST00000200510 742 ntBASIC11.27□□□□□ -0.61
Pcdh1F7BJK1 Gm34549-203ENSMUST00000208300 896 ntTSL 5 BASIC11.27□□□□□ -0.61
Pcdh1F7BJK1 Tspan3-203ENSMUST00000215906 842 ntTSL 3 BASIC11.27□□□□□ -0.61
Pcdh1F7BJK1 Gm7446-201ENSMUST00000221035 1240 ntBASIC11.27□□□□□ -0.61
Pcdh1F7BJK1 Cartpt-201ENSMUST00000022150 827 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Pcdh1F7BJK1 Cartpt-202ENSMUST00000224142 1238 ntAPPRIS P1 BASIC11.27□□□□□ -0.61
Pcdh1F7BJK1 Rgs6-222ENSMUST00000202210 3069 ntAPPRIS ALT2 TSL 5 BASIC11.27□□□□□ -0.61
Pcdh1F7BJK1 Poll-201ENSMUST00000026239 2324 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Pcdh1F7BJK1 Pcdhac1-201ENSMUST00000007584 5419 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Pcdh1F7BJK1 Ccdc89-201ENSMUST00000061391 2093 ntAPPRIS P1 BASIC11.27□□□□□ -0.61
Pcdh1F7BJK1 Samd4-202ENSMUST00000100672 4165 ntAPPRIS ALT2 TSL 1 (best) BASIC11.27□□□□□ -0.61
Pcdh1F7BJK1 Egr2-202ENSMUST00000105438 2864 ntAPPRIS ALT2 TSL 1 (best) BASIC11.27□□□□□ -0.61
Pcdh1F7BJK1 Brsk1-202ENSMUST00000120836 2867 ntTSL 5 BASIC11.27□□□□□ -0.61
Pcdh1F7BJK1 Mfsd9-201ENSMUST00000039672 3160 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Pcdh1F7BJK1 Rps7-ps2-201ENSMUST00000219719 1347 ntBASIC11.27□□□□□ -0.61
Pcdh1F7BJK1 Vsir-203ENSMUST00000105460 4843 ntAPPRIS ALT1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Pcdh1F7BJK1 Vsir-201ENSMUST00000020301 4846 ntAPPRIS P3 TSL 1 (best) BASIC11.27□□□□□ -0.61
Pcdh1F7BJK1 Ccdc154-203ENSMUST00000182621 2402 ntAPPRIS P2 TSL 5 BASIC11.27□□□□□ -0.61
Pcdh1F7BJK1 Phrf1-202ENSMUST00000122143 4864 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Pcdh1F7BJK1 Pygo1-201ENSMUST00000038489 7916 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Pcdh1F7BJK1 Ush1c-206ENSMUST00000154292 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC11.27□□□□□ -0.61
Pcdh1F7BJK1 Pcdhga11-201ENSMUST00000061279 4756 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Pcdh1F7BJK1 Gm10371-201ENSMUST00000127429 1411 ntTSL 2 BASIC11.26□□□□□ -0.61
Pcdh1F7BJK1 Gm30725-201ENSMUST00000195170 1419 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Pcdh1F7BJK1 Clec4g-201ENSMUST00000058040 1441 ntTSL 5 BASIC11.26□□□□□ -0.61
Pcdh1F7BJK1 Accs-201ENSMUST00000041593 2036 ntAPPRIS P3 TSL 1 (best) BASIC11.26□□□□□ -0.61
Pcdh1F7BJK1 Msi2-203ENSMUST00000107909 6436 ntAPPRIS ALT2 TSL 1 (best) BASIC11.26□□□□□ -0.61
Pcdh1F7BJK1 Vsx2-202ENSMUST00000169934 3249 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Pcdh1F7BJK1 Gm44260-201ENSMUST00000204946 2094 ntBASIC11.26□□□□□ -0.61
Pcdh1F7BJK1 Calu-202ENSMUST00000090481 2670 ntAPPRIS ALT1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Pcdh1F7BJK1 Mmachc-201ENSMUST00000030453 2106 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Pcdh1F7BJK1 Vwf-201ENSMUST00000100941 1807 ntTSL 5 BASIC11.26□□□□□ -0.61
Pcdh1F7BJK1 Kdm2b-202ENSMUST00000046073 5180 ntAPPRIS P2 TSL 1 (best) BASIC11.26□□□□□ -0.61
Pcdh1F7BJK1 Tspoap1-201ENSMUST00000039627 7616 ntAPPRIS P2 TSL 5 BASIC11.26□□□□□ -0.61
Pcdh1F7BJK1 Fosb-205ENSMUST00000208326 3654 ntTSL 5 BASIC11.26□□□□□ -0.61
Pcdh1F7BJK1 Maats1-201ENSMUST00000023501 2750 ntAPPRIS P2 TSL 1 (best) BASIC11.26□□□□□ -0.61
Pcdh1F7BJK1 Pik3r1-202ENSMUST00000055518 7113 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Pcdh1F7BJK1 Tsku-203ENSMUST00000165257 2514 ntAPPRIS P1 TSL 2 BASIC11.26□□□□□ -0.61
Pcdh1F7BJK1 Ighv5-17-201ENSMUST00000103459 405 ntAPPRIS P1 BASIC11.26□□□□□ -0.61
Pcdh1F7BJK1 Icam4-201ENSMUST00000001040 971 ntAPPRIS P2 TSL 1 (best) BASIC11.26□□□□□ -0.61
Pcdh1F7BJK1 Snord83b-201ENSMUST00000104546 94 ntBASIC11.26□□□□□ -0.61
Pcdh1F7BJK1 St6galnac6-209ENSMUST00000131229 1013 ntTSL 2 BASIC11.26□□□□□ -0.61
Pcdh1F7BJK1 Gm16000-201ENSMUST00000146657 447 ntTSL 2 BASIC11.26□□□□□ -0.61
Pcdh1F7BJK1 Pfdn6-204ENSMUST00000174048 560 ntAPPRIS P1 TSL 2 BASIC11.26□□□□□ -0.61
Pcdh1F7BJK1 1700072B07Rik-201ENSMUST00000191141 445 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Pcdh1F7BJK1 Dnajb6-210ENSMUST00000196528 1018 ntTSL 5 BASIC11.26□□□□□ -0.61
Pcdh1F7BJK1 Rhbdl2-201ENSMUST00000053202 1217 ntAPPRIS P1 TSL 5 BASIC11.26□□□□□ -0.61
Pcdh1F7BJK1 Gm8973-201ENSMUST00000079818 315 ntAPPRIS P1 BASIC11.26□□□□□ -0.61
Pcdh1F7BJK1 Ifitm10-202ENSMUST00000084412 1158 ntAPPRIS ALT2 TSL 1 (best) BASIC11.26□□□□□ -0.61
Pcdh1F7BJK1 Slx4ip-201ENSMUST00000028737 2556 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Pcdh1F7BJK1 4933431E20Rik-209ENSMUST00000146337 1636 ntTSL 5 BASIC11.26□□□□□ -0.61
Pcdh1F7BJK1 Mirt1-203ENSMUST00000181539 2259 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Pcdh1F7BJK1 Slc6a6-201ENSMUST00000032185 6186 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Pcdh1F7BJK1 Paip2b-201ENSMUST00000058383 3982 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Pcdh1F7BJK1 AI314180-202ENSMUST00000102889 7045 ntAPPRIS P2 TSL 1 (best) BASIC11.26□□□□□ -0.61
Pcdh1F7BJK1 Kpna1-201ENSMUST00000004054 5039 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Pcdh1F7BJK1 Gm11766-201ENSMUST00000143428 3018 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Pcdh1F7BJK1 Slc6a16-201ENSMUST00000179310 2007 ntAPPRIS ALT2 TSL 5 BASIC11.26□□□□□ -0.61
Pcdh1F7BJK1 Snrk-203ENSMUST00000120173 4758 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Pcdh1F7BJK1 Gm36266-201ENSMUST00000196660 1749 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Pcdh1F7BJK1 Snx29-203ENSMUST00000122168 2096 ntTSL 5 BASIC11.26□□□□□ -0.61
Pcdh1F7BJK1 Ctnnbl1-201ENSMUST00000029178 2442 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Pcdh1F7BJK1 Ercc2-202ENSMUST00000108460 3485 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Pcdh1F7BJK1 Misp-202ENSMUST00000169041 2497 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Pcdh1F7BJK1 Ubl5-201ENSMUST00000129414 2114 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Pcdh1F7BJK1 Gm36065-202ENSMUST00000219654 1424 ntTSL 5 BASIC11.26□□□□□ -0.61
Pcdh1F7BJK1 Ipo13-201ENSMUST00000036156 3595 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Pcdh1F7BJK1 Gm42943-201ENSMUST00000199676 3242 ntBASIC11.26□□□□□ -0.61
Pcdh1F7BJK1 Shc1-201ENSMUST00000039110 3250 ntAPPRIS P3 TSL 1 (best) BASIC11.26□□□□□ -0.61
Pcdh1F7BJK1 Camta2-202ENSMUST00000100933 4383 ntAPPRIS ALT2 TSL 5 BASIC11.26□□□□□ -0.61
Pcdh1F7BJK1 Camta2-204ENSMUST00000108545 4377 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Pcdh1F7BJK1 Camta2-206ENSMUST00000120261 4398 ntTSL 5 BASIC11.26□□□□□ -0.61
Pcdh1F7BJK1 Ggt6-201ENSMUST00000076443 1818 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Pcdh1F7BJK1 Npnt-203ENSMUST00000093971 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC11.25□□□□□ -0.61
Pcdh1F7BJK1 Psap-204ENSMUST00000177779 2657 ntAPPRIS ALT2 TSL 5 BASIC11.25□□□□□ -0.61
Pcdh1F7BJK1 Psap-205ENSMUST00000179238 2657 ntAPPRIS P3 TSL 5 BASIC11.25□□□□□ -0.61
Pcdh1F7BJK1 Rabep1-203ENSMUST00000100928 3860 ntTSL 5 BASIC11.25□□□□□ -0.61
Pcdh1F7BJK1 Rtbdn-204ENSMUST00000152378 2322 ntAPPRIS ALT2 TSL 1 (best) BASIC11.25□□□□□ -0.61
Pcdh1F7BJK1 Wdfy2-201ENSMUST00000014691 6646 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Pcdh1F7BJK1 Zfp362-202ENSMUST00000106072 2812 ntAPPRIS P1 TSL 5 BASIC11.25□□□□□ -0.61
Pcdh1F7BJK1 Krt33a-201ENSMUST00000018399 1683 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Pcdh1F7BJK1 Gm24231-201ENSMUST00000104315 133 ntBASIC11.25□□□□□ -0.61
Pcdh1F7BJK1 Cpsf4l-203ENSMUST00000106617 1123 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
Pcdh1F7BJK1 Gm6652-201ENSMUST00000186414 1070 ntBASIC11.25□□□□□ -0.61
Pcdh1F7BJK1 Gm18018-201ENSMUST00000198273 408 ntBASIC11.25□□□□□ -0.61
Pcdh1F7BJK1 0610005C13Rik-209ENSMUST00000211209 974 ntTSL 2 BASIC11.25□□□□□ -0.61
Pcdh1F7BJK1 Gm45668-201ENSMUST00000211271 493 ntBASIC11.25□□□□□ -0.61
Pcdh1F7BJK1 Apoa5-203ENSMUST00000213878 727 ntTSL 3 BASIC11.25□□□□□ -0.61
Pcdh1F7BJK1 AC124510.1-201ENSMUST00000222659 583 ntTSL 5 BASIC11.25□□□□□ -0.61
Retrieved 100 of 76,532 protein–RNA pairs in 35.7 ms