Protein–RNA interactions for Protein: Q9CWT6

Ddx28, Probable ATP-dependent RNA helicase DDX28, mousemouse

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx28Q9CWT6 Strc-201ENSMUST00000038389 5756 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Ddx28Q9CWT6 9430038I01Rik-203ENSMUST00000120340 4643 ntAPPRIS ALT2 TSL 1 (best) BASIC11.8□□□□□ -0.52
Ddx28Q9CWT6 Creld2-201ENSMUST00000024042 1364 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Ddx28Q9CWT6 Gm9025-201ENSMUST00000122415 1575 ntBASIC11.79□□□□□ -0.52
Ddx28Q9CWT6 AC113060.1-201ENSMUST00000225689 1573 ntBASIC11.79□□□□□ -0.52
Ddx28Q9CWT6 Lrrc30-201ENSMUST00000097290 1759 ntAPPRIS P1 BASIC11.79□□□□□ -0.52
Ddx28Q9CWT6 Pde6c-201ENSMUST00000025956 2586 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Ddx28Q9CWT6 Rbm10-207ENSMUST00000177738 2790 ntAPPRIS ALT2 TSL 5 BASIC11.79□□□□□ -0.52
Ddx28Q9CWT6 Rbm10-201ENSMUST00000064911 2793 ntAPPRIS P3 TSL 1 (best) BASIC11.79□□□□□ -0.52
Ddx28Q9CWT6 Ccnt1-208ENSMUST00000169707 7397 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Ddx28Q9CWT6 Arl8b-201ENSMUST00000032196 4443 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Ddx28Q9CWT6 Spata2-201ENSMUST00000057627 4012 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Ddx28Q9CWT6 2410002F23Rik-205ENSMUST00000107949 3610 ntAPPRIS P2 TSL 2 BASIC11.79□□□□□ -0.52
Ddx28Q9CWT6 Dock6-201ENSMUST00000034728 6467 ntAPPRIS ALT2 TSL 5 BASIC11.79□□□□□ -0.52
Ddx28Q9CWT6 Gm14703-201ENSMUST00000145894 1820 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Ddx28Q9CWT6 Gm1661-203ENSMUST00000165128 1837 ntAPPRIS ALT2 TSL 5 BASIC11.79□□□□□ -0.52
Ddx28Q9CWT6 Fhl2-202ENSMUST00000185893 1421 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Ddx28Q9CWT6 Clpx-201ENSMUST00000015501 2885 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Ddx28Q9CWT6 Gm13093-201ENSMUST00000126212 2485 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Ddx28Q9CWT6 Inpp4b-215ENSMUST00000217122 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC11.79□□□□□ -0.52
Ddx28Q9CWT6 Ccdc32-201ENSMUST00000036470 1870 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Ddx28Q9CWT6 Gm18983-201ENSMUST00000222884 2729 ntBASIC11.79□□□□□ -0.52
Ddx28Q9CWT6 Igsf3-201ENSMUST00000043983 7371 ntAPPRIS P2 TSL 1 (best) BASIC11.79□□□□□ -0.52
Ddx28Q9CWT6 Gm14350-201ENSMUST00000116642 640 ntBASIC11.79□□□□□ -0.52
Ddx28Q9CWT6 Gm12928-201ENSMUST00000117115 573 ntBASIC11.79□□□□□ -0.52
Ddx28Q9CWT6 Kctd18-210ENSMUST00000164963 2114 ntTSL 5 BASIC11.79□□□□□ -0.52
Ddx28Q9CWT6 Glo1-202ENSMUST00000167624 895 ntAPPRIS P1 TSL 2 BASIC11.79□□□□□ -0.52
Ddx28Q9CWT6 Gm28911-201ENSMUST00000188837 117 ntBASIC11.79□□□□□ -0.52
Ddx28Q9CWT6 Gm34086-201ENSMUST00000196486 743 ntTSL 3 BASIC11.79□□□□□ -0.52
Ddx28Q9CWT6 Zfp936-202ENSMUST00000200973 578 ntTSL 3 BASIC11.79□□□□□ -0.52
Ddx28Q9CWT6 AC135669.1-202ENSMUST00000216742 540 ntBASIC11.79□□□□□ -0.52
Ddx28Q9CWT6 Nupr1-201ENSMUST00000032961 829 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Ddx28Q9CWT6 A730061H03Rik-201ENSMUST00000066106 465 ntAPPRIS P1 BASIC11.79□□□□□ -0.52
Ddx28Q9CWT6 Gtf2i-201ENSMUST00000059042 4455 ntAPPRIS P4 TSL 1 (best) BASIC11.79□□□□□ -0.52
Ddx28Q9CWT6 Slc4a3-202ENSMUST00000124341 7182 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Ddx28Q9CWT6 Slc39a9-204ENSMUST00000217889 2155 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Ddx28Q9CWT6 Syt8-201ENSMUST00000097939 1300 ntAPPRIS ALT2 TSL 1 (best) BASIC11.79□□□□□ -0.52
Ddx28Q9CWT6 Car10-206ENSMUST00000107863 3334 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Ddx28Q9CWT6 Poc1b-203ENSMUST00000159228 1799 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Ddx28Q9CWT6 Bcar1-203ENSMUST00000212349 3116 ntAPPRIS ALT2 TSL 1 (best) BASIC11.79□□□□□ -0.52
Ddx28Q9CWT6 Drd1-202ENSMUST00000221470 3576 ntAPPRIS ALT2 TSL 1 (best) BASIC11.79□□□□□ -0.52
Ddx28Q9CWT6 Acoxl-202ENSMUST00000110344 1573 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Ddx28Q9CWT6 Slc6a18-208ENSMUST00000222029 2005 ntAPPRIS P3 TSL 1 (best) BASIC11.79□□□□□ -0.52
Ddx28Q9CWT6 Vax2os-203ENSMUST00000155159 4063 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Ddx28Q9CWT6 Vps16-201ENSMUST00000028900 3161 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Ddx28Q9CWT6 Gsdma-201ENSMUST00000017348 2726 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Ddx28Q9CWT6 Epb41l5-201ENSMUST00000027632 2523 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Ddx28Q9CWT6 Usp17le-201ENSMUST00000053464 1626 ntTSL 5 BASIC11.78□□□□□ -0.52
Ddx28Q9CWT6 Madd-207ENSMUST00000111369 5582 ntAPPRIS ALT2 TSL 5 BASIC11.78□□□□□ -0.52
Ddx28Q9CWT6 5031434O11Rik-201ENSMUST00000180404 3731 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Ddx28Q9CWT6 Ccrl2-203ENSMUST00000199839 1864 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Ddx28Q9CWT6 Bckdha-201ENSMUST00000071329 1899 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Ddx28Q9CWT6 Cldn9-201ENSMUST00000085989 1435 ntAPPRIS P1 BASIC11.78□□□□□ -0.52
Ddx28Q9CWT6 2010315B03Rik-202ENSMUST00000177714 2623 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Ddx28Q9CWT6 Trappc2l-201ENSMUST00000015157 1659 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Ddx28Q9CWT6 Gcdh-201ENSMUST00000003907 2167 ntAPPRIS P2 TSL 1 (best) BASIC11.78□□□□□ -0.52
Ddx28Q9CWT6 Prc1-206ENSMUST00000173824 2912 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Ddx28Q9CWT6 Pcdhgb5-201ENSMUST00000192535 4670 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Ddx28Q9CWT6 Abhd6-202ENSMUST00000166497 2226 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Ddx28Q9CWT6 Pank4-202ENSMUST00000070953 2706 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Ddx28Q9CWT6 Sgsm3-208ENSMUST00000139517 2996 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Ddx28Q9CWT6 BC027072-201ENSMUST00000057405 5004 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Ddx28Q9CWT6 Aebp2-206ENSMUST00000161335 2524 ntAPPRIS ALT2 TSL 1 (best) BASIC11.78□□□□□ -0.52
Ddx28Q9CWT6 Gm15544-201ENSMUST00000118776 1531 ntBASIC11.78□□□□□ -0.52
Ddx28Q9CWT6 Dctn6-202ENSMUST00000117243 962 ntTSL 3 BASIC11.78□□□□□ -0.52
Ddx28Q9CWT6 Gm12138-201ENSMUST00000122180 951 ntBASIC11.78□□□□□ -0.52
Ddx28Q9CWT6 Cd209g-201ENSMUST00000130372 1169 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Ddx28Q9CWT6 Ube2i-211ENSMUST00000173713 890 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Ddx28Q9CWT6 4930449I04Rik-201ENSMUST00000198191 1123 ntBASIC11.78□□□□□ -0.52
Ddx28Q9CWT6 Gm42929-201ENSMUST00000198374 1286 ntBASIC11.78□□□□□ -0.52
Ddx28Q9CWT6 Trmt112-ps1-201ENSMUST00000202320 375 ntBASIC11.78□□□□□ -0.52
Ddx28Q9CWT6 Gm45059-201ENSMUST00000205558 1077 ntBASIC11.78□□□□□ -0.52
Ddx28Q9CWT6 Isca2-201ENSMUST00000021667 883 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Ddx28Q9CWT6 AC159006.1-201ENSMUST00000226396 258 ntBASIC11.78□□□□□ -0.52
Ddx28Q9CWT6 Txn1-201ENSMUST00000030051 1051 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Ddx28Q9CWT6 Ndufa4l2-201ENSMUST00000035735 934 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Ddx28Q9CWT6 Msh4-201ENSMUST00000005630 3325 ntAPPRIS P3 TSL 1 (best) BASIC11.78□□□□□ -0.52
Ddx28Q9CWT6 Gm44851-201ENSMUST00000205735 2309 ntBASIC11.78□□□□□ -0.52
Ddx28Q9CWT6 Fn1-214ENSMUST00000188894 8043 ntAPPRIS ALT2 TSL 1 (best) BASIC11.78□□□□□ -0.52
Ddx28Q9CWT6 Cyyr1-201ENSMUST00000114174 5464 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Ddx28Q9CWT6 D130043K22Rik-201ENSMUST00000006893 4973 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Ddx28Q9CWT6 Plin4-202ENSMUST00000190703 5756 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Ddx28Q9CWT6 Ptgdr-201ENSMUST00000095959 3187 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Ddx28Q9CWT6 Zfp429-202ENSMUST00000181071 2117 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Ddx28Q9CWT6 Saraf-201ENSMUST00000033933 1860 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Ddx28Q9CWT6 BC017643-201ENSMUST00000038709 2417 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Ddx28Q9CWT6 Limk2-201ENSMUST00000101638 3514 ntAPPRIS P4 TSL 1 (best) BASIC11.78□□□□□ -0.52
Ddx28Q9CWT6 BC039966-201ENSMUST00000141582 1371 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Ddx28Q9CWT6 Slc6a18-210ENSMUST00000223074 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC11.78□□□□□ -0.52
Ddx28Q9CWT6 Zfp593-201ENSMUST00000030644 1994 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Ddx28Q9CWT6 Aldh3a1-202ENSMUST00000108716 1721 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
Ddx28Q9CWT6 Sh3pxd2a-202ENSMUST00000111800 10380 ntAPPRIS ALT2 TSL 1 (best) BASIC11.77□□□□□ -0.52
Ddx28Q9CWT6 Gm45643-201ENSMUST00000211364 1484 ntBASIC11.77□□□□□ -0.52
Ddx28Q9CWT6 Traf7-201ENSMUST00000070777 2384 ntTSL 5 BASIC11.77□□□□□ -0.52
Ddx28Q9CWT6 Me3-202ENSMUST00000032856 4485 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
Ddx28Q9CWT6 Trim34b-201ENSMUST00000106847 1827 ntAPPRIS P2 TSL 1 (best) BASIC11.77□□□□□ -0.52
Ddx28Q9CWT6 Stx17-201ENSMUST00000064765 1531 ntAPPRIS P1 TSL 5 BASIC11.77□□□□□ -0.52
Ddx28Q9CWT6 Wscd1-201ENSMUST00000021168 2757 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Ddx28Q9CWT6 Tmx3-201ENSMUST00000025515 4611 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Ddx28Q9CWT6 Myo7a-203ENSMUST00000107127 6806 ntAPPRIS P3 TSL 5 BASIC11.77□□□□□ -0.53
Retrieved 100 of 76,532 protein–RNA pairs in 66.8 ms