Protein–RNA interactions for Protein: Q8VC31

Ccdc9, Coiled-coil domain-containing protein 9, mousemouse

Known RBP Predictions only

Length 543 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc9Q8VC31 Ccdc33-201ENSMUST00000042205 2632 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
Ccdc9Q8VC31 Gm45187-201ENSMUST00000207697 2760 ntTSL 1 (best) BASIC15.07■□□□□ 0
Ccdc9Q8VC31 Tmsb4x-202ENSMUST00000112175 864 ntTSL 2 BASIC15.07■□□□□ 0
Ccdc9Q8VC31 Hist1h3h-201ENSMUST00000188775 411 ntAPPRIS P1 BASIC15.07■□□□□ 0
Ccdc9Q8VC31 Hist1h3i-201ENSMUST00000189457 411 ntAPPRIS P1 BASIC15.07■□□□□ 0
Ccdc9Q8VC31 Lce1g-201ENSMUST00000029527 925 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Ccdc9Q8VC31 Prkag3-201ENSMUST00000081636 2341 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Ccdc9Q8VC31 Sufu-201ENSMUST00000039922 4522 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
Ccdc9Q8VC31 Adamts10-201ENSMUST00000087623 4043 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
Ccdc9Q8VC31 Smim1-214ENSMUST00000182191 3535 ntTSL 1 (best) BASIC15.07■□□□□ 0
Ccdc9Q8VC31 Zfp46-201ENSMUST00000069195 4639 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Ccdc9Q8VC31 Mdm4-201ENSMUST00000067398 1914 ntAPPRIS ALT1 TSL 1 (best) BASIC15.07■□□□□ 0
Ccdc9Q8VC31 Lztr1-201ENSMUST00000023444 3112 ntAPPRIS P2 TSL 1 (best) BASIC15.07■□□□□ 0
Ccdc9Q8VC31 Ptbp1-202ENSMUST00000095457 2598 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
Ccdc9Q8VC31 Fbxo25-204ENSMUST00000209913 2035 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
Ccdc9Q8VC31 Jup-201ENSMUST00000001592 3205 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Ccdc9Q8VC31 Arvcf-202ENSMUST00000115610 3829 ntAPPRIS ALT2 TSL 5 BASIC15.07■□□□□ 0
Ccdc9Q8VC31 Mmel1-202ENSMUST00000080559 2926 ntAPPRIS ALT2 TSL 5 BASIC15.06■□□□□ 0
Ccdc9Q8VC31 Mthfd1l-202ENSMUST00000117291 3669 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Ccdc9Q8VC31 Rab3d-203ENSMUST00000122211 3886 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Ccdc9Q8VC31 Ctsc-201ENSMUST00000032779 2493 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Ccdc9Q8VC31 Kalrn-206ENSMUST00000114954 4677 ntTSL 1 (best) BASIC15.06■□□□□ 0
Ccdc9Q8VC31 Pltp-201ENSMUST00000059954 1809 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Ccdc9Q8VC31 4931428F04Rik-201ENSMUST00000014981 3492 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Ccdc9Q8VC31 Cog4-201ENSMUST00000034203 2737 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
Ccdc9Q8VC31 Gm6092-201ENSMUST00000121659 2029 ntBASIC15.06■□□□□ 0
Ccdc9Q8VC31 Olfr463-202ENSMUST00000215150 2031 ntAPPRIS P1 TSL 5 BASIC15.06■□□□□ 0
Ccdc9Q8VC31 Prr36-201ENSMUST00000168386 4616 ntAPPRIS P1 TSL 5 BASIC15.06■□□□□ 0
Ccdc9Q8VC31 Ggt1-208ENSMUST00000134503 2140 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Ccdc9Q8VC31 Gm15966-201ENSMUST00000136853 480 ntTSL 3 BASIC15.06■□□□□ 0
Ccdc9Q8VC31 Gm17455-201ENSMUST00000164428 855 ntAPPRIS P1 TSL 3 BASIC15.06■□□□□ 0
Ccdc9Q8VC31 Bcl2l2-204ENSMUST00000172844 498 ntTSL 5 BASIC15.06■□□□□ 0
Ccdc9Q8VC31 Wfdc2-201ENSMUST00000017867 849 ntAPPRIS P2 TSL 1 (best) BASIC15.06■□□□□ 0
Ccdc9Q8VC31 Gm8116-201ENSMUST00000182917 1201 ntBASIC15.06■□□□□ 0
Ccdc9Q8VC31 Pex1-208ENSMUST00000195894 528 ntTSL 3 BASIC15.06■□□□□ 0
Ccdc9Q8VC31 AC151286.1-201ENSMUST00000198489 145 ntBASIC15.06■□□□□ 0
Ccdc9Q8VC31 Gabra1-201ENSMUST00000020707 4688 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Ccdc9Q8VC31 Gm18049-201ENSMUST00000208909 581 ntBASIC15.06■□□□□ 0
Ccdc9Q8VC31 Gm32351-201ENSMUST00000220503 438 ntTSL 5 BASIC15.06■□□□□ 0
Ccdc9Q8VC31 Chchd1-203ENSMUST00000224633 557 ntBASIC15.06■□□□□ 0
Ccdc9Q8VC31 Gm6471-201ENSMUST00000097935 805 ntTSL 1 (best) BASIC15.06■□□□□ 0
Ccdc9Q8VC31 Triml2-203ENSMUST00000209872 1395 ntTSL 1 (best) BASIC15.06■□□□□ 0
Ccdc9Q8VC31 Tmed1-201ENSMUST00000034698 1378 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Ccdc9Q8VC31 Pck2-201ENSMUST00000048781 3400 ntTSL 1 (best) BASIC15.06■□□□□ 0
Ccdc9Q8VC31 Lpar5-203ENSMUST00000171989 1458 ntAPPRIS P1 TSL 2 BASIC15.06■□□□□ 0
Ccdc9Q8VC31 CT025626.1-201ENSMUST00000223735 1455 ntBASIC15.06■□□□□ 0
Ccdc9Q8VC31 Pisd-203ENSMUST00000120591 2491 ntAPPRIS ALT2 TSL 5 BASIC15.06■□□□□ 0
Ccdc9Q8VC31 Apol9b-201ENSMUST00000109775 1545 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Ccdc9Q8VC31 Gm35507-201ENSMUST00000197932 2761 ntTSL 1 (best) BASIC15.06■□□□□ 0
Ccdc9Q8VC31 1110051M20Rik-201ENSMUST00000064652 2896 ntAPPRIS ALT1 TSL 1 (best) BASIC15.06■□□□□ 0
Ccdc9Q8VC31 Zfp617-201ENSMUST00000119003 2920 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Ccdc9Q8VC31 Corin-207ENSMUST00000177290 2943 ntAPPRIS ALT2 TSL 5 BASIC15.06■□□□□ 0
Ccdc9Q8VC31 Cyyr1-201ENSMUST00000114174 5464 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Ccdc9Q8VC31 Pex19-201ENSMUST00000075895 1917 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
Ccdc9Q8VC31 Zmat1-202ENSMUST00000113185 3378 ntAPPRIS ALT2 TSL 5 BASIC15.05■□□□□ 0
Ccdc9Q8VC31 Nell2-202ENSMUST00000166170 3366 ntAPPRIS P1 TSL 5 BASIC15.05■□□□□ 0
Ccdc9Q8VC31 Ttc4-201ENSMUST00000026480 2121 ntAPPRIS P2 TSL 1 (best) BASIC15.05■□□□□ 0
Ccdc9Q8VC31 Unk-201ENSMUST00000021116 3735 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ 0
Ccdc9Q8VC31 Grem1-201ENSMUST00000099575 4148 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
Ccdc9Q8VC31 Stom-201ENSMUST00000028241 2787 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
Ccdc9Q8VC31 Hmbox1-202ENSMUST00000067843 2931 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ 0
Ccdc9Q8VC31 Mapk8ip3-202ENSMUST00000115228 5424 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ -0
Ccdc9Q8VC31 Flicr-201ENSMUST00000144719 3455 ntTSL 1 (best) BASIC15.05■□□□□ -0
Ccdc9Q8VC31 Dis3l-208ENSMUST00000168844 3575 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Ccdc9Q8VC31 Kcnh3-201ENSMUST00000041415 3583 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Ccdc9Q8VC31 Paxx-201ENSMUST00000114261 981 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Ccdc9Q8VC31 Med28-202ENSMUST00000118833 734 ntTSL 2 BASIC15.05■□□□□ -0
Ccdc9Q8VC31 1810032O08Rik-206ENSMUST00000144049 966 ntAPPRIS P5 TSL 2 BASIC15.05■□□□□ -0
Ccdc9Q8VC31 Gm9824-201ENSMUST00000178707 561 ntBASIC15.05■□□□□ -0
Ccdc9Q8VC31 Gm27702-201ENSMUST00000184512 56 ntBASIC15.05■□□□□ -0
Ccdc9Q8VC31 Ighv8-7-201ENSMUST00000194349 297 ntBASIC15.05■□□□□ -0
Ccdc9Q8VC31 6030443J06Rik-204ENSMUST00000195898 786 ntTSL 1 (best) BASIC15.05■□□□□ -0
Ccdc9Q8VC31 4933437G19Rik-201ENSMUST00000197910 1178 ntBASIC15.05■□□□□ -0
Ccdc9Q8VC31 Igkv2-116-201ENSMUST00000199327 362 ntBASIC15.05■□□□□ -0
Ccdc9Q8VC31 Gm43125-201ENSMUST00000201724 730 ntBASIC15.05■□□□□ -0
Ccdc9Q8VC31 5830408C22Rik-201ENSMUST00000210072 1115 ntTSL 5 BASIC15.05■□□□□ -0
Ccdc9Q8VC31 Gm45572-201ENSMUST00000211774 750 ntTSL 5 BASIC15.05■□□□□ -0
Ccdc9Q8VC31 Commd9-201ENSMUST00000028584 1191 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Ccdc9Q8VC31 Lce1b-201ENSMUST00000029531 647 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Ccdc9Q8VC31 Epc1-202ENSMUST00000050542 565 ntTSL 1 (best) BASIC15.05■□□□□ -0
Ccdc9Q8VC31 Clic4-201ENSMUST00000037099 4119 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Ccdc9Q8VC31 Gm13613-201ENSMUST00000126240 1444 ntTSL 1 (best) BASIC15.05■□□□□ -0
Ccdc9Q8VC31 Slc4a3-202ENSMUST00000124341 7182 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Ccdc9Q8VC31 Psmc3-202ENSMUST00000067663 1636 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Ccdc9Q8VC31 Ydjc-202ENSMUST00000115702 1713 ntTSL 5 BASIC15.05■□□□□ -0
Ccdc9Q8VC31 Gm5380-201ENSMUST00000119296 2136 ntBASIC15.05■□□□□ -0
Ccdc9Q8VC31 Gm2420-201ENSMUST00000119864 2149 ntBASIC15.05■□□□□ -0
Ccdc9Q8VC31 Crispld2-201ENSMUST00000034282 2898 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ -0
Ccdc9Q8VC31 Vmn1r16-203ENSMUST00000228356 3492 ntAPPRIS ALT2 BASIC15.05■□□□□ -0
Ccdc9Q8VC31 Hdac6-202ENSMUST00000115642 4069 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Ccdc9Q8VC31 Myo7a-213ENSMUST00000205746 6689 ntTSL 5 BASIC15.04■□□□□ -0
Ccdc9Q8VC31 Zeb2-201ENSMUST00000028229 5335 ntTSL 1 (best) BASIC15.04■□□□□ -0
Ccdc9Q8VC31 Epha6-201ENSMUST00000068860 3930 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Ccdc9Q8VC31 Zswim9-203ENSMUST00000119558 3111 ntAPPRIS ALT2 TSL 5 BASIC15.04■□□□□ -0
Ccdc9Q8VC31 Pou3f4-201ENSMUST00000078229 2928 ntAPPRIS P1 BASIC15.04■□□□□ -0
Ccdc9Q8VC31 Ndufa11-201ENSMUST00000002452 2661 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Ccdc9Q8VC31 Mageb4-202ENSMUST00000113969 2403 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Ccdc9Q8VC31 Mageb4-201ENSMUST00000096378 2401 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Ccdc9Q8VC31 Ints1-210ENSMUST00000200393 7070 ntAPPRIS P2 TSL 1 (best) BASIC15.04■□□□□ -0
Ccdc9Q8VC31 C730027H18Rik-201ENSMUST00000218381 2300 ntTSL 1 (best) BASIC15.04■□□□□ -0
Retrieved 100 of 76,532 protein–RNA pairs in 54.2 ms