Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Traf6-201ENSMUST00000004949 6169 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Trim56Q80VI1 Ripor3-201ENSMUST00000099073 3580 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Trim56Q80VI1 Rpl22-208ENSMUST00000188151 2048 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Trim56Q80VI1 Vrtn-201ENSMUST00000095551 3028 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Trim56Q80VI1 Ankrd34b-201ENSMUST00000061594 4013 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Trim56Q80VI1 Rcsd1-202ENSMUST00000097474 5001 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Trim56Q80VI1 Eno3-206ENSMUST00000170716 1461 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Trim56Q80VI1 Cipc-211ENSMUST00000191463 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Trim56Q80VI1 Lims1-202ENSMUST00000020078 4327 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Trim56Q80VI1 Twistnb-201ENSMUST00000020877 4325 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Trim56Q80VI1 Scarf1-201ENSMUST00000042808 2887 ntAPPRIS P2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Trim56Q80VI1 Hk1-202ENSMUST00000099691 4278 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Trim56Q80VI1 Tmcc2-206ENSMUST00000142609 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Trim56Q80VI1 Prkcd-204ENSMUST00000112206 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Trim56Q80VI1 Pbld2-201ENSMUST00000020262 2212 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Trim56Q80VI1 Xrra1-202ENSMUST00000207855 1334 ntAPPRIS ALT2 TSL 5 BASIC14.76□□□□□ -0.05
Trim56Q80VI1 Gm16339-201ENSMUST00000160954 929 ntTSL 5 BASIC14.76□□□□□ -0.05
Trim56Q80VI1 Stard10-207ENSMUST00000173270 670 ntTSL 5 BASIC14.76□□□□□ -0.05
Trim56Q80VI1 Pcbd1-201ENSMUST00000020298 789 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Trim56Q80VI1 Gm30459-201ENSMUST00000206203 1193 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
Trim56Q80VI1 Gm6082-201ENSMUST00000215204 454 ntBASIC14.76□□□□□ -0.05
Trim56Q80VI1 H2-M10.2-201ENSMUST00000023845 1113 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Trim56Q80VI1 Ctrc-201ENSMUST00000037059 951 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
Trim56Q80VI1 Cryge-201ENSMUST00000087359 631 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Trim56Q80VI1 Rita1-207ENSMUST00000177800 1668 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
Trim56Q80VI1 Plch2-207ENSMUST00000139976 5322 ntAPPRIS P3 TSL 1 (best) BASIC14.76□□□□□ -0.05
Trim56Q80VI1 Apol7c-201ENSMUST00000062562 2044 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Trim56Q80VI1 C230034O21Rik-201ENSMUST00000153659 2836 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
Trim56Q80VI1 Gm26531-201ENSMUST00000181727 1967 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
Trim56Q80VI1 Gm6015-201ENSMUST00000217493 1586 ntBASIC14.76□□□□□ -0.05
Trim56Q80VI1 Fyttd1-201ENSMUST00000023489 4312 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Trim56Q80VI1 Nxph1-201ENSMUST00000060369 2578 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Trim56Q80VI1 Steap3-204ENSMUST00000112643 2873 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
Trim56Q80VI1 Foxp1-205ENSMUST00000113324 2121 ntTSL 5 BASIC14.75□□□□□ -0.05
Trim56Q80VI1 Foxp1-207ENSMUST00000113328 2121 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
Trim56Q80VI1 Foxp1-228ENSMUST00000177307 2121 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
Trim56Q80VI1 Tmed8-201ENSMUST00000037418 7409 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Trim56Q80VI1 Urgcp-203ENSMUST00000118076 4208 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
Trim56Q80VI1 Nkain3-202ENSMUST00000119374 4567 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Trim56Q80VI1 Rnls-202ENSMUST00000163093 1378 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
Trim56Q80VI1 Bckdhb-205ENSMUST00000190166 1398 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
Trim56Q80VI1 Slc3a2-207ENSMUST00000206598 1393 ntTSL 2 BASIC14.75□□□□□ -0.05
Trim56Q80VI1 Ppp1r9b-202ENSMUST00000107748 3095 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
Trim56Q80VI1 Gm8038-201ENSMUST00000164674 2044 ntBASIC14.75□□□□□ -0.05
Trim56Q80VI1 Arhgef2-229ENSMUST00000177303 3000 ntAPPRIS ALT2 TSL 5 BASIC14.75□□□□□ -0.05
Trim56Q80VI1 Lsp1-201ENSMUST00000018963 1695 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
Trim56Q80VI1 Nrap-201ENSMUST00000040711 5334 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
Trim56Q80VI1 Tsku-207ENSMUST00000206414 2310 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Trim56Q80VI1 Tsta3-201ENSMUST00000023231 1311 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Trim56Q80VI1 Gdf10-201ENSMUST00000168727 5210 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Trim56Q80VI1 Gm37437-201ENSMUST00000194451 1937 ntBASIC14.75□□□□□ -0.05
Trim56Q80VI1 Gm11930-201ENSMUST00000117788 190 ntBASIC14.75□□□□□ -0.05
Trim56Q80VI1 Gm42420-201ENSMUST00000126621 634 ntAPPRIS P1 TSL 3 BASIC14.75□□□□□ -0.05
Trim56Q80VI1 D930030I03Rik-201ENSMUST00000180735 920 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
Trim56Q80VI1 Gm27320-201ENSMUST00000184892 109 ntBASIC14.75□□□□□ -0.05
Trim56Q80VI1 AC153937.1-201ENSMUST00000218734 412 ntBASIC14.75□□□□□ -0.05
Trim56Q80VI1 Gm18615-201ENSMUST00000222919 1031 ntBASIC14.75□□□□□ -0.05
Trim56Q80VI1 Tmem50a-201ENSMUST00000030626 1204 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Trim56Q80VI1 Isoc2b-201ENSMUST00000064547 1080 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Trim56Q80VI1 Spaca4-201ENSMUST00000094424 707 ntAPPRIS P1 BASIC14.75□□□□□ -0.05
Trim56Q80VI1 Cd37-202ENSMUST00000098461 1227 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
Trim56Q80VI1 Slc9b1-201ENSMUST00000078568 2248 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Trim56Q80VI1 Zfp369-203ENSMUST00000130799 1580 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
Trim56Q80VI1 Tssk5-201ENSMUST00000071119 1518 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Trim56Q80VI1 Nid2-201ENSMUST00000022340 4876 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Trim56Q80VI1 Tmem186-201ENSMUST00000052505 2736 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Trim56Q80VI1 Glis2-201ENSMUST00000014447 3619 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Trim56Q80VI1 Dgcr8-202ENSMUST00000115633 4522 ntAPPRIS P1 TSL 5 BASIC14.75□□□□□ -0.05
Trim56Q80VI1 AC159195.1-201ENSMUST00000225867 2086 ntBASIC14.75□□□□□ -0.05
Trim56Q80VI1 Gm13288-201ENSMUST00000094977 2850 ntAPPRIS P1 BASIC14.75□□□□□ -0.05
Trim56Q80VI1 Gm996-201ENSMUST00000114217 4881 ntAPPRIS P1 TSL 2 BASIC14.75□□□□□ -0.05
Trim56Q80VI1 Chpf2-202ENSMUST00000121863 3715 ntAPPRIS P1 TSL 5 BASIC14.75□□□□□ -0.05
Trim56Q80VI1 Arrb1-201ENSMUST00000032995 3715 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
Trim56Q80VI1 Cyb5rl-203ENSMUST00000106758 2516 ntAPPRIS P1 TSL 5 BASIC14.74□□□□□ -0.05
Trim56Q80VI1 Cybrd1-201ENSMUST00000028403 5339 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Trim56Q80VI1 Arhgef2-219ENSMUST00000176500 4492 ntAPPRIS ALT2 TSL 5 BASIC14.74□□□□□ -0.05
Trim56Q80VI1 Sntb2-203ENSMUST00000212524 9945 ntAPPRIS P2 TSL 1 (best) BASIC14.74□□□□□ -0.05
Trim56Q80VI1 Dcun1d3-201ENSMUST00000059851 5985 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Trim56Q80VI1 Zbtb20-205ENSMUST00000114695 2977 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
Trim56Q80VI1 Polrmt-201ENSMUST00000020580 3755 ntAPPRIS P2 TSL 1 (best) BASIC14.74□□□□□ -0.05
Trim56Q80VI1 Xrcc3-201ENSMUST00000021715 2422 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Trim56Q80VI1 Dagla-201ENSMUST00000039327 5634 ntAPPRIS P1 TSL 5 BASIC14.74□□□□□ -0.05
Trim56Q80VI1 Usp19-210ENSMUST00000193678 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
Trim56Q80VI1 Oxr1-203ENSMUST00000090096 4515 ntTSL 5 BASIC14.74□□□□□ -0.05
Trim56Q80VI1 Gm27194-201ENSMUST00000175753 2936 ntBASIC14.74□□□□□ -0.05
Trim56Q80VI1 Krit1-201ENSMUST00000080085 2930 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Trim56Q80VI1 Tbl1xr1-203ENSMUST00000193734 8237 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Trim56Q80VI1 H2-Ob-204ENSMUST00000173764 1319 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
Trim56Q80VI1 Nudt5-205ENSMUST00000179748 1590 ntAPPRIS P1 TSL 5 BASIC14.74□□□□□ -0.05
Trim56Q80VI1 Kdelr1-201ENSMUST00000002855 1599 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Trim56Q80VI1 Dennd5b-201ENSMUST00000111557 9831 ntAPPRIS P1 TSL 5 BASIC14.74□□□□□ -0.05
Trim56Q80VI1 Arvcf-201ENSMUST00000090103 4620 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
Trim56Q80VI1 Zfp541-202ENSMUST00000209369 4879 ntAPPRIS P2 TSL 5 BASIC14.74□□□□□ -0.05
Trim56Q80VI1 Gm12749-201ENSMUST00000122138 1159 ntBASIC14.74□□□□□ -0.05
Trim56Q80VI1 Gm13061-201ENSMUST00000137962 664 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
Trim56Q80VI1 Gm3096-201ENSMUST00000185770 364 ntBASIC14.74□□□□□ -0.05
Trim56Q80VI1 Gm29054-201ENSMUST00000187589 1185 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
Trim56Q80VI1 Gm45892-201ENSMUST00000212627 273 ntTSL 5 BASIC14.74□□□□□ -0.05
Trim56Q80VI1 Tmem205-203ENSMUST00000213698 705 ntAPPRIS P1 TSL 3 BASIC14.74□□□□□ -0.05
Trim56Q80VI1 Gm9257-201ENSMUST00000221254 232 ntBASIC14.74□□□□□ -0.05
Retrieved 100 of 76,532 protein–RNA pairs in 34.9 ms