Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Chst3-201ENSMUST00000068690 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Sh3rf1Q69ZI1 Cd276-202ENSMUST00000165365 3603 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Sh3rf1Q69ZI1 Ago1-201ENSMUST00000097888 7227 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Sh3rf1Q69ZI1 Pde6c-201ENSMUST00000025956 2586 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Sh3rf1Q69ZI1 Zmat1-202ENSMUST00000113185 3378 ntAPPRIS ALT2 TSL 5 BASIC12.73□□□□□ -0.37
Sh3rf1Q69ZI1 1300002E11Rik-202ENSMUST00000181780 1650 ntTSL 2 BASIC12.73□□□□□ -0.37
Sh3rf1Q69ZI1 Kcp-203ENSMUST00000101614 4885 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Sh3rf1Q69ZI1 Corin-201ENSMUST00000005352 4862 ntAPPRIS P3 TSL 1 (best) BASIC12.73□□□□□ -0.37
Sh3rf1Q69ZI1 Nemp1-203ENSMUST00000118728 2362 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Sh3rf1Q69ZI1 Spert-202ENSMUST00000164082 1560 ntAPPRIS ALT2 TSL 2 BASIC12.73□□□□□ -0.37
Sh3rf1Q69ZI1 Aff4-201ENSMUST00000060945 10099 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Sh3rf1Q69ZI1 Galc-201ENSMUST00000021390 3832 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Sh3rf1Q69ZI1 Kifc5c-ps-201ENSMUST00000179040 1530 ntBASIC12.73□□□□□ -0.37
Sh3rf1Q69ZI1 Syngr2-201ENSMUST00000026649 1520 ntAPPRIS P2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Sh3rf1Q69ZI1 Zfp641-201ENSMUST00000023722 4212 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Sh3rf1Q69ZI1 Aqp6-201ENSMUST00000023754 2060 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Sh3rf1Q69ZI1 Sertad2-203ENSMUST00000109586 5515 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Sh3rf1Q69ZI1 Mier1-205ENSMUST00000106858 4830 ntAPPRIS P3 TSL 1 (best) BASIC12.73□□□□□ -0.37
Sh3rf1Q69ZI1 Gm9755-201ENSMUST00000032981 1356 ntBASIC12.73□□□□□ -0.37
Sh3rf1Q69ZI1 Gm18983-201ENSMUST00000222884 2729 ntBASIC12.73□□□□□ -0.37
Sh3rf1Q69ZI1 Nkd2-201ENSMUST00000022051 4016 ntAPPRIS P3 TSL 1 (best) BASIC12.73□□□□□ -0.37
Sh3rf1Q69ZI1 2310026I22Rik-201ENSMUST00000180941 1300 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Sh3rf1Q69ZI1 Tfcp2-201ENSMUST00000009877 3250 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Sh3rf1Q69ZI1 Txn2-202ENSMUST00000100486 676 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Sh3rf1Q69ZI1 Ppih-203ENSMUST00000106318 800 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Sh3rf1Q69ZI1 6330418K02Rik-201ENSMUST00000124298 743 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Sh3rf1Q69ZI1 Gm13850-201ENSMUST00000140465 623 ntTSL 3 BASIC12.73□□□□□ -0.37
Sh3rf1Q69ZI1 Dnase2a-206ENSMUST00000145292 678 ntTSL 5 BASIC12.73□□□□□ -0.37
Sh3rf1Q69ZI1 Ccdc103-202ENSMUST00000159834 1156 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Sh3rf1Q69ZI1 Gm4271-201ENSMUST00000174444 973 ntBASIC12.73□□□□□ -0.37
Sh3rf1Q69ZI1 1600014C23Rik-201ENSMUST00000178179 518 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Sh3rf1Q69ZI1 Gm26618-201ENSMUST00000181123 497 ntTSL 2 BASIC12.73□□□□□ -0.37
Sh3rf1Q69ZI1 Gm27682-201ENSMUST00000183930 110 ntBASIC12.73□□□□□ -0.37
Sh3rf1Q69ZI1 Gm38144-201ENSMUST00000192790 465 ntBASIC12.73□□□□□ -0.37
Sh3rf1Q69ZI1 4930447A16Rik-201ENSMUST00000022897 587 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Sh3rf1Q69ZI1 S100a8-201ENSMUST00000069927 486 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Sh3rf1Q69ZI1 Gng8-201ENSMUST00000078182 910 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Sh3rf1Q69ZI1 Ppara-203ENSMUST00000109423 2519 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Sh3rf1Q69ZI1 Catsper4-201ENSMUST00000055892 1725 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Sh3rf1Q69ZI1 Tnn-202ENSMUST00000131919 3987 ntTSL 5 BASIC12.73□□□□□ -0.37
Sh3rf1Q69ZI1 4833422C13Rik-202ENSMUST00000160385 2828 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Sh3rf1Q69ZI1 Prkag2-202ENSMUST00000076306 2838 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Sh3rf1Q69ZI1 Wdr59-201ENSMUST00000034437 4896 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Sh3rf1Q69ZI1 Gm2420-201ENSMUST00000119864 2149 ntBASIC12.73□□□□□ -0.37
Sh3rf1Q69ZI1 Txndc5-203ENSMUST00000160653 2586 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Sh3rf1Q69ZI1 Eng-202ENSMUST00000113272 3021 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Sh3rf1Q69ZI1 Mon1b-202ENSMUST00000179926 3470 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Sh3rf1Q69ZI1 Olfr283-202ENSMUST00000215830 2392 ntAPPRIS P1 TSL 5 BASIC12.72□□□□□ -0.37
Sh3rf1Q69ZI1 Crtc1-201ENSMUST00000076615 5683 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Sh3rf1Q69ZI1 4931406C07Rik-203ENSMUST00000180339 2756 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Sh3rf1Q69ZI1 Urgcp-202ENSMUST00000093362 5089 ntAPPRIS P4 TSL 1 (best) BASIC12.72□□□□□ -0.37
Sh3rf1Q69ZI1 Mcm9-204ENSMUST00000219838 4132 ntTSL 5 BASIC12.72□□□□□ -0.37
Sh3rf1Q69ZI1 Dolpp1-203ENSMUST00000123202 2294 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Sh3rf1Q69ZI1 Dolpp1-201ENSMUST00000028209 2251 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Sh3rf1Q69ZI1 Arhgap39-201ENSMUST00000036176 4500 ntAPPRIS ALT2 TSL 5 BASIC12.72□□□□□ -0.37
Sh3rf1Q69ZI1 Zfp853-203ENSMUST00000212715 3133 ntAPPRIS ALT2 TSL 5 BASIC12.72□□□□□ -0.37
Sh3rf1Q69ZI1 Dysf-213ENSMUST00000203803 6590 ntTSL 5 BASIC12.72□□□□□ -0.37
Sh3rf1Q69ZI1 Herc4-208ENSMUST00000219577 3914 ntAPPRIS ALT1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Sh3rf1Q69ZI1 Pole2-201ENSMUST00000021359 1706 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Sh3rf1Q69ZI1 Ptcd3-201ENSMUST00000082094 2581 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Sh3rf1Q69ZI1 Bub1-201ENSMUST00000028858 3421 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Sh3rf1Q69ZI1 Eif4enif1-204ENSMUST00000120721 2952 ntTSL 5 BASIC12.72□□□□□ -0.37
Sh3rf1Q69ZI1 Gm15317-201ENSMUST00000129569 699 ntTSL 3 BASIC12.72□□□□□ -0.37
Sh3rf1Q69ZI1 Ecscr-204ENSMUST00000133064 1055 ntAPPRIS ALT2 TSL 2 BASIC12.72□□□□□ -0.37
Sh3rf1Q69ZI1 Cnot7-211ENSMUST00000149992 2982 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Sh3rf1Q69ZI1 Prss51-202ENSMUST00000165710 953 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Sh3rf1Q69ZI1 Gm8801-201ENSMUST00000173255 1064 ntBASIC12.72□□□□□ -0.37
Sh3rf1Q69ZI1 Dcdc2b-203ENSMUST00000179209 864 ntAPPRIS P1 TSL 5 BASIC12.72□□□□□ -0.37
Sh3rf1Q69ZI1 Exosc7-201ENSMUST00000026891 1053 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Sh3rf1Q69ZI1 Mdk-201ENSMUST00000028672 1054 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Sh3rf1Q69ZI1 Dnal4-202ENSMUST00000069877 1011 ntTSL 5 BASIC12.72□□□□□ -0.37
Sh3rf1Q69ZI1 Rpl10-202ENSMUST00000074085 855 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Sh3rf1Q69ZI1 Cenpm-202ENSMUST00000089157 1201 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Sh3rf1Q69ZI1 Gm11563-201ENSMUST00000092695 1012 ntAPPRIS P1 BASIC12.72□□□□□ -0.37
Sh3rf1Q69ZI1 Ecscr-201ENSMUST00000097618 1114 ntAPPRIS P2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Sh3rf1Q69ZI1 Lmnb2-204ENSMUST00000179022 3370 ntAPPRIS P2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Sh3rf1Q69ZI1 Rab11fip1-202ENSMUST00000054212 7965 ntAPPRIS P3 TSL 5 BASIC12.72□□□□□ -0.37
Sh3rf1Q69ZI1 Nrg1-201ENSMUST00000073884 2452 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Sh3rf1Q69ZI1 Fam83h-201ENSMUST00000060807 4502 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Sh3rf1Q69ZI1 Tas1r1-201ENSMUST00000030792 2863 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Sh3rf1Q69ZI1 Tubb2a-201ENSMUST00000056427 1610 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Sh3rf1Q69ZI1 Ppfia4-201ENSMUST00000168515 6067 ntAPPRIS P2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Sh3rf1Q69ZI1 Gm43321-201ENSMUST00000198897 2409 ntBASIC12.72□□□□□ -0.37
Sh3rf1Q69ZI1 Gm42943-201ENSMUST00000199676 3242 ntBASIC12.72□□□□□ -0.37
Sh3rf1Q69ZI1 Rapgef3-204ENSMUST00000128775 3586 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Sh3rf1Q69ZI1 4930563D23Rik-201ENSMUST00000062638 2646 ntAPPRIS P1 BASIC12.72□□□□□ -0.37
Sh3rf1Q69ZI1 Cdip1-203ENSMUST00000118703 2554 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Sh3rf1Q69ZI1 Sorcs1-205ENSMUST00000209413 4398 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Sh3rf1Q69ZI1 Ptprr-204ENSMUST00000128399 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.37
Sh3rf1Q69ZI1 C230034O21Rik-201ENSMUST00000153659 2836 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
Sh3rf1Q69ZI1 Irak2-201ENSMUST00000059286 3196 ntAPPRIS P3 TSL 1 (best) BASIC12.71□□□□□ -0.37
Sh3rf1Q69ZI1 BC003331-203ENSMUST00000097546 3174 ntAPPRIS ALT2 TSL 5 BASIC12.71□□□□□ -0.37
Sh3rf1Q69ZI1 Steap3-202ENSMUST00000112640 2752 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Sh3rf1Q69ZI1 Gm12132-201ENSMUST00000130945 1391 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
Sh3rf1Q69ZI1 Cyth3-202ENSMUST00000116456 3738 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Sh3rf1Q69ZI1 Gtf2i-203ENSMUST00000111261 4381 ntAPPRIS ALT2 TSL 5 BASIC12.71□□□□□ -0.37
Sh3rf1Q69ZI1 Ablim2-203ENSMUST00000114203 1333 ntTSL 5 BASIC12.71□□□□□ -0.37
Sh3rf1Q69ZI1 Mapt-204ENSMUST00000106992 5253 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.37
Sh3rf1Q69ZI1 Rhbdd3-203ENSMUST00000109878 1611 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Sh3rf1Q69ZI1 Prkch-201ENSMUST00000021527 3545 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Retrieved 100 of 76,532 protein–RNA pairs in 45.9 ms