Protein–RNA interactions for Protein: Q5NCC3

Trim41, E3 ubiquitin-protein ligase TRIM41, mousemouse

Predictions only

Length 630 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim41Q5NCC3 Gm14168-201ENSMUST00000144818 2197 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
Trim41Q5NCC3 Shc4-203ENSMUST00000110480 3671 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
Trim41Q5NCC3 Hlf-201ENSMUST00000004051 5642 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Trim41Q5NCC3 Sgsm3-208ENSMUST00000139517 2996 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Trim41Q5NCC3 Slc25a46-201ENSMUST00000060396 4371 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Trim41Q5NCC3 Trp63-204ENSMUST00000115305 1729 ntAPPRIS ALT1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Trim41Q5NCC3 Polr3e-202ENSMUST00000106483 3001 ntAPPRIS P3 TSL 5 BASIC21.77■■□□□ 1.08
Trim41Q5NCC3 F830115B05Rik-201ENSMUST00000197638 1894 ntBASIC21.77■■□□□ 1.08
Trim41Q5NCC3 Plcxd3-201ENSMUST00000061925 1851 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Trim41Q5NCC3 Dot1l-201ENSMUST00000105336 6808 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Trim41Q5NCC3 Fam83e-201ENSMUST00000129507 2908 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Trim41Q5NCC3 Dlg5-203ENSMUST00000090398 7851 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Trim41Q5NCC3 B3gnt3-201ENSMUST00000034260 3055 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Trim41Q5NCC3 Cdkn2aip-201ENSMUST00000038738 3464 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
Trim41Q5NCC3 Lrrfip1-202ENSMUST00000068167 2849 ntAPPRIS ALT2 TSL 5 BASIC21.77■■□□□ 1.08
Trim41Q5NCC3 Mfsd13b-205ENSMUST00000216241 1761 ntAPPRIS ALT2 TSL 5 BASIC21.77■■□□□ 1.08
Trim41Q5NCC3 Tom1-201ENSMUST00000078847 1769 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
Trim41Q5NCC3 Gm9881-201ENSMUST00000068783 3205 ntAPPRIS P1 BASIC21.77■■□□□ 1.08
Trim41Q5NCC3 Gm19680-201ENSMUST00000095050 1513 ntBASIC21.77■■□□□ 1.08
Trim41Q5NCC3 Hdac7-202ENSMUST00000088402 4223 ntAPPRIS P3 TSL 1 (best) BASIC21.77■■□□□ 1.08
Trim41Q5NCC3 Gm11569-201ENSMUST00000105057 869 ntAPPRIS P1 BASIC21.77■■□□□ 1.08
Trim41Q5NCC3 Tprkb-203ENSMUST00000113751 692 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
Trim41Q5NCC3 BC026585-202ENSMUST00000119891 1125 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
Trim41Q5NCC3 Gm13394-201ENSMUST00000121658 1000 ntBASIC21.77■■□□□ 1.08
Trim41Q5NCC3 Marcksl1-ps4-201ENSMUST00000132531 291 ntBASIC21.77■■□□□ 1.08
Trim41Q5NCC3 Vdac1-201ENSMUST00000020673 891 ntTSL 5 BASIC21.77■■□□□ 1.08
Trim41Q5NCC3 AC107638.1-201ENSMUST00000213690 1061 ntBASIC21.77■■□□□ 1.08
Trim41Q5NCC3 Gm9139-201ENSMUST00000218817 700 ntBASIC21.77■■□□□ 1.08
Trim41Q5NCC3 Elovl1-202ENSMUST00000067896 1137 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Trim41Q5NCC3 Brpf1-210ENSMUST00000204626 4381 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
Trim41Q5NCC3 Eln-201ENSMUST00000015138 3853 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Trim41Q5NCC3 Pam-201ENSMUST00000058762 4095 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
Trim41Q5NCC3 Trpv4-202ENSMUST00000112217 2436 ntTSL 5 BASIC21.77■■□□□ 1.08
Trim41Q5NCC3 Gm37795-201ENSMUST00000194216 2459 ntBASIC21.77■■□□□ 1.07
Trim41Q5NCC3 Cldn34c1-201ENSMUST00000113343 3301 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.07
Trim41Q5NCC3 Laptm5-207ENSMUST00000151698 2600 ntAPPRIS P2 TSL 1 (best) BASIC21.76■■□□□ 1.07
Trim41Q5NCC3 Ift52-201ENSMUST00000018002 2248 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Trim41Q5NCC3 Hspa12b-201ENSMUST00000099349 3413 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Trim41Q5NCC3 Prkcq-201ENSMUST00000028118 3583 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Trim41Q5NCC3 Gm15477-201ENSMUST00000140578 2130 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
Trim41Q5NCC3 Stx18-203ENSMUST00000114126 3002 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Trim41Q5NCC3 Gm16275-201ENSMUST00000147774 712 ntTSL 3 BASIC21.76■■□□□ 1.07
Trim41Q5NCC3 A430108G06Rik-201ENSMUST00000153461 1428 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
Trim41Q5NCC3 Ylpm1-207ENSMUST00000168977 4893 ntAPPRIS ALT2 TSL 5 BASIC21.76■■□□□ 1.07
Trim41Q5NCC3 Gm37666-201ENSMUST00000194110 866 ntBASIC21.76■■□□□ 1.07
Trim41Q5NCC3 Gm26953-204ENSMUST00000212526 553 ntTSL 5 BASIC21.76■■□□□ 1.07
Trim41Q5NCC3 Gm39460-201ENSMUST00000215728 1266 ntTSL 5 BASIC21.76■■□□□ 1.07
Trim41Q5NCC3 Gm17872-201ENSMUST00000222550 532 ntBASIC21.76■■□□□ 1.07
Trim41Q5NCC3 Gm10371-202ENSMUST00000228010 1081 ntBASIC21.76■■□□□ 1.07
Trim41Q5NCC3 Dcaf6-201ENSMUST00000027856 4110 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Trim41Q5NCC3 Opa1-201ENSMUST00000038867 3230 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
Trim41Q5NCC3 Rpl29-201ENSMUST00000059802 710 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Trim41Q5NCC3 Gm11938-201ENSMUST00000072306 663 ntAPPRIS P1 BASIC21.76■■□□□ 1.07
Trim41Q5NCC3 Gm17080-201ENSMUST00000087588 811 ntTSL 5 BASIC21.76■■□□□ 1.07
Trim41Q5NCC3 Ramp1-201ENSMUST00000097648 2325 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Trim41Q5NCC3 Slc6a21-206ENSMUST00000210861 2838 ntAPPRIS P1 TSL 5 BASIC21.76■■□□□ 1.07
Trim41Q5NCC3 Islr-202ENSMUST00000168864 2076 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Trim41Q5NCC3 2310007B03Rik-201ENSMUST00000043718 2299 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Trim41Q5NCC3 Fam43a-201ENSMUST00000059078 3075 ntAPPRIS P1 BASIC21.76■■□□□ 1.07
Trim41Q5NCC3 Tbkbp1-201ENSMUST00000066078 3338 ntAPPRIS ALT2 TSL 5 BASIC21.75■■□□□ 1.07
Trim41Q5NCC3 Arid4b-202ENSMUST00000110533 3020 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
Trim41Q5NCC3 Cab39-201ENSMUST00000097666 2369 ntAPPRIS P1 TSL 5 BASIC21.75■■□□□ 1.07
Trim41Q5NCC3 Ccdc85a-201ENSMUST00000042534 5332 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
Trim41Q5NCC3 Plekhb1-204ENSMUST00000107045 1919 ntAPPRIS ALT1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Trim41Q5NCC3 Cpped1-201ENSMUST00000073371 1922 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
Trim41Q5NCC3 Igf2os-203ENSMUST00000141681 4778 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
Trim41Q5NCC3 Fam110b-209ENSMUST00000171403 1754 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Trim41Q5NCC3 Fbxo41-201ENSMUST00000159062 6505 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Trim41Q5NCC3 Gm12036-201ENSMUST00000120008 530 ntBASIC21.75■■□□□ 1.07
Trim41Q5NCC3 AC025913.2-202ENSMUST00000219248 605 ntTSL 5 BASIC21.75■■□□□ 1.07
Trim41Q5NCC3 Prss51-201ENSMUST00000063785 961 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
Trim41Q5NCC3 Gm9996-201ENSMUST00000070359 913 ntBASIC21.75■■□□□ 1.07
Trim41Q5NCC3 Gm5513-201ENSMUST00000072982 1218 ntBASIC21.75■■□□□ 1.07
Trim41Q5NCC3 Vmn1r197-201ENSMUST00000091734 897 ntAPPRIS P1 BASIC21.75■■□□□ 1.07
Trim41Q5NCC3 Gtpbp1-201ENSMUST00000046463 3398 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Trim41Q5NCC3 Olfm2-201ENSMUST00000034692 1836 ntAPPRIS P2 TSL 1 (best) BASIC21.75■■□□□ 1.07
Trim41Q5NCC3 Sv2c-203ENSMUST00000182289 2197 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
Trim41Q5NCC3 Ypel4-201ENSMUST00000090729 1676 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Trim41Q5NCC3 Gabpb1-202ENSMUST00000089745 3254 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
Trim41Q5NCC3 E230029C05Rik-202ENSMUST00000207458 2445 ntTSL 5 BASIC21.75■■□□□ 1.07
Trim41Q5NCC3 Clcn4-203ENSMUST00000210061 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
Trim41Q5NCC3 Tmem215-202ENSMUST00000179526 2276 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Trim41Q5NCC3 Ly9-202ENSMUST00000068878 2488 ntAPPRIS P3 TSL 1 (best) BASIC21.74■■□□□ 1.07
Trim41Q5NCC3 Lin54-201ENSMUST00000046154 4451 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Trim41Q5NCC3 Gm14963-201ENSMUST00000146751 2558 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
Trim41Q5NCC3 Abo-202ENSMUST00000114045 1811 ntAPPRIS ALT2 TSL 5 BASIC21.74■■□□□ 1.07
Trim41Q5NCC3 Pkm-202ENSMUST00000163694 2041 ntAPPRIS ALT1 TSL 5 BASIC21.74■■□□□ 1.07
Trim41Q5NCC3 Serf2-202ENSMUST00000110615 876 ntTSL 2 BASIC21.74■■□□□ 1.07
Trim41Q5NCC3 Gm5638-201ENSMUST00000118618 1258 ntBASIC21.74■■□□□ 1.07
Trim41Q5NCC3 Vmn1r207-ps-201ENSMUST00000119931 1073 ntBASIC21.74■■□□□ 1.07
Trim41Q5NCC3 Gm16271-201ENSMUST00000162837 220 ntTSL 5 BASIC21.74■■□□□ 1.07
Trim41Q5NCC3 6530401F13Rik-201ENSMUST00000166971 1090 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
Trim41Q5NCC3 Chtf8-203ENSMUST00000176090 615 ntTSL 5 BASIC21.74■■□□□ 1.07
Trim41Q5NCC3 Gm43377-201ENSMUST00000201640 455 ntBASIC21.74■■□□□ 1.07
Trim41Q5NCC3 Mlana-201ENSMUST00000025719 623 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Trim41Q5NCC3 4930564D02Rik-201ENSMUST00000070584 737 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Trim41Q5NCC3 Zfp853-202ENSMUST00000212355 2871 ntAPPRIS P5 TSL 5 BASIC21.74■■□□□ 1.07
Trim41Q5NCC3 Pfkl-201ENSMUST00000020522 3730 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Trim41Q5NCC3 Wdr45-204ENSMUST00000115689 1568 ntAPPRIS P2 TSL 1 (best) BASIC21.74■■□□□ 1.07
Trim41Q5NCC3 Hif1a-201ENSMUST00000021530 4724 ntAPPRIS P3 TSL 1 (best) BASIC21.74■■□□□ 1.07
Retrieved 100 of 76,532 protein–RNA pairs in 41 ms