Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Gm12795-201ENSMUST00000117594 539 ntBASIC10.72□□□□□ -0.69
Col8a1Q00780 Gm13736-201ENSMUST00000119272 253 ntBASIC10.72□□□□□ -0.69
Col8a1Q00780 Gm11434-201ENSMUST00000122379 629 ntBASIC10.72□□□□□ -0.69
Col8a1Q00780 Gm12130-201ENSMUST00000133599 639 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
Col8a1Q00780 4930538E20Rik-202ENSMUST00000146717 497 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
Col8a1Q00780 Gm24845-201ENSMUST00000158034 109 ntBASIC10.72□□□□□ -0.69
Col8a1Q00780 Gm17028-201ENSMUST00000170026 704 ntTSL 3 BASIC10.72□□□□□ -0.69
Col8a1Q00780 4833427G06Rik-201ENSMUST00000170947 973 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Col8a1Q00780 Malat1-204ENSMUST00000173523 656 ntTSL 3 BASIC10.72□□□□□ -0.69
Col8a1Q00780 Ank3-234ENSMUST00000182993 1233 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
Col8a1Q00780 Stpg4-202ENSMUST00000186211 591 ntAPPRIS ALT2 TSL 2 BASIC10.72□□□□□ -0.69
Col8a1Q00780 Gm21976-204ENSMUST00000186911 528 ntTSL 5 BASIC10.72□□□□□ -0.69
Col8a1Q00780 Gm32999-201ENSMUST00000192693 562 ntBASIC10.72□□□□□ -0.69
Col8a1Q00780 Brsk1-205ENSMUST00000206024 1216 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
Col8a1Q00780 Cbx3-ps8-201ENSMUST00000214564 548 ntBASIC10.72□□□□□ -0.69
Col8a1Q00780 Gm18041-201ENSMUST00000218210 618 ntBASIC10.72□□□□□ -0.69
Col8a1Q00780 AC025913.2-202ENSMUST00000219248 605 ntTSL 5 BASIC10.72□□□□□ -0.69
Col8a1Q00780 Cct2-206ENSMUST00000219573 637 ntTSL 3 BASIC10.72□□□□□ -0.69
Col8a1Q00780 Tnfrsf19-203ENSMUST00000224371 1239 ntAPPRIS ALT2 BASIC10.72□□□□□ -0.69
Col8a1Q00780 Ldlrad3-201ENSMUST00000058790 3833 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Col8a1Q00780 S100a1-201ENSMUST00000060738 677 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Col8a1Q00780 Ccdc28a-202ENSMUST00000080860 1190 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Col8a1Q00780 Brd3-202ENSMUST00000077737 5272 ntAPPRIS P3 TSL 1 (best) BASIC10.72□□□□□ -0.69
Col8a1Q00780 Gm13187-202ENSMUST00000133873 1321 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
Col8a1Q00780 Grip1-212ENSMUST00000147356 4145 ntAPPRIS ALT2 TSL 1 (best) BASIC10.72□□□□□ -0.69
Col8a1Q00780 Sqle-201ENSMUST00000022977 2758 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Col8a1Q00780 Gdf9-201ENSMUST00000018382 1793 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Col8a1Q00780 Gsdmd-201ENSMUST00000023238 1776 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Col8a1Q00780 4933417C20Rik-201ENSMUST00000193962 1874 ntBASIC10.72□□□□□ -0.69
Col8a1Q00780 Kdm2a-201ENSMUST00000047898 8578 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Col8a1Q00780 Ano6-201ENSMUST00000071874 4927 ntAPPRIS P2 TSL 1 (best) BASIC10.72□□□□□ -0.69
Col8a1Q00780 Scin-202ENSMUST00000078481 2654 ntTSL 1 (best) BASIC10.71□□□□□ -0.69
Col8a1Q00780 Pbx3-202ENSMUST00000113132 2734 ntAPPRIS ALT2 TSL 1 (best) BASIC10.71□□□□□ -0.69
Col8a1Q00780 Kcna5-201ENSMUST00000060972 2862 ntAPPRIS P1 BASIC10.71□□□□□ -0.69
Col8a1Q00780 Gm23949-201ENSMUST00000104027 127 ntBASIC10.71□□□□□ -0.69
Col8a1Q00780 Gm13124-201ENSMUST00000105748 1221 ntAPPRIS P1 TSL 5 BASIC10.71□□□□□ -0.69
Col8a1Q00780 Inca1-202ENSMUST00000108541 1150 ntAPPRIS P3 TSL 1 (best) BASIC10.71□□□□□ -0.69
Col8a1Q00780 Eif5a-206ENSMUST00000108609 849 ntAPPRIS P1 TSL 3 BASIC10.71□□□□□ -0.69
Col8a1Q00780 Slc8b1-204ENSMUST00000111890 2775 ntTSL 1 (best) BASIC10.71□□□□□ -0.69
Col8a1Q00780 Apoo-202ENSMUST00000113896 1032 ntTSL 1 (best) BASIC10.71□□□□□ -0.69
Col8a1Q00780 Abo-202ENSMUST00000114045 1811 ntAPPRIS ALT2 TSL 5 BASIC10.71□□□□□ -0.69
Col8a1Q00780 Gpsm1-204ENSMUST00000114134 2043 ntTSL 3 BASIC10.71□□□□□ -0.69
Col8a1Q00780 Pfkfb3-205ENSMUST00000114845 1971 ntTSL 5 BASIC10.71□□□□□ -0.69
Col8a1Q00780 Chchd3-202ENSMUST00000115091 1363 ntTSL 1 (best) BASIC10.71□□□□□ -0.69
Col8a1Q00780 Inca1-205ENSMUST00000126114 1189 ntAPPRIS P3 TSL 1 (best) BASIC10.71□□□□□ -0.69
Col8a1Q00780 Prickle3-203ENSMUST00000129662 2376 ntAPPRIS ALT2 TSL 2 BASIC10.71□□□□□ -0.69
Col8a1Q00780 Fbxl12-203ENSMUST00000131128 4182 ntTSL 1 (best) BASIC10.71□□□□□ -0.69
Col8a1Q00780 Gm15972-201ENSMUST00000132571 418 ntTSL 2 BASIC10.71□□□□□ -0.69
Col8a1Q00780 Myef2-207ENSMUST00000147105 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC10.71□□□□□ -0.69
Col8a1Q00780 Pianp-206ENSMUST00000162000 2396 ntAPPRIS ALT2 TSL 5 BASIC10.71□□□□□ -0.69
Col8a1Q00780 Ube2a-201ENSMUST00000016452 1732 ntAPPRIS P3 TSL 1 (best) BASIC10.71□□□□□ -0.69
Col8a1Q00780 Gnb1l-211ENSMUST00000167778 3569 ntAPPRIS P3 TSL 1 (best) BASIC10.71□□□□□ -0.69
Col8a1Q00780 Stard10-207ENSMUST00000173270 670 ntTSL 5 BASIC10.71□□□□□ -0.69
Col8a1Q00780 D930019O06Rik-201ENSMUST00000181841 3663 ntTSL 1 (best) BASIC10.71□□□□□ -0.69
Col8a1Q00780 Nr1h2-ps-201ENSMUST00000183844 478 ntBASIC10.71□□□□□ -0.69
Col8a1Q00780 Gsdmcl-ps-203ENSMUST00000188367 1375 ntBASIC10.71□□□□□ -0.69
Col8a1Q00780 Gm37165-201ENSMUST00000193815 1463 ntTSL 1 (best) BASIC10.71□□□□□ -0.69
Col8a1Q00780 Gm38297-201ENSMUST00000195122 1057 ntBASIC10.71□□□□□ -0.69
Col8a1Q00780 Ccdc12-201ENSMUST00000019803 834 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
Col8a1Q00780 S100a3-204ENSMUST00000200290 509 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
Col8a1Q00780 Slc3a2-207ENSMUST00000206598 1393 ntTSL 2 BASIC10.71□□□□□ -0.69
Col8a1Q00780 Parp16-202ENSMUST00000213396 2518 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
Col8a1Q00780 Gm3898-202ENSMUST00000216905 328 ntTSL 2 BASIC10.71□□□□□ -0.69
Col8a1Q00780 CT030637.1-201ENSMUST00000228016 669 ntBASIC10.71□□□□□ -0.69
Col8a1Q00780 Grm2-201ENSMUST00000023959 4711 ntAPPRIS P1 TSL 5 BASIC10.71□□□□□ -0.69
Col8a1Q00780 Tulp2-201ENSMUST00000024233 1749 ntAPPRIS P5 TSL 1 (best) BASIC10.71□□□□□ -0.69
Col8a1Q00780 Rassf5-201ENSMUST00000027688 3485 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
Col8a1Q00780 Rgs16-201ENSMUST00000027748 2339 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
Col8a1Q00780 Daw1-201ENSMUST00000065403 1651 ntAPPRIS P1 TSL 5 BASIC10.71□□□□□ -0.69
Col8a1Q00780 4930564D02Rik-201ENSMUST00000070584 737 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
Col8a1Q00780 Wfdc21-201ENSMUST00000070832 434 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
Col8a1Q00780 Inca1-201ENSMUST00000073625 1218 ntAPPRIS P3 TSL 1 (best) BASIC10.71□□□□□ -0.69
Col8a1Q00780 Tars2-202ENSMUST00000074339 2313 ntAPPRIS ALT2 TSL 1 (best) BASIC10.71□□□□□ -0.69
Col8a1Q00780 Gm10131-201ENSMUST00000080152 736 ntAPPRIS P1 BASIC10.71□□□□□ -0.69
Col8a1Q00780 Olfr76-201ENSMUST00000087822 1048 ntAPPRIS P1 BASIC10.71□□□□□ -0.69
Col8a1Q00780 Mta2-201ENSMUST00000096240 3135 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
Col8a1Q00780 Ncf4-201ENSMUST00000096357 1464 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
Col8a1Q00780 Ddx46-202ENSMUST00000172272 5676 ntAPPRIS P2 TSL 5 BASIC10.71□□□□□ -0.7
Col8a1Q00780 Ddx46-201ENSMUST00000099479 5664 ntAPPRIS ALT2 TSL 5 BASIC10.71□□□□□ -0.7
Col8a1Q00780 Arhgef2-201ENSMUST00000029694 4300 ntAPPRIS P3 TSL 1 (best) BASIC10.71□□□□□ -0.7
Col8a1Q00780 Ankrd34b-201ENSMUST00000061594 4013 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.7
Col8a1Q00780 Zscan29-205ENSMUST00000163766 3611 ntAPPRIS ALT2 TSL 5 BASIC10.71□□□□□ -0.7
Col8a1Q00780 Ptbp2-201ENSMUST00000029780 3364 ntAPPRIS P3 TSL 1 (best) BASIC10.71□□□□□ -0.7
Col8a1Q00780 Twf1-201ENSMUST00000023087 3025 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.7
Col8a1Q00780 Desi1-206ENSMUST00000152227 2934 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.7
Col8a1Q00780 Slc52a3-204ENSMUST00000109861 2590 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.7
Col8a1Q00780 Mid1-215ENSMUST00000171433 2546 ntAPPRIS P1 TSL 5 BASIC10.71□□□□□ -0.7
Col8a1Q00780 Agrn-201ENSMUST00000071248 4831 ntTSL 5 BASIC10.7□□□□□ -0.7
Col8a1Q00780 Rad17-202ENSMUST00000177848 2392 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
Col8a1Q00780 Mansc1-201ENSMUST00000047443 2376 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
Col8a1Q00780 Esm1-201ENSMUST00000038144 2097 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
Col8a1Q00780 Gm43796-201ENSMUST00000202853 2012 ntAPPRIS P1 TSL 5 BASIC10.7□□□□□ -0.7
Col8a1Q00780 Ormdl1-201ENSMUST00000027266 1910 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
Col8a1Q00780 Ces1h-201ENSMUST00000145041 1870 ntAPPRIS P1 TSL 5 BASIC10.7□□□□□ -0.7
Col8a1Q00780 Cacna1b-203ENSMUST00000100348 7182 ntAPPRIS ALT2 TSL 5 BASIC10.7□□□□□ -0.7
Col8a1Q00780 Map10-201ENSMUST00000053078 3542 ntAPPRIS P1 BASIC10.7□□□□□ -0.7
Col8a1Q00780 Hmox2-201ENSMUST00000004172 1730 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
Col8a1Q00780 Rtn3-203ENSMUST00000088169 1709 ntTSL 5 BASIC10.7□□□□□ -0.7
Col8a1Q00780 Kcnb1-204ENSMUST00000207917 11153 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
Col8a1Q00780 Art3-201ENSMUST00000113083 1561 ntAPPRIS P3 TSL 5 BASIC10.7□□□□□ -0.7
Retrieved 100 of 76,532 protein–RNA pairs in 44.4 ms