Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Gm28215-201ENSMUST00000186146 346 ntTSL 5 BASIC18.95■□□□□ 0.62
Cux1P53564 Gm28388-201ENSMUST00000186262 437 ntBASIC18.95■□□□□ 0.62
Cux1P53564 Ighv5-11-201ENSMUST00000193354 371 ntBASIC18.95■□□□□ 0.62
Cux1P53564 Gm37299-201ENSMUST00000193951 826 ntBASIC18.95■□□□□ 0.62
Cux1P53564 Fxyd4-203ENSMUST00000203082 815 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Cux1P53564 Phxr2-201ENSMUST00000060761 1159 ntAPPRIS P1 BASIC18.95■□□□□ 0.62
Cux1P53564 Hmgb1-202ENSMUST00000093196 1092 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Cux1P53564 Vps37a-201ENSMUST00000098817 6379 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Cux1P53564 Slco3a1-203ENSMUST00000107453 3793 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
Cux1P53564 Arap1-204ENSMUST00000107010 5147 ntAPPRIS P2 TSL 1 (best) BASIC18.95■□□□□ 0.62
Cux1P53564 Nfkb1-201ENSMUST00000029812 4117 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Cux1P53564 Gm14243-201ENSMUST00000131401 2172 ntTSL 2 BASIC18.95■□□□□ 0.62
Cux1P53564 Enox1-201ENSMUST00000022589 3142 ntAPPRIS P2 TSL 1 (best) BASIC18.95■□□□□ 0.62
Cux1P53564 Fancc-218ENSMUST00000220684 2006 ntTSL 5 BASIC18.95■□□□□ 0.62
Cux1P53564 Arhgef37-201ENSMUST00000171629 3234 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
Cux1P53564 1700034H15Rik-202ENSMUST00000139827 4354 ntTSL 5 BASIC18.95■□□□□ 0.62
Cux1P53564 Tmprss11d-202ENSMUST00000122377 2256 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
Cux1P53564 Npnt-203ENSMUST00000093971 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
Cux1P53564 Picalm-213ENSMUST00000208742 3361 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
Cux1P53564 Vps52-201ENSMUST00000025178 3332 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Cux1P53564 Eml3-201ENSMUST00000096241 3322 ntAPPRIS P2 TSL 1 (best) BASIC18.95■□□□□ 0.62
Cux1P53564 Aebp2-206ENSMUST00000161335 2524 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
Cux1P53564 Myo3b-202ENSMUST00000112241 1319 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
Cux1P53564 Scyl2-201ENSMUST00000092227 3566 ntAPPRIS ALT1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Cux1P53564 Sema6c-201ENSMUST00000090821 3933 ntAPPRIS P3 TSL 5 BASIC18.95■□□□□ 0.62
Cux1P53564 Mlh1-201ENSMUST00000035079 2754 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Cux1P53564 Gm25076-201ENSMUST00000104098 132 ntBASIC18.95■□□□□ 0.62
Cux1P53564 Gm15725-201ENSMUST00000119947 1090 ntBASIC18.95■□□□□ 0.62
Cux1P53564 Rpl19-ps1-201ENSMUST00000121059 591 ntBASIC18.95■□□□□ 0.62
Cux1P53564 Siglech-205ENSMUST00000165045 1062 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
Cux1P53564 Apoe-210ENSMUST00000174710 514 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
Cux1P53564 Gm23045-201ENSMUST00000175041 96 ntBASIC18.95■□□□□ 0.62
Cux1P53564 Gm26838-201ENSMUST00000180485 911 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
Cux1P53564 Gm34821-201ENSMUST00000208399 1031 ntTSL 5 BASIC18.95■□□□□ 0.62
Cux1P53564 Cmtm2a-201ENSMUST00000034344 1081 ntAPPRIS P2 TSL 1 (best) BASIC18.95■□□□□ 0.62
Cux1P53564 Smo-201ENSMUST00000001812 3779 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Cux1P53564 Rubcn-204ENSMUST00000119810 3371 ntAPPRIS ALT2 TSL 5 BASIC18.94■□□□□ 0.62
Cux1P53564 Cblb-204ENSMUST00000227062 3728 ntAPPRIS P2 BASIC18.94■□□□□ 0.62
Cux1P53564 Olfr156-203ENSMUST00000214843 1559 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
Cux1P53564 Bag4-201ENSMUST00000038498 4876 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Cux1P53564 Tmem41b-201ENSMUST00000094097 3840 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Cux1P53564 Gm37165-201ENSMUST00000193815 1463 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
Cux1P53564 Kcnk6-201ENSMUST00000085818 4084 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Cux1P53564 Dubr-204ENSMUST00000186944 2052 ntTSL 2 BASIC18.94■□□□□ 0.62
Cux1P53564 Chst11-201ENSMUST00000040110 5527 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Cux1P53564 Msl2-201ENSMUST00000085177 4889 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Cux1P53564 Pde5a-204ENSMUST00000200389 7603 ntAPPRIS ALT2 TSL 5 BASIC18.94■□□□□ 0.62
Cux1P53564 F630040K05Rik-202ENSMUST00000180558 2633 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
Cux1P53564 E130317F20Rik-202ENSMUST00000217802 3420 ntBASIC18.94■□□□□ 0.62
Cux1P53564 Ddx10-201ENSMUST00000065630 3128 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Cux1P53564 Prpf40a-206ENSMUST00000209364 2833 ntAPPRIS ALT2 TSL 5 BASIC18.94■□□□□ 0.62
Cux1P53564 Pltp-202ENSMUST00000109316 2226 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Cux1P53564 Lctl-201ENSMUST00000034969 2171 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Cux1P53564 Ltbp4-203ENSMUST00000118583 4726 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
Cux1P53564 Sympk-201ENSMUST00000023882 4116 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Cux1P53564 Gm11451-201ENSMUST00000118946 630 ntBASIC18.94■□□□□ 0.62
Cux1P53564 Gm20662-201ENSMUST00000176356 601 ntAPPRIS P5 TSL 3 BASIC18.94■□□□□ 0.62
Cux1P53564 Ccl19-ps3-201ENSMUST00000179634 324 ntBASIC18.94■□□□□ 0.62
Cux1P53564 Gm12407-201ENSMUST00000180219 324 ntBASIC18.94■□□□□ 0.62
Cux1P53564 Gm19705-203ENSMUST00000181491 678 ntTSL 5 BASIC18.94■□□□□ 0.62
Cux1P53564 4930413E15Rik-201ENSMUST00000202500 1290 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
Cux1P53564 Tff1-201ENSMUST00000024831 478 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Cux1P53564 Rpl15-201ENSMUST00000079419 883 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
Cux1P53564 Lyz1-201ENSMUST00000092162 1263 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Cux1P53564 Atp9a-201ENSMUST00000029060 3529 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Cux1P53564 Pcdha4-202ENSMUST00000192512 5363 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Cux1P53564 Myo1c-204ENSMUST00000108431 4718 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
Cux1P53564 Capn3-201ENSMUST00000028748 2606 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Cux1P53564 Irf1-203ENSMUST00000108922 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
Cux1P53564 Gm44942-201ENSMUST00000096093 2072 ntBASIC18.93■□□□□ 0.62
Cux1P53564 Iars2-201ENSMUST00000027921 5471 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Cux1P53564 Arid4b-202ENSMUST00000110533 3020 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Cux1P53564 Tigd2-201ENSMUST00000062626 3007 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Cux1P53564 Gm28496-202ENSMUST00000137742 2752 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Cux1P53564 Ror2-201ENSMUST00000021918 3985 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
Cux1P53564 Nfe2l1-201ENSMUST00000081775 4654 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
Cux1P53564 Psmc2-201ENSMUST00000030769 1785 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Cux1P53564 Ccdc163-202ENSMUST00000106462 1112 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
Cux1P53564 2900011O08Rik-202ENSMUST00000118412 954 ntTSL 3 BASIC18.93■□□□□ 0.62
Cux1P53564 Dmrtc1a-204ENSMUST00000121197 1067 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
Cux1P53564 Rbm18-202ENSMUST00000122456 781 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Cux1P53564 Coa3-202ENSMUST00000168089 291 ntTSL 3 BASIC18.93■□□□□ 0.62
Cux1P53564 Gm6407-201ENSMUST00000176468 549 ntBASIC18.93■□□□□ 0.62
Cux1P53564 AC134860.1-201ENSMUST00000224867 660 ntBASIC18.93■□□□□ 0.62
Cux1P53564 AC099645.1-201ENSMUST00000226476 1105 ntBASIC18.93■□□□□ 0.62
Cux1P53564 Mcee-201ENSMUST00000037205 828 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Cux1P53564 Sprr2a2-202ENSMUST00000090871 722 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Cux1P53564 Pear1-205ENSMUST00000172621 4490 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Cux1P53564 Abr-205ENSMUST00000108408 3534 ntTSL 5 BASIC18.93■□□□□ 0.62
Cux1P53564 Tmem163-205ENSMUST00000185560 3488 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Cux1P53564 Fam53b-203ENSMUST00000097999 5465 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Cux1P53564 Vangl2-201ENSMUST00000027837 5698 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Cux1P53564 Ctnnb1-214ENSMUST00000178812 2702 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Cux1P53564 Fgfr2-207ENSMUST00000117872 4223 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
Cux1P53564 BC030500-201ENSMUST00000062978 1605 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Cux1P53564 Ednrb-203ENSMUST00000227824 2669 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
Cux1P53564 Leprot-202ENSMUST00000106927 1754 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Cux1P53564 Dab1-203ENSMUST00000106830 5278 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Cux1P53564 Inpp4b-215ENSMUST00000217122 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
Cux1P53564 N4bp2l1-201ENSMUST00000016279 1905 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Retrieved 100 of 76,532 protein–RNA pairs in 38.1 ms