Protein–RNA interactions for Protein: P49135

Ercc3, General transcription and DNA repair factor IIH helicase subunit XPB, mousemouse

Predictions only

Length 783 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ercc3P49135 CT033793.1-201ENSMUST00000216883 565 ntTSL 5 BASIC14.9□□□□□ -0.02
Ercc3P49135 Gm36634-201ENSMUST00000218356 1259 ntTSL 3 BASIC14.9□□□□□ -0.02
Ercc3P49135 Gm17383-201ENSMUST00000078739 1041 ntBASIC14.9□□□□□ -0.02
Ercc3P49135 Mirlet7c-2-201ENSMUST00000083674 95 ntBASIC14.9□□□□□ -0.02
Ercc3P49135 Fam83h-201ENSMUST00000060807 4502 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Ercc3P49135 Ptpn7-203ENSMUST00000187985 1990 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
Ercc3P49135 Chrd-201ENSMUST00000007171 3275 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Ercc3P49135 Ptgr2-208ENSMUST00000147363 1869 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Ercc3P49135 Bcas3-201ENSMUST00000074875 2814 ntAPPRIS P3 TSL 5 BASIC14.9□□□□□ -0.02
Ercc3P49135 Npc1-201ENSMUST00000025279 5224 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Ercc3P49135 Nek3-201ENSMUST00000033865 2021 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
Ercc3P49135 Gm16564-201ENSMUST00000162545 3010 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Ercc3P49135 Trim9-209ENSMUST00000222316 3049 ntTSL 2 BASIC14.9□□□□□ -0.02
Ercc3P49135 Ptch2-201ENSMUST00000030443 4382 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Ercc3P49135 Mat2b-202ENSMUST00000101347 2053 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Ercc3P49135 Nsd3-208ENSMUST00000146919 3652 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Ercc3P49135 Med8-204ENSMUST00000106384 1743 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Ercc3P49135 Kcnj3-201ENSMUST00000067101 5215 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Ercc3P49135 Gimap3-202ENSMUST00000204036 2145 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Ercc3P49135 Dhx37-201ENSMUST00000169485 4760 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Ercc3P49135 Pphln1-203ENSMUST00000109256 3759 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Ercc3P49135 Gm13297-201ENSMUST00000120205 934 ntBASIC14.89□□□□□ -0.03
Ercc3P49135 Cox6c-203ENSMUST00000153512 738 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
Ercc3P49135 Gm5637-201ENSMUST00000153890 1119 ntBASIC14.89□□□□□ -0.03
Ercc3P49135 Gm16302-201ENSMUST00000159268 428 ntTSL 3 BASIC14.89□□□□□ -0.03
Ercc3P49135 Gm17344-201ENSMUST00000171173 1159 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Ercc3P49135 Gm44405-201ENSMUST00000198952 126 ntBASIC14.89□□□□□ -0.03
Ercc3P49135 Gm43755-201ENSMUST00000200001 408 ntTSL 5 BASIC14.89□□□□□ -0.03
Ercc3P49135 Gm45865-201ENSMUST00000211815 945 ntBASIC14.89□□□□□ -0.03
Ercc3P49135 Gm7046-201ENSMUST00000221351 977 ntBASIC14.89□□□□□ -0.03
Ercc3P49135 Cryba4-201ENSMUST00000086629 746 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Ercc3P49135 Lrrc57-203ENSMUST00000102498 1901 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
Ercc3P49135 Cstf3-201ENSMUST00000028599 2817 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Ercc3P49135 Arhgef39-201ENSMUST00000054538 1659 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Ercc3P49135 Jmjd8-201ENSMUST00000026832 2091 ntAPPRIS P2 TSL 1 (best) BASIC14.89□□□□□ -0.03
Ercc3P49135 Hnrnpk-232ENSMUST00000225674 2704 ntBASIC14.89□□□□□ -0.03
Ercc3P49135 Ncald-211ENSMUST00000168992 3538 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
Ercc3P49135 Dab2ip-206ENSMUST00000112987 6287 ntAPPRIS ALT2 TSL 5 BASIC14.89□□□□□ -0.03
Ercc3P49135 Dmtn-208ENSMUST00000228009 2643 ntAPPRIS P2 BASIC14.89□□□□□ -0.03
Ercc3P49135 Fam160a2-201ENSMUST00000048079 3443 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
Ercc3P49135 Hnf1b-202ENSMUST00000108113 2376 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Ercc3P49135 Dll1-201ENSMUST00000014917 3581 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Ercc3P49135 Irf1-202ENSMUST00000108920 2137 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
Ercc3P49135 Lig3-202ENSMUST00000080461 3056 ntTSL 5 BASIC14.89□□□□□ -0.03
Ercc3P49135 Draxin-201ENSMUST00000030862 5200 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Ercc3P49135 Vmn1r45-207ENSMUST00000228492 2849 ntBASIC14.88□□□□□ -0.03
Ercc3P49135 Rgs11-202ENSMUST00000122058 2005 ntAPPRIS ALT2 TSL 2 BASIC14.88□□□□□ -0.03
Ercc3P49135 Tuba1a-201ENSMUST00000097014 1647 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Ercc3P49135 Bach2-202ENSMUST00000108180 8882 ntAPPRIS P2 TSL 5 BASIC14.88□□□□□ -0.03
Ercc3P49135 Espn-201ENSMUST00000030785 3406 ntAPPRIS P2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Ercc3P49135 Gm16582-201ENSMUST00000159627 1930 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Ercc3P49135 Acadl-201ENSMUST00000027153 1916 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Ercc3P49135 Etl4-201ENSMUST00000045555 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Ercc3P49135 Rnf17-202ENSMUST00000223627 2077 ntBASIC14.88□□□□□ -0.03
Ercc3P49135 Clca2-203ENSMUST00000198993 2774 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Ercc3P49135 Fbxl12-203ENSMUST00000131128 4182 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Ercc3P49135 Zbtb7b-202ENSMUST00000107432 3639 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Ercc3P49135 Gm14123-201ENSMUST00000156345 2658 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Ercc3P49135 Rfx1-204ENSMUST00000211046 3677 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
Ercc3P49135 Gm25214-201ENSMUST00000104573 129 ntBASIC14.88□□□□□ -0.03
Ercc3P49135 Gm13736-201ENSMUST00000119272 253 ntBASIC14.88□□□□□ -0.03
Ercc3P49135 Gm13492-201ENSMUST00000119772 665 ntBASIC14.88□□□□□ -0.03
Ercc3P49135 Rab11fip4os2-201ENSMUST00000123067 689 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Ercc3P49135 Armc2-208ENSMUST00000162405 1135 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Ercc3P49135 Gm26542-201ENSMUST00000180443 1235 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Ercc3P49135 Gm2546-201ENSMUST00000182630 991 ntBASIC14.88□□□□□ -0.03
Ercc3P49135 Gm4691-202ENSMUST00000182989 885 ntTSL 5 BASIC14.88□□□□□ -0.03
Ercc3P49135 2010106C02Rik-201ENSMUST00000191222 660 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Ercc3P49135 Crip2-206ENSMUST00000200380 864 ntTSL 3 BASIC14.88□□□□□ -0.03
Ercc3P49135 Gm44172-201ENSMUST00000203903 1235 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Ercc3P49135 Gm45184-201ENSMUST00000206354 955 ntTSL 5 BASIC14.88□□□□□ -0.03
Ercc3P49135 Gm44632-201ENSMUST00000207245 474 ntTSL 2 BASIC14.88□□□□□ -0.03
Ercc3P49135 Kcnn1-204ENSMUST00000212086 2964 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Ercc3P49135 AC112680.3-201ENSMUST00000215297 488 ntTSL 3 BASIC14.88□□□□□ -0.03
Ercc3P49135 Gm9368-201ENSMUST00000219348 831 ntBASIC14.88□□□□□ -0.03
Ercc3P49135 Morn2-202ENSMUST00000227729 656 ntBASIC14.88□□□□□ -0.03
Ercc3P49135 Ndufb3-201ENSMUST00000027193 763 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Ercc3P49135 Il25-201ENSMUST00000037863 1064 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Ercc3P49135 Ssc4d-201ENSMUST00000054895 1191 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Ercc3P49135 Rpl10-201ENSMUST00000008826 799 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Ercc3P49135 Gm36745-201ENSMUST00000213455 1594 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Ercc3P49135 Stx11-202ENSMUST00000163425 4032 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Ercc3P49135 Rccd1-201ENSMUST00000047362 3336 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Ercc3P49135 Csnk1a1-202ENSMUST00000163205 3204 ntAPPRIS ALT1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Ercc3P49135 Apc2-202ENSMUST00000105359 9173 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
Ercc3P49135 Prrt3-205ENSMUST00000205170 1903 ntAPPRIS ALT2 TSL 2 BASIC14.88□□□□□ -0.03
Ercc3P49135 Dgcr14-201ENSMUST00000003621 2819 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Ercc3P49135 Ak4-202ENSMUST00000106945 4175 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Ercc3P49135 Nup205-204ENSMUST00000201374 6411 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Ercc3P49135 Dpp8-201ENSMUST00000034960 4808 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Ercc3P49135 Gm39822-201ENSMUST00000212253 2284 ntTSL 5 BASIC14.87□□□□□ -0.03
Ercc3P49135 Comt-204ENSMUST00000165430 1978 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
Ercc3P49135 Pipox-201ENSMUST00000017597 1998 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Ercc3P49135 Gm21964-203ENSMUST00000219454 1513 ntAPPRIS P5 TSL 5 BASIC14.87□□□□□ -0.03
Ercc3P49135 Cnmd-203ENSMUST00000165835 1362 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
Ercc3P49135 Gipc3-201ENSMUST00000045102 3521 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Ercc3P49135 Chrnd-201ENSMUST00000073252 2925 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Ercc3P49135 Cdc37l1-207ENSMUST00000225210 4163 ntAPPRIS ALT2 BASIC14.87□□□□□ -0.03
Ercc3P49135 Msh6-201ENSMUST00000005503 4254 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Ercc3P49135 Hnrnph2-202ENSMUST00000059297 2364 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Retrieved 100 of 76,532 protein–RNA pairs in 28.7 ms