Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Ap3s1-201ENSMUST00000025357 1520 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Sdc1P18828 7420426K07Rik-201ENSMUST00000098460 1504 ntAPPRIS P1 BASIC10.24□□□□□ -0.77
Sdc1P18828 3110062M04Rik-201ENSMUST00000055097 3681 ntAPPRIS P3 TSL 1 (best) BASIC10.24□□□□□ -0.77
Sdc1P18828 Fam126a-203ENSMUST00000115109 2195 ntTSL 5 BASIC10.24□□□□□ -0.77
Sdc1P18828 Syt6-203ENSMUST00000118117 1856 ntTSL 1 (best) BASIC10.24□□□□□ -0.77
Sdc1P18828 Zmynd8-220ENSMUST00000170272 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC10.24□□□□□ -0.77
Sdc1P18828 Als2cl-201ENSMUST00000084926 5079 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Sdc1P18828 Tmprss6-201ENSMUST00000017086 3191 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Sdc1P18828 Thap7-201ENSMUST00000100125 1248 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Sdc1P18828 Mir686-201ENSMUST00000102174 109 ntBASIC10.24□□□□□ -0.77
Sdc1P18828 Gm6447-201ENSMUST00000118905 835 ntBASIC10.24□□□□□ -0.77
Sdc1P18828 Mir1897-201ENSMUST00000122581 272 ntBASIC10.24□□□□□ -0.77
Sdc1P18828 Tex30-206ENSMUST00000133677 935 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Sdc1P18828 Gm20521-201ENSMUST00000134077 1245 ntAPPRIS P1 TSL 5 BASIC10.24□□□□□ -0.77
Sdc1P18828 Pcp2-204ENSMUST00000136105 504 ntAPPRIS P4 TSL 1 (best) BASIC10.24□□□□□ -0.77
Sdc1P18828 Rprl2-201ENSMUST00000157150 290 ntBASIC10.24□□□□□ -0.77
Sdc1P18828 Tmem255b-201ENSMUST00000167071 1138 ntTSL 1 (best) BASIC10.24□□□□□ -0.77
Sdc1P18828 Bag2-203ENSMUST00000187602 378 ntTSL 2 BASIC10.24□□□□□ -0.77
Sdc1P18828 Gm29541-201ENSMUST00000191351 678 ntBASIC10.24□□□□□ -0.77
Sdc1P18828 Ap2s1-204ENSMUST00000205607 372 ntTSL 3 BASIC10.24□□□□□ -0.77
Sdc1P18828 Gm45612-201ENSMUST00000211320 160 ntBASIC10.24□□□□□ -0.77
Sdc1P18828 Colca2-202ENSMUST00000215038 1269 ntAPPRIS P1 TSL 5 BASIC10.24□□□□□ -0.77
Sdc1P18828 Miox-201ENSMUST00000023282 1130 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Sdc1P18828 Nsmce1-201ENSMUST00000033006 1120 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Sdc1P18828 Mrps21-201ENSMUST00000067298 488 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Sdc1P18828 Commd5-201ENSMUST00000068407 1037 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Sdc1P18828 Mdk-202ENSMUST00000069423 773 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Sdc1P18828 Myh10-203ENSMUST00000102611 7791 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Sdc1P18828 Uimc1-201ENSMUST00000026997 2931 ntAPPRIS P2 TSL 1 (best) BASIC10.24□□□□□ -0.77
Sdc1P18828 Elovl1-207ENSMUST00000167636 1340 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Sdc1P18828 Tbc1d14-204ENSMUST00000130417 2665 ntTSL 5 BASIC10.24□□□□□ -0.77
Sdc1P18828 1810014B01Rik-201ENSMUST00000181587 1661 ntTSL 1 (best) BASIC10.24□□□□□ -0.77
Sdc1P18828 Scn5a-202ENSMUST00000117911 8453 ntAPPRIS P3 TSL 1 (best) BASIC10.24□□□□□ -0.77
Sdc1P18828 Nfia-202ENSMUST00000075448 9526 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Sdc1P18828 Scml2-201ENSMUST00000019101 4842 ntAPPRIS P3 TSL 1 (best) BASIC10.24□□□□□ -0.77
Sdc1P18828 Bahcc1-201ENSMUST00000044985 10726 ntAPPRIS P3 TSL 5 BASIC10.24□□□□□ -0.77
Sdc1P18828 Gm26778-201ENSMUST00000181443 3805 ntTSL 5 BASIC10.24□□□□□ -0.77
Sdc1P18828 Trim23-203ENSMUST00000069187 3546 ntTSL 1 (best) BASIC10.24□□□□□ -0.77
Sdc1P18828 Nol3-201ENSMUST00000014920 3176 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Sdc1P18828 Bpi-202ENSMUST00000109499 1778 ntAPPRIS ALT2 TSL 1 (best) BASIC10.24□□□□□ -0.77
Sdc1P18828 Aamp-202ENSMUST00000178235 1756 ntAPPRIS ALT1 TSL 5 BASIC10.24□□□□□ -0.77
Sdc1P18828 Actl7b-201ENSMUST00000095080 1439 ntAPPRIS P1 BASIC10.24□□□□□ -0.77
Sdc1P18828 Immt-203ENSMUST00000114151 2518 ntAPPRIS ALT2 TSL 1 (best) BASIC10.24□□□□□ -0.77
Sdc1P18828 Gab3-201ENSMUST00000037374 2153 ntAPPRIS P2 TSL 1 (best) BASIC10.24□□□□□ -0.77
Sdc1P18828 Galnt10-201ENSMUST00000066987 4715 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Sdc1P18828 Gm18227-201ENSMUST00000211082 1468 ntBASIC10.23□□□□□ -0.77
Sdc1P18828 Fcer2a-201ENSMUST00000005678 2242 ntAPPRIS P3 TSL 1 (best) BASIC10.23□□□□□ -0.77
Sdc1P18828 Cd300lf-201ENSMUST00000051264 1864 ntAPPRIS P3 TSL 1 (best) BASIC10.23□□□□□ -0.77
Sdc1P18828 Tmem161a-201ENSMUST00000002413 3018 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Sdc1P18828 Calu-202ENSMUST00000090481 2670 ntAPPRIS ALT1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Sdc1P18828 Slc25a42-202ENSMUST00000110127 3196 ntAPPRIS P1 TSL 5 BASIC10.23□□□□□ -0.77
Sdc1P18828 Ces4a-201ENSMUST00000161289 2433 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Sdc1P18828 Accs-201ENSMUST00000041593 2036 ntAPPRIS P3 TSL 1 (best) BASIC10.23□□□□□ -0.77
Sdc1P18828 Dna2-203ENSMUST00000131422 4122 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Sdc1P18828 Tanc1-201ENSMUST00000037526 7873 ntAPPRIS P3 TSL 5 BASIC10.23□□□□□ -0.77
Sdc1P18828 Mat2b-202ENSMUST00000101347 2053 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
Sdc1P18828 Rab8a-201ENSMUST00000003121 4550 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Sdc1P18828 Zfp398-201ENSMUST00000079881 2906 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Sdc1P18828 Hs3st1-202ENSMUST00000117944 1686 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Sdc1P18828 Tctn3-203ENSMUST00000135795 1686 ntAPPRIS ALT2 TSL 1 (best) BASIC10.23□□□□□ -0.77
Sdc1P18828 Krt33a-201ENSMUST00000018399 1683 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Sdc1P18828 Gm45272-203ENSMUST00000211111 1693 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
Sdc1P18828 Rnf220-202ENSMUST00000094853 1675 ntAPPRIS ALT2 TSL 1 (best) BASIC10.23□□□□□ -0.77
Sdc1P18828 Lhx9-205ENSMUST00000112030 4633 ntTSL 5 BASIC10.23□□□□□ -0.77
Sdc1P18828 Gm26811-201ENSMUST00000181258 5485 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
Sdc1P18828 Ptp4a2-207ENSMUST00000165853 3382 ntAPPRIS P1 TSL 5 BASIC10.23□□□□□ -0.77
Sdc1P18828 Ophn1-201ENSMUST00000033560 7170 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Sdc1P18828 Gm12585-201ENSMUST00000117307 290 ntBASIC10.23□□□□□ -0.77
Sdc1P18828 Gm7820-201ENSMUST00000121012 1052 ntBASIC10.23□□□□□ -0.77
Sdc1P18828 Gm21984-201ENSMUST00000123117 822 ntTSL 5 BASIC10.23□□□□□ -0.77
Sdc1P18828 Gm14966-202ENSMUST00000129675 649 ntTSL 2 BASIC10.23□□□□□ -0.77
Sdc1P18828 Gm13391-202ENSMUST00000147685 816 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
Sdc1P18828 Rims3-204ENSMUST00000171363 977 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Sdc1P18828 Fxr1-206ENSMUST00000198051 2127 ntTSL 5 BASIC10.23□□□□□ -0.77
Sdc1P18828 Gm18916-201ENSMUST00000198264 1246 ntBASIC10.23□□□□□ -0.77
Sdc1P18828 Gm19265-201ENSMUST00000201818 894 ntTSL 3 BASIC10.23□□□□□ -0.77
Sdc1P18828 Dkkl1-204ENSMUST00000210741 662 ntAPPRIS ALT2 TSL 2 BASIC10.23□□□□□ -0.77
Sdc1P18828 AC135669.1-202ENSMUST00000216742 540 ntBASIC10.23□□□□□ -0.77
Sdc1P18828 Mettl26-201ENSMUST00000026827 817 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Sdc1P18828 C1qa-201ENSMUST00000046285 1040 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Sdc1P18828 Lcn10-201ENSMUST00000058912 1106 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Sdc1P18828 Hnrnpa2b1-203ENSMUST00000114459 1728 ntAPPRIS ALT1 TSL 5 BASIC10.23□□□□□ -0.77
Sdc1P18828 Ppnr-201ENSMUST00000190974 3525 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
Sdc1P18828 Gm28719-201ENSMUST00000187779 1757 ntBASIC10.23□□□□□ -0.77
Sdc1P18828 Cpq-207ENSMUST00000228916 1842 ntAPPRIS P1 BASIC10.23□□□□□ -0.77
Sdc1P18828 Fam110b-201ENSMUST00000054857 3210 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Sdc1P18828 Zfp810-201ENSMUST00000086278 3238 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Sdc1P18828 Lypd1-201ENSMUST00000027582 1447 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
Sdc1P18828 Cln3-201ENSMUST00000032962 2386 ntAPPRIS P2 TSL 1 (best) BASIC10.23□□□□□ -0.77
Sdc1P18828 Rdh8-201ENSMUST00000066387 1405 ntAPPRIS P1 TSL 2 BASIC10.23□□□□□ -0.77
Sdc1P18828 Ctsd-201ENSMUST00000066401 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC10.23□□□□□ -0.77
Sdc1P18828 Prx-202ENSMUST00000098644 4841 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
Sdc1P18828 Fam172a-201ENSMUST00000091459 3892 ntAPPRIS ALT2 TSL 1 (best) BASIC10.23□□□□□ -0.77
Sdc1P18828 Egfr-202ENSMUST00000102884 2943 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
Sdc1P18828 Nr5a1-201ENSMUST00000028084 2947 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Sdc1P18828 Hmbox1-202ENSMUST00000067843 2931 ntAPPRIS P3 TSL 1 (best) BASIC10.23□□□□□ -0.77
Sdc1P18828 Olfr5-202ENSMUST00000209866 2980 ntAPPRIS P1 TSL 5 BASIC10.23□□□□□ -0.77
Sdc1P18828 Gm20425-201ENSMUST00000166836 3028 ntAPPRIS P1 TSL 5 BASIC10.23□□□□□ -0.77
Sdc1P18828 Kirrel3-209ENSMUST00000190549 3074 ntAPPRIS ALT2 TSL 1 (best) BASIC10.22□□□□□ -0.77
Sdc1P18828 Lcor-201ENSMUST00000067795 4810 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
Retrieved 100 of 76,532 protein–RNA pairs in 32 ms