Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Atp1a2-201ENSMUST00000085913 6227 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Msx1P13297 Malt1-202ENSMUST00000224056 4028 ntAPPRIS ALT2 BASIC12.07□□□□□ -0.48
Msx1P13297 Ccr7-201ENSMUST00000103134 1978 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Msx1P13297 Mlkl-202ENSMUST00000120432 1976 ntAPPRIS P3 TSL 1 (best) BASIC12.07□□□□□ -0.48
Msx1P13297 Ssr1-203ENSMUST00000225246 1825 ntBASIC12.07□□□□□ -0.48
Msx1P13297 Atg16l1-203ENSMUST00000113190 3102 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Msx1P13297 Zfp207-206ENSMUST00000165565 2311 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Msx1P13297 Gm26651-201ENSMUST00000181851 2325 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Msx1P13297 Ccdc163-201ENSMUST00000030452 1524 ntAPPRIS ALT2 TSL 5 BASIC12.06□□□□□ -0.48
Msx1P13297 Suclg1-201ENSMUST00000064740 1519 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Msx1P13297 Oraov1-201ENSMUST00000033388 2015 ntAPPRIS P3 TSL 1 (best) BASIC12.06□□□□□ -0.48
Msx1P13297 Zyx-202ENSMUST00000164375 3188 ntAPPRIS P3 TSL 1 (best) BASIC12.06□□□□□ -0.48
Msx1P13297 Mfn2-203ENSMUST00000105715 4043 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Msx1P13297 Mlx-203ENSMUST00000107303 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Msx1P13297 D6Ertd527e-203ENSMUST00000203747 2216 ntAPPRIS ALT2 TSL 5 BASIC12.06□□□□□ -0.48
Msx1P13297 Hdgfl2-210ENSMUST00000225843 2238 ntAPPRIS ALT2 BASIC12.06□□□□□ -0.48
Msx1P13297 Erg-201ENSMUST00000077773 2232 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Msx1P13297 Wasl-201ENSMUST00000031695 4352 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Msx1P13297 Gm6015-201ENSMUST00000217493 1586 ntBASIC12.06□□□□□ -0.48
Msx1P13297 Prss42-201ENSMUST00000035715 1584 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Msx1P13297 Snx13-201ENSMUST00000048519 6231 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Msx1P13297 Hsd3b3-203ENSMUST00000107018 1443 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Msx1P13297 Fam71f1-203ENSMUST00000164560 1411 ntAPPRIS P4 TSL 1 (best) BASIC12.06□□□□□ -0.48
Msx1P13297 Galnt6-202ENSMUST00000159715 3796 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Msx1P13297 Adat1-203ENSMUST00000139820 2762 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Msx1P13297 Abo-201ENSMUST00000102900 1779 ntAPPRIS P2 TSL 1 (best) BASIC12.06□□□□□ -0.48
Msx1P13297 Ddo-203ENSMUST00000213503 1759 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Msx1P13297 Vmn1r3-201ENSMUST00000105159 1011 ntAPPRIS P1 BASIC12.06□□□□□ -0.48
Msx1P13297 Gm11637-201ENSMUST00000120601 592 ntBASIC12.06□□□□□ -0.48
Msx1P13297 Pisd-ps1-203ENSMUST00000145164 789 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Msx1P13297 Gm8988-201ENSMUST00000155015 1240 ntBASIC12.06□□□□□ -0.48
Msx1P13297 BC046401-201ENSMUST00000155786 847 ntTSL 3 BASIC12.06□□□□□ -0.48
Msx1P13297 Gm28041-201ENSMUST00000166080 779 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Msx1P13297 Grp-203ENSMUST00000173985 952 ntAPPRIS P2 TSL 5 BASIC12.06□□□□□ -0.48
Msx1P13297 4930594M17Rik-201ENSMUST00000181204 1033 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Msx1P13297 Mir6979-201ENSMUST00000183927 56 ntBASIC12.06□□□□□ -0.48
Msx1P13297 Gm27216-202ENSMUST00000184100 635 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Msx1P13297 Tmem254a-204ENSMUST00000185006 2147 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Msx1P13297 Prr29-204ENSMUST00000188561 592 ntAPPRIS ALT2 TSL 5 BASIC12.06□□□□□ -0.48
Msx1P13297 Olfr1414-202ENSMUST00000189174 1159 ntAPPRIS P1 TSL 3 BASIC12.06□□□□□ -0.48
Msx1P13297 Prr29-206ENSMUST00000190795 822 ntTSL 5 BASIC12.06□□□□□ -0.48
Msx1P13297 Gm9445-201ENSMUST00000207454 1285 ntBASIC12.06□□□□□ -0.48
Msx1P13297 Gm1000-201ENSMUST00000220520 801 ntTSL 3 BASIC12.06□□□□□ -0.48
Msx1P13297 Gm34466-201ENSMUST00000222218 505 ntTSL 2 BASIC12.06□□□□□ -0.48
Msx1P13297 Olfr983-201ENSMUST00000050996 1050 ntTSL 2 BASIC12.06□□□□□ -0.48
Msx1P13297 Nmral1-201ENSMUST00000074970 1155 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Msx1P13297 Zdhhc12-201ENSMUST00000081838 1187 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Msx1P13297 BC061237-201ENSMUST00000096899 899 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Msx1P13297 Zscan20-202ENSMUST00000097877 5364 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Msx1P13297 Bbof1-201ENSMUST00000081828 2187 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Msx1P13297 Nfkb2-201ENSMUST00000073116 3054 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Msx1P13297 Vps29-208ENSMUST00000155671 2716 ntAPPRIS P3 TSL 1 (best) BASIC12.06□□□□□ -0.48
Msx1P13297 Cenpo-201ENSMUST00000020981 2037 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
Msx1P13297 C77080-203ENSMUST00000106051 5049 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
Msx1P13297 Rnf220-202ENSMUST00000094853 1675 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
Msx1P13297 Rpn1-201ENSMUST00000032143 3633 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Msx1P13297 Eif4g3-204ENSMUST00000105830 3252 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Msx1P13297 Lmf2-201ENSMUST00000023283 2906 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Msx1P13297 Gm10392-201ENSMUST00000100807 1732 ntAPPRIS P1 TSL 2 BASIC12.06□□□□□ -0.48
Msx1P13297 Armc7-201ENSMUST00000035240 2260 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Msx1P13297 Tmprss9-203ENSMUST00000219817 3581 ntAPPRIS P1 TSL 5 BASIC12.05□□□□□ -0.48
Msx1P13297 Ttc23l-201ENSMUST00000022857 1931 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Msx1P13297 Mkrn1-201ENSMUST00000031985 3046 ntAPPRIS P3 TSL 1 (best) BASIC12.05□□□□□ -0.48
Msx1P13297 Pcdhgc3-201ENSMUST00000076807 4687 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Msx1P13297 Pdlim5-204ENSMUST00000168967 1755 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Msx1P13297 Hnrnpk-232ENSMUST00000225674 2704 ntBASIC12.05□□□□□ -0.48
Msx1P13297 Nfe2l1-204ENSMUST00000107659 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC12.05□□□□□ -0.48
Msx1P13297 Acin1-202ENSMUST00000022794 2365 ntAPPRIS ALT2 TSL 5 BASIC12.05□□□□□ -0.48
Msx1P13297 Eif4enif1-202ENSMUST00000110048 3712 ntTSL 5 BASIC12.05□□□□□ -0.48
Msx1P13297 Avpr2-201ENSMUST00000033765 1812 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Msx1P13297 Uhrf1bp1-201ENSMUST00000114849 8584 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Msx1P13297 Prss36-202ENSMUST00000118755 3028 ntAPPRIS P2 TSL 5 BASIC12.05□□□□□ -0.48
Msx1P13297 Nfkb1-206ENSMUST00000164430 3007 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Msx1P13297 Trim26-210ENSMUST00000179968 3203 ntAPPRIS ALT2 TSL 5 BASIC12.05□□□□□ -0.48
Msx1P13297 9230102O04Rik-201ENSMUST00000114915 528 ntAPPRIS P1 TSL 2 BASIC12.05□□□□□ -0.48
Msx1P13297 Gm16479-201ENSMUST00000121706 932 ntBASIC12.05□□□□□ -0.48
Msx1P13297 Gm14017-201ENSMUST00000121934 386 ntBASIC12.05□□□□□ -0.48
Msx1P13297 Pdlim2-204ENSMUST00000127836 920 ntTSL 5 BASIC12.05□□□□□ -0.48
Msx1P13297 Gm15829-201ENSMUST00000145415 869 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Msx1P13297 Gm15640-201ENSMUST00000152070 527 ntTSL 2 BASIC12.05□□□□□ -0.48
Msx1P13297 Gm2310-201ENSMUST00000179217 1131 ntAPPRIS P1 TSL 5 BASIC12.05□□□□□ -0.48
Msx1P13297 Gm29585-203ENSMUST00000188089 835 ntTSL 5 BASIC12.05□□□□□ -0.48
Msx1P13297 2810404M03Rik-201ENSMUST00000188324 1245 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Msx1P13297 2010320M18Rik-201ENSMUST00000191396 1009 ntBASIC12.05□□□□□ -0.48
Msx1P13297 Gm37986-201ENSMUST00000193285 383 ntBASIC12.05□□□□□ -0.48
Msx1P13297 Gm38297-201ENSMUST00000195122 1057 ntBASIC12.05□□□□□ -0.48
Msx1P13297 A830092H15Rik-202ENSMUST00000195446 649 ntTSL 3 BASIC12.05□□□□□ -0.48
Msx1P13297 Gm45022-201ENSMUST00000208332 545 ntTSL 5 BASIC12.05□□□□□ -0.48
Msx1P13297 4930479H17Rik-201ENSMUST00000208824 292 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Msx1P13297 AC138604.1-201ENSMUST00000226969 739 ntBASIC12.05□□□□□ -0.48
Msx1P13297 Fam96a-201ENSMUST00000034945 1240 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Msx1P13297 Odf4-201ENSMUST00000038932 1078 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Msx1P13297 Trem3-201ENSMUST00000048065 994 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Msx1P13297 2310057N15Rik-201ENSMUST00000054223 1028 ntAPPRIS P1 BASIC12.05□□□□□ -0.48
Msx1P13297 Cryba2-201ENSMUST00000006721 720 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Msx1P13297 Olfr765-201ENSMUST00000071559 930 ntAPPRIS P1 BASIC12.05□□□□□ -0.48
Msx1P13297 Rpl30-201ENSMUST00000009039 570 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Msx1P13297 Cbx3-ps1-201ENSMUST00000091539 545 ntBASIC12.05□□□□□ -0.48
Msx1P13297 Chchd10-203ENSMUST00000219839 1488 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Msx1P13297 Kcnd3-201ENSMUST00000079169 2102 ntAPPRIS P4 TSL 1 (best) BASIC12.05□□□□□ -0.48
Retrieved 100 of 76,532 protein–RNA pairs in 38.8 ms