Protein–RNA interactions for Protein: O88207

Col5a1, Collagen alpha-1(V) chain, mousemouse

Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col5a1O88207 2610001J05Rik-203ENSMUST00000185219 1606 ntAPPRIS P1 BASIC11.16□□□□□ -0.62
Col5a1O88207 Armc6-201ENSMUST00000019679 2263 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Col5a1O88207 Eif4g1-206ENSMUST00000115463 5378 ntAPPRIS ALT2 TSL 1 (best) BASIC11.15□□□□□ -0.62
Col5a1O88207 Hnrnpa2b1-203ENSMUST00000114459 1728 ntAPPRIS ALT1 TSL 5 BASIC11.15□□□□□ -0.62
Col5a1O88207 Ddx10-201ENSMUST00000065630 3128 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
Col5a1O88207 Slc25a45-206ENSMUST00000155697 1960 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
Col5a1O88207 Sh3glb1-201ENSMUST00000163279 3961 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
Col5a1O88207 Amz2-203ENSMUST00000103061 1832 ntAPPRIS P2 TSL 1 (best) BASIC11.15□□□□□ -0.62
Col5a1O88207 Mat2b-202ENSMUST00000101347 2053 ntTSL 1 (best) BASIC11.15□□□□□ -0.62
Col5a1O88207 Yap1-201ENSMUST00000065353 4171 ntAPPRIS ALT2 TSL 1 (best) BASIC11.15□□□□□ -0.62
Col5a1O88207 Gm27194-201ENSMUST00000175753 2936 ntBASIC11.15□□□□□ -0.62
Col5a1O88207 Gm44929-202ENSMUST00000209134 1653 ntTSL 1 (best) BASIC11.15□□□□□ -0.62
Col5a1O88207 Adam11-201ENSMUST00000068150 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC11.15□□□□□ -0.62
Col5a1O88207 Speg-205ENSMUST00000113590 3393 ntTSL 1 (best) BASIC11.15□□□□□ -0.62
Col5a1O88207 Rbmx2-ps-201ENSMUST00000119377 930 ntBASIC11.15□□□□□ -0.62
Col5a1O88207 Gm28037-201ENSMUST00000122365 611 ntTSL 3 BASIC11.15□□□□□ -0.62
Col5a1O88207 Churc1-203ENSMUST00000126408 462 ntTSL 2 BASIC11.15□□□□□ -0.62
Col5a1O88207 BC026585-203ENSMUST00000193791 778 ntTSL 2 BASIC11.15□□□□□ -0.62
Col5a1O88207 Gm10069-203ENSMUST00000204081 907 ntTSL 1 (best) BASIC11.15□□□□□ -0.62
Col5a1O88207 Gm17831-201ENSMUST00000205579 900 ntBASIC11.15□□□□□ -0.62
Col5a1O88207 Gm6905-201ENSMUST00000205729 511 ntBASIC11.15□□□□□ -0.62
Col5a1O88207 Mapk8ip3-201ENSMUST00000088345 5543 ntAPPRIS P3 TSL 1 (best) BASIC11.15□□□□□ -0.62
Col5a1O88207 Tbkbp1-201ENSMUST00000066078 3338 ntAPPRIS ALT2 TSL 5 BASIC11.15□□□□□ -0.62
Col5a1O88207 Adra1b-201ENSMUST00000067258 3331 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
Col5a1O88207 Oxa1l-201ENSMUST00000000985 2538 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
Col5a1O88207 Chst11-201ENSMUST00000040110 5527 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.63
Col5a1O88207 Ccdc88c-202ENSMUST00000085096 6313 ntAPPRIS ALT2 TSL 5 BASIC11.15□□□□□ -0.63
Col5a1O88207 Bak1-202ENSMUST00000078691 2387 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.63
Col5a1O88207 Crhr2-208ENSMUST00000212633 2041 ntTSL 1 (best) BASIC11.15□□□□□ -0.63
Col5a1O88207 Krtap10-10-201ENSMUST00000218843 1306 ntAPPRIS P1 BASIC11.15□□□□□ -0.63
Col5a1O88207 Chrnd-202ENSMUST00000186373 2949 ntTSL 1 (best) BASIC11.15□□□□□ -0.63
Col5a1O88207 Lifr-201ENSMUST00000067190 4143 ntAPPRIS P3 TSL 1 (best) BASIC11.14□□□□□ -0.63
Col5a1O88207 AC163354.1-205ENSMUST00000223262 1511 ntTSL 5 BASIC11.14□□□□□ -0.63
Col5a1O88207 Tspan1-201ENSMUST00000030465 1985 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Col5a1O88207 Pcsk6-202ENSMUST00000098391 4207 ntAPPRIS ALT2 TSL 1 (best) BASIC11.14□□□□□ -0.63
Col5a1O88207 Rnf17-202ENSMUST00000223627 2077 ntBASIC11.14□□□□□ -0.63
Col5a1O88207 Gm44942-201ENSMUST00000096093 2072 ntBASIC11.14□□□□□ -0.63
Col5a1O88207 Lins1-202ENSMUST00000077967 2647 ntAPPRIS ALT2 TSL 2 BASIC11.14□□□□□ -0.63
Col5a1O88207 Fibin-201ENSMUST00000099626 2267 ntAPPRIS P1 BASIC11.14□□□□□ -0.63
Col5a1O88207 Cenpx-203ENSMUST00000106154 873 ntTSL 2 BASIC11.14□□□□□ -0.63
Col5a1O88207 4930502E09Rik-201ENSMUST00000126016 755 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
Col5a1O88207 Gm23085-201ENSMUST00000157849 293 ntBASIC11.14□□□□□ -0.63
Col5a1O88207 Gm15978-201ENSMUST00000161043 738 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
Col5a1O88207 Gm6397-201ENSMUST00000161973 1069 ntBASIC11.14□□□□□ -0.63
Col5a1O88207 Gm23771-201ENSMUST00000178702 110 ntBASIC11.14□□□□□ -0.63
Col5a1O88207 Gm5852-201ENSMUST00000194119 1021 ntBASIC11.14□□□□□ -0.63
Col5a1O88207 Gm5542-201ENSMUST00000195485 1089 ntBASIC11.14□□□□□ -0.63
Col5a1O88207 Gm29797-201ENSMUST00000207856 755 ntAPPRIS P1 TSL 5 BASIC11.14□□□□□ -0.63
Col5a1O88207 Gm35368-201ENSMUST00000209554 1244 ntTSL 5 BASIC11.14□□□□□ -0.63
Col5a1O88207 Tmem258-201ENSMUST00000040372 606 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Col5a1O88207 Ifi27-205ENSMUST00000085065 977 ntAPPRIS ALT2 TSL 1 (best) BASIC11.14□□□□□ -0.63
Col5a1O88207 Kcnc2-204ENSMUST00000219301 2944 ntAPPRIS P2 TSL 1 (best) BASIC11.14□□□□□ -0.63
Col5a1O88207 Snrpn-201ENSMUST00000059305 1932 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Col5a1O88207 Flcn-202ENSMUST00000091246 2768 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Col5a1O88207 Adra1a-206ENSMUST00000225182 2337 ntBASIC11.14□□□□□ -0.63
Col5a1O88207 5033406O09Rik-201ENSMUST00000221314 1662 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
Col5a1O88207 Slc2a4-203ENSMUST00000141837 1776 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
Col5a1O88207 Scoc-202ENSMUST00000167525 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Col5a1O88207 Map2k7-206ENSMUST00000110998 3497 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Col5a1O88207 Prpf40a-206ENSMUST00000209364 2833 ntAPPRIS ALT2 TSL 5 BASIC11.14□□□□□ -0.63
Col5a1O88207 Tcf4-210ENSMUST00000128706 2066 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
Col5a1O88207 Madd-201ENSMUST00000066420 3753 ntAPPRIS ALT2 TSL 5 BASIC11.14□□□□□ -0.63
Col5a1O88207 Ppfia3-201ENSMUST00000003961 4647 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Col5a1O88207 Cyth1-201ENSMUST00000017276 3135 ntAPPRIS ALT1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Col5a1O88207 Iqsec2-202ENSMUST00000112604 5967 ntAPPRIS ALT2 TSL 1 (best) BASIC11.14□□□□□ -0.63
Col5a1O88207 Baiap2l1-201ENSMUST00000055190 3247 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Col5a1O88207 Gm9361-201ENSMUST00000198695 1507 ntBASIC11.14□□□□□ -0.63
Col5a1O88207 Wfdc8-201ENSMUST00000094351 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC11.14□□□□□ -0.63
Col5a1O88207 Aste1-201ENSMUST00000035181 2755 ntAPPRIS P3 TSL 1 (best) BASIC11.14□□□□□ -0.63
Col5a1O88207 Otx1-201ENSMUST00000006071 2789 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Col5a1O88207 Arntl2-203ENSMUST00000111638 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC11.14□□□□□ -0.63
Col5a1O88207 Arntl2-201ENSMUST00000080530 1740 ntAPPRIS P3 TSL 1 (best) BASIC11.14□□□□□ -0.63
Col5a1O88207 Sh3bp5l-201ENSMUST00000073128 2977 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Col5a1O88207 Nrxn1-206ENSMUST00000160800 5683 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
Col5a1O88207 Ankrd24-201ENSMUST00000119336 3561 ntAPPRIS P1 TSL 5 BASIC11.14□□□□□ -0.63
Col5a1O88207 Grin1-203ENSMUST00000114308 4165 ntTSL 5 BASIC11.14□□□□□ -0.63
Col5a1O88207 Aspg-201ENSMUST00000079400 2722 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Col5a1O88207 Gm11980-201ENSMUST00000121445 986 ntBASIC11.14□□□□□ -0.63
Col5a1O88207 Asb8-202ENSMUST00000123626 1100 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Col5a1O88207 Asb8-203ENSMUST00000123922 1162 ntAPPRIS P1 TSL 3 BASIC11.14□□□□□ -0.63
Col5a1O88207 Gm13278-201ENSMUST00000177771 549 ntAPPRIS P1 BASIC11.14□□□□□ -0.63
Col5a1O88207 Gm13275-201ENSMUST00000178347 549 ntAPPRIS P1 BASIC11.14□□□□□ -0.63
Col5a1O88207 Gm13277-201ENSMUST00000178480 549 ntAPPRIS P1 BASIC11.14□□□□□ -0.63
Col5a1O88207 Gm13279-201ENSMUST00000178602 549 ntAPPRIS P1 BASIC11.14□□□□□ -0.63
Col5a1O88207 Gm13289-201ENSMUST00000179158 549 ntAPPRIS P1 BASIC11.14□□□□□ -0.63
Col5a1O88207 Gm13276-201ENSMUST00000179372 549 ntAPPRIS P1 BASIC11.14□□□□□ -0.63
Col5a1O88207 Gm13287-201ENSMUST00000179490 549 ntAPPRIS P1 BASIC11.14□□□□□ -0.63
Col5a1O88207 Gm19091-201ENSMUST00000208120 978 ntBASIC11.14□□□□□ -0.63
Col5a1O88207 Gm44710-201ENSMUST00000208885 471 ntTSL 2 BASIC11.14□□□□□ -0.63
Col5a1O88207 Gm44934-201ENSMUST00000208941 238 ntTSL 5 BASIC11.14□□□□□ -0.63
Col5a1O88207 Gm9785-201ENSMUST00000062642 1006 ntBASIC11.14□□□□□ -0.63
Col5a1O88207 Gm11555-201ENSMUST00000073126 492 ntTSL 5 BASIC11.14□□□□□ -0.63
Col5a1O88207 Gm13271-201ENSMUST00000094992 549 ntAPPRIS P1 BASIC11.14□□□□□ -0.63
Col5a1O88207 Parp2-201ENSMUST00000036126 1894 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Col5a1O88207 4930588K23Rik-201ENSMUST00000156827 1963 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
Col5a1O88207 Cdkl2-203ENSMUST00000113140 2559 ntAPPRIS P4 TSL 5 BASIC11.14□□□□□ -0.63
Col5a1O88207 5830411N06Rik-202ENSMUST00000093984 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC11.14□□□□□ -0.63
Col5a1O88207 Edem3-203ENSMUST00000188145 3262 ntTSL 5 BASIC11.14□□□□□ -0.63
Col5a1O88207 Spg20-202ENSMUST00000107971 3567 ntAPPRIS ALT2 TSL 1 (best) BASIC11.14□□□□□ -0.63
Col5a1O88207 Ubqln5-201ENSMUST00000053743 1915 ntAPPRIS P1 BASIC11.13□□□□□ -0.63
Retrieved 100 of 76,532 protein–RNA pairs in 30.6 ms