Protein–RNA interactions for Protein: F7BJK1

Pcdh1, Protocadherin 1 (Fragment), mousemouse

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdh1F7BJK1 Fam60a-201ENSMUST00000054080 2697 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Pcdh1F7BJK1 Cacnb2-203ENSMUST00000114723 3945 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Pcdh1F7BJK1 Mfsd4a-207ENSMUST00000159038 1957 ntAPPRIS P2 TSL 5 BASIC11.29□□□□□ -0.6
Pcdh1F7BJK1 Gm6034-201ENSMUST00000097331 1633 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Pcdh1F7BJK1 Adck1-202ENSMUST00000166940 2199 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Pcdh1F7BJK1 Apoc1-202ENSMUST00000108451 532 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Pcdh1F7BJK1 Rpl34-203ENSMUST00000133802 711 ntTSL 2 BASIC11.29□□□□□ -0.6
Pcdh1F7BJK1 Gm14064-201ENSMUST00000134833 727 ntTSL 3 BASIC11.29□□□□□ -0.6
Pcdh1F7BJK1 Meg3-208ENSMUST00000143847 706 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Pcdh1F7BJK1 Egfl7-208ENSMUST00000149789 683 ntTSL 3 BASIC11.29□□□□□ -0.6
Pcdh1F7BJK1 Ly6g6e-203ENSMUST00000172678 750 ntAPPRIS P2 TSL 3 BASIC11.29□□□□□ -0.6
Pcdh1F7BJK1 Gm22121-201ENSMUST00000175148 54 ntBASIC11.29□□□□□ -0.6
Pcdh1F7BJK1 Trp53tg5-201ENSMUST00000017864 934 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Pcdh1F7BJK1 Gm37047-201ENSMUST00000191992 533 ntTSL 5 BASIC11.29□□□□□ -0.6
Pcdh1F7BJK1 AL593843.1-201ENSMUST00000195891 145 ntBASIC11.29□□□□□ -0.6
Pcdh1F7BJK1 Fam168a-206ENSMUST00000208013 1129 ntTSL 5 BASIC11.29□□□□□ -0.6
Pcdh1F7BJK1 AC098716.1-201ENSMUST00000213527 703 ntBASIC11.29□□□□□ -0.6
Pcdh1F7BJK1 Gm32635-201ENSMUST00000221493 1162 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Pcdh1F7BJK1 Upk3bl-201ENSMUST00000006303 1045 ntAPPRIS P2 TSL 1 (best) BASIC11.29□□□□□ -0.6
Pcdh1F7BJK1 Gypa-201ENSMUST00000063359 1848 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Pcdh1F7BJK1 Vat1l-201ENSMUST00000049509 3666 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Pcdh1F7BJK1 Hcls1-201ENSMUST00000023531 2016 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Pcdh1F7BJK1 Lsp1-201ENSMUST00000018963 1695 ntAPPRIS ALT2 TSL 1 (best) BASIC11.29□□□□□ -0.6
Pcdh1F7BJK1 Pbxip1-201ENSMUST00000038942 4479 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Pcdh1F7BJK1 Sin3b-201ENSMUST00000004494 4115 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Pcdh1F7BJK1 Phactr1-206ENSMUST00000131942 2056 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Pcdh1F7BJK1 4930432B10Rik-201ENSMUST00000181688 2085 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Pcdh1F7BJK1 Vamp1-203ENSMUST00000100942 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Pcdh1F7BJK1 2900069G24Rik-201ENSMUST00000192780 1311 ntBASIC11.29□□□□□ -0.6
Pcdh1F7BJK1 Ikbip-201ENSMUST00000020149 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC11.29□□□□□ -0.6
Pcdh1F7BJK1 Aifm2-203ENSMUST00000099706 3086 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Pcdh1F7BJK1 Hspa4l-208ENSMUST00000204702 9479 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Pcdh1F7BJK1 Kif3b-201ENSMUST00000028977 5635 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Pcdh1F7BJK1 Rwdd2a-201ENSMUST00000034988 1355 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Pcdh1F7BJK1 Steap3-202ENSMUST00000112640 2752 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Pcdh1F7BJK1 Ddah1-201ENSMUST00000029845 3764 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Pcdh1F7BJK1 1700082M22Rik-201ENSMUST00000067136 2022 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Pcdh1F7BJK1 Zfp809-206ENSMUST00000215902 1800 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Pcdh1F7BJK1 Rin3-201ENSMUST00000056950 3892 ntAPPRIS P3 TSL 1 (best) BASIC11.28□□□□□ -0.6
Pcdh1F7BJK1 AC164426.2-201ENSMUST00000225993 2492 ntBASIC11.28□□□□□ -0.6
Pcdh1F7BJK1 Trappc8-202ENSMUST00000097658 2703 ntAPPRIS P3 TSL 1 (best) BASIC11.28□□□□□ -0.6
Pcdh1F7BJK1 Slc25a22-203ENSMUST00000106007 2546 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Pcdh1F7BJK1 Epb41l5-201ENSMUST00000027632 2523 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Pcdh1F7BJK1 Trav13d-2-201ENSMUST00000103596 264 ntAPPRIS P1 BASIC11.28□□□□□ -0.6
Pcdh1F7BJK1 Trav13n-2-201ENSMUST00000103622 264 ntAPPRIS P1 BASIC11.28□□□□□ -0.6
Pcdh1F7BJK1 Boll-202ENSMUST00000114423 1106 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Pcdh1F7BJK1 Gm11618-201ENSMUST00000117946 267 ntBASIC11.28□□□□□ -0.6
Pcdh1F7BJK1 Gm12384-201ENSMUST00000119228 919 ntBASIC11.28□□□□□ -0.6
Pcdh1F7BJK1 Tpd52-206ENSMUST00000121038 849 ntTSL 5 BASIC11.28□□□□□ -0.6
Pcdh1F7BJK1 Gm13123-201ENSMUST00000122173 492 ntBASIC11.28□□□□□ -0.6
Pcdh1F7BJK1 A530058N18Rik-202ENSMUST00000134129 411 ntTSL 3 BASIC11.28□□□□□ -0.6
Pcdh1F7BJK1 Gm16296-201ENSMUST00000159905 325 ntBASIC11.28□□□□□ -0.6
Pcdh1F7BJK1 Rab10os-207ENSMUST00000179924 823 ntTSL 5 BASIC11.28□□□□□ -0.6
Pcdh1F7BJK1 Srrt-212ENSMUST00000199243 2988 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.6
Pcdh1F7BJK1 Gm45785-201ENSMUST00000209690 988 ntAPPRIS P1 TSL 5 BASIC11.28□□□□□ -0.6
Pcdh1F7BJK1 Cdk7-205ENSMUST00000225990 1159 ntBASIC11.28□□□□□ -0.6
Pcdh1F7BJK1 Pts-201ENSMUST00000034570 1046 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Pcdh1F7BJK1 Cldn13-201ENSMUST00000008987 1067 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Pcdh1F7BJK1 H2afv-201ENSMUST00000093346 519 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Pcdh1F7BJK1 Gm17276-201ENSMUST00000180839 2782 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Pcdh1F7BJK1 Tnfrsf13b-201ENSMUST00000010286 2556 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Pcdh1F7BJK1 Scamp5-201ENSMUST00000046587 3225 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Pcdh1F7BJK1 0610040F04Rik-201ENSMUST00000137478 1734 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Pcdh1F7BJK1 Gm10604-201ENSMUST00000098260 1706 ntAPPRIS P1 BASIC11.28□□□□□ -0.6
Pcdh1F7BJK1 Satb2-202ENSMUST00000114415 5805 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Pcdh1F7BJK1 Arhgap35-202ENSMUST00000171937 6251 ntAPPRIS P1 TSL 5 BASIC11.28□□□□□ -0.6
Pcdh1F7BJK1 Pkp3-201ENSMUST00000066873 2848 ntAPPRIS P3 TSL 1 (best) BASIC11.28□□□□□ -0.6
Pcdh1F7BJK1 Tmem269-202ENSMUST00000212054 1504 ntAPPRIS P2 TSL 1 (best) BASIC11.28□□□□□ -0.6
Pcdh1F7BJK1 Rbm4-206ENSMUST00000180248 2610 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Pcdh1F7BJK1 Tcf4-254ENSMUST00000202674 2615 ntTSL 5 BASIC11.28□□□□□ -0.6
Pcdh1F7BJK1 Rgs12-201ENSMUST00000030984 5472 ntAPPRIS P3 TSL 1 (best) BASIC11.28□□□□□ -0.6
Pcdh1F7BJK1 Prkch-201ENSMUST00000021527 3545 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Pcdh1F7BJK1 Kcnab2-201ENSMUST00000030768 3533 ntAPPRIS ALT1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Pcdh1F7BJK1 Usp24-201ENSMUST00000094933 10575 ntAPPRIS P2 TSL 5 BASIC11.28□□□□□ -0.6
Pcdh1F7BJK1 Traf3ip2-201ENSMUST00000019987 2867 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Pcdh1F7BJK1 Wdr20rt-201ENSMUST00000046331 2228 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Pcdh1F7BJK1 Axl-202ENSMUST00000085948 3899 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.6
Pcdh1F7BJK1 Dlgap4-203ENSMUST00000099145 3402 ntAPPRIS P4 TSL 1 (best) BASIC11.28□□□□□ -0.6
Pcdh1F7BJK1 Rnf225-201ENSMUST00000045870 3239 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Pcdh1F7BJK1 AI464131-201ENSMUST00000054920 4173 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Pcdh1F7BJK1 6330537M06Rik-201ENSMUST00000212384 1642 ntBASIC11.27□□□□□ -0.6
Pcdh1F7BJK1 Nfya-212ENSMUST00000162460 3706 ntAPPRIS P3 TSL 1 (best) BASIC11.27□□□□□ -0.6
Pcdh1F7BJK1 Arhgap27-204ENSMUST00000107024 3976 ntAPPRIS ALT2 TSL 5 BASIC11.27□□□□□ -0.6
Pcdh1F7BJK1 Bckdha-201ENSMUST00000071329 1899 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
Pcdh1F7BJK1 Fnip2-203ENSMUST00000133154 7299 ntAPPRIS ALT2 TSL 5 BASIC11.27□□□□□ -0.6
Pcdh1F7BJK1 Kcnip4-207ENSMUST00000176191 2116 ntTSL 5 BASIC11.27□□□□□ -0.6
Pcdh1F7BJK1 Mbtd1-201ENSMUST00000063645 2138 ntTSL 1 (best) BASIC11.27□□□□□ -0.6
Pcdh1F7BJK1 Rdh8-201ENSMUST00000066387 1405 ntAPPRIS P1 TSL 2 BASIC11.27□□□□□ -0.6
Pcdh1F7BJK1 Chrdl1-204ENSMUST00000166406 2605 ntAPPRIS P3 TSL 1 (best) BASIC11.27□□□□□ -0.6
Pcdh1F7BJK1 Syne3-203ENSMUST00000109927 5263 ntAPPRIS ALT2 TSL 5 BASIC11.27□□□□□ -0.6
Pcdh1F7BJK1 Ttc23-202ENSMUST00000107470 1915 ntAPPRIS ALT2 TSL 5 BASIC11.27□□□□□ -0.6
Pcdh1F7BJK1 Zfp1-203ENSMUST00000212072 1930 ntTSL 1 (best) BASIC11.27□□□□□ -0.6
Pcdh1F7BJK1 Camta1-201ENSMUST00000049790 8423 ntAPPRIS P2 TSL 5 BASIC11.27□□□□□ -0.6
Pcdh1F7BJK1 Slc26a6-201ENSMUST00000098376 2402 ntAPPRIS ALT2 TSL 5 BASIC11.27□□□□□ -0.6
Pcdh1F7BJK1 Ttbk2-203ENSMUST00000085840 11152 ntAPPRIS P1 TSL 5 BASIC11.27□□□□□ -0.6
Pcdh1F7BJK1 Cad-201ENSMUST00000013773 7137 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
Pcdh1F7BJK1 Ube2a-201ENSMUST00000016452 1732 ntAPPRIS P3 TSL 1 (best) BASIC11.27□□□□□ -0.61
Pcdh1F7BJK1 Ddx46-202ENSMUST00000172272 5676 ntAPPRIS P2 TSL 5 BASIC11.27□□□□□ -0.61
Pcdh1F7BJK1 Ddx46-201ENSMUST00000099479 5664 ntAPPRIS ALT2 TSL 5 BASIC11.27□□□□□ -0.61
Pcdh1F7BJK1 Gm8038-201ENSMUST00000164674 2044 ntBASIC11.27□□□□□ -0.61
Retrieved 100 of 76,532 protein–RNA pairs in 31 ms