Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Cryba4-201ENSMUST00000086629 746 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Smc1aQ9CU62 Olfr521-201ENSMUST00000098263 967 ntAPPRIS P1 BASIC14.08□□□□□ -0.16
Smc1aQ9CU62 Rpe-201ENSMUST00000027157 2692 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Smc1aQ9CU62 Epb41l2-204ENSMUST00000217929 3621 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Smc1aQ9CU62 Tmem132a-202ENSMUST00000120524 3895 ntTSL 5 BASIC14.08□□□□□ -0.16
Smc1aQ9CU62 B4galnt3-203ENSMUST00000212457 2958 ntAPPRIS ALT2 TSL 5 BASIC14.08□□□□□ -0.16
Smc1aQ9CU62 Ppp6r3-202ENSMUST00000113997 4952 ntAPPRIS ALT1 TSL 5 BASIC14.08□□□□□ -0.16
Smc1aQ9CU62 Prex1-203ENSMUST00000109246 2386 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Smc1aQ9CU62 Prkar1b-203ENSMUST00000110890 2626 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Smc1aQ9CU62 Kif3b-201ENSMUST00000028977 5635 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Smc1aQ9CU62 Rdh19-201ENSMUST00000077530 1889 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Smc1aQ9CU62 Ncapd3-201ENSMUST00000073127 5499 ntAPPRIS P2 TSL 5 BASIC14.08□□□□□ -0.16
Smc1aQ9CU62 Psap-201ENSMUST00000004316 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
Smc1aQ9CU62 Plekhb1-204ENSMUST00000107045 1919 ntAPPRIS ALT1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Smc1aQ9CU62 Timd2-201ENSMUST00000055102 1941 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Smc1aQ9CU62 Tufm-201ENSMUST00000098048 1679 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Smc1aQ9CU62 Rab39-201ENSMUST00000068449 2971 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Smc1aQ9CU62 Arl13b-201ENSMUST00000089289 3528 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
Smc1aQ9CU62 Smad4-202ENSMUST00000114939 2233 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Smc1aQ9CU62 Prss8-202ENSMUST00000206124 1709 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Smc1aQ9CU62 Gm7104-201ENSMUST00000179741 2532 ntBASIC14.07□□□□□ -0.16
Smc1aQ9CU62 Palld-204ENSMUST00000121785 6349 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Smc1aQ9CU62 Dhx57-202ENSMUST00000086555 5077 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Smc1aQ9CU62 Tsku-202ENSMUST00000164726 2620 ntAPPRIS P1 TSL 2 BASIC14.07□□□□□ -0.16
Smc1aQ9CU62 Ercc2-202ENSMUST00000108460 3485 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Smc1aQ9CU62 Inca1-203ENSMUST00000108542 1080 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
Smc1aQ9CU62 Gm15236-201ENSMUST00000117309 379 ntBASIC14.07□□□□□ -0.16
Smc1aQ9CU62 9330198N18Rik-201ENSMUST00000146702 1247 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Smc1aQ9CU62 Gm12315-201ENSMUST00000151599 911 ntTSL 3 BASIC14.07□□□□□ -0.16
Smc1aQ9CU62 Psme1-202ENSMUST00000172738 681 ntTSL 5 BASIC14.07□□□□□ -0.16
Smc1aQ9CU62 4930516B21Rik-201ENSMUST00000181600 1195 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Smc1aQ9CU62 Gm29396-201ENSMUST00000185659 716 ntBASIC14.07□□□□□ -0.16
Smc1aQ9CU62 Gm38341-201ENSMUST00000195357 515 ntBASIC14.07□□□□□ -0.16
Smc1aQ9CU62 Gm44064-201ENSMUST00000204964 1087 ntBASIC14.07□□□□□ -0.16
Smc1aQ9CU62 CT033793.1-201ENSMUST00000216883 565 ntTSL 5 BASIC14.07□□□□□ -0.16
Smc1aQ9CU62 Gm36264-202ENSMUST00000221989 1142 ntTSL 5 BASIC14.07□□□□□ -0.16
Smc1aQ9CU62 Cts7-204ENSMUST00000225321 1257 ntBASIC14.07□□□□□ -0.16
Smc1aQ9CU62 Timm10-201ENSMUST00000028470 690 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Smc1aQ9CU62 Lats2-202ENSMUST00000038381 933 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Smc1aQ9CU62 Usmg5-201ENSMUST00000096014 341 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Smc1aQ9CU62 Acer1-201ENSMUST00000056113 2429 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Smc1aQ9CU62 Rnft2-202ENSMUST00000121369 4431 ntAPPRIS ALT1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Smc1aQ9CU62 Mtus1-202ENSMUST00000059115 6548 ntTSL 5 BASIC14.07□□□□□ -0.16
Smc1aQ9CU62 Fosb-205ENSMUST00000208326 3654 ntTSL 5 BASIC14.07□□□□□ -0.16
Smc1aQ9CU62 Catsper3-202ENSMUST00000109898 1311 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
Smc1aQ9CU62 Prkcd-203ENSMUST00000112203 1927 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Smc1aQ9CU62 Stard8-201ENSMUST00000036606 4963 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Smc1aQ9CU62 Eogt-201ENSMUST00000054344 4424 ntAPPRIS P2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Smc1aQ9CU62 Gulp1-203ENSMUST00000160854 1399 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Smc1aQ9CU62 Psmd13-208ENSMUST00000163610 1382 ntTSL 5 BASIC14.07□□□□□ -0.16
Smc1aQ9CU62 Gm18630-201ENSMUST00000222109 1397 ntBASIC14.07□□□□□ -0.16
Smc1aQ9CU62 Pnoc-202ENSMUST00000224594 1388 ntAPPRIS ALT2 BASIC14.07□□□□□ -0.16
Smc1aQ9CU62 Ercc2-201ENSMUST00000062831 3578 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Smc1aQ9CU62 Cog7-203ENSMUST00000205438 3355 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Smc1aQ9CU62 Abra-201ENSMUST00000054742 1762 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Smc1aQ9CU62 Pcdh8-204ENSMUST00000195355 3704 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
Smc1aQ9CU62 Gm17276-201ENSMUST00000180839 2782 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Smc1aQ9CU62 Bcs1l-203ENSMUST00000113733 1488 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Smc1aQ9CU62 Dbndd1-203ENSMUST00000177240 1463 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Smc1aQ9CU62 Ank2-203ENSMUST00000182008 2474 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Smc1aQ9CU62 Gm15684-201ENSMUST00000160605 1814 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Smc1aQ9CU62 E2f7-201ENSMUST00000073781 5473 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Smc1aQ9CU62 Sun2-201ENSMUST00000046259 3804 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
Smc1aQ9CU62 Arhgef40-202ENSMUST00000100639 4843 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
Smc1aQ9CU62 Pde4d-201ENSMUST00000074103 2167 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Smc1aQ9CU62 Ociad1-201ENSMUST00000031038 1523 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Smc1aQ9CU62 Myadm-203ENSMUST00000203328 1899 ntAPPRIS P1 TSL 2 BASIC14.06□□□□□ -0.16
Smc1aQ9CU62 Lims1-202ENSMUST00000020078 4327 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Smc1aQ9CU62 Kif13a-201ENSMUST00000056978 6866 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Smc1aQ9CU62 Ptprk-202ENSMUST00000218276 4754 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Smc1aQ9CU62 Sin3b-201ENSMUST00000004494 4115 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Smc1aQ9CU62 Ccr7-201ENSMUST00000103134 1978 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Smc1aQ9CU62 Herpud1-205ENSMUST00000161576 1952 ntAPPRIS P2 TSL 1 (best) BASIC14.06□□□□□ -0.16
Smc1aQ9CU62 Abhd6-203ENSMUST00000225234 1958 ntBASIC14.06□□□□□ -0.16
Smc1aQ9CU62 Eno2-216ENSMUST00000204896 1640 ntTSL 5 BASIC14.06□□□□□ -0.16
Smc1aQ9CU62 Rspo3-201ENSMUST00000092623 3085 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Smc1aQ9CU62 Timm10-202ENSMUST00000111631 564 ntAPPRIS P1 TSL 3 BASIC14.06□□□□□ -0.16
Smc1aQ9CU62 Gm14350-201ENSMUST00000116642 640 ntBASIC14.06□□□□□ -0.16
Smc1aQ9CU62 Rpl3-ps2-201ENSMUST00000117131 1214 ntBASIC14.06□□□□□ -0.16
Smc1aQ9CU62 Gm25261-201ENSMUST00000157416 134 ntBASIC14.06□□□□□ -0.16
Smc1aQ9CU62 Gm5850-201ENSMUST00000192923 1206 ntBASIC14.06□□□□□ -0.16
Smc1aQ9CU62 Gm43714-201ENSMUST00000198351 1204 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Smc1aQ9CU62 Gm33474-201ENSMUST00000199486 1231 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Smc1aQ9CU62 Gm18056-201ENSMUST00000207670 568 ntBASIC14.06□□□□□ -0.16
Smc1aQ9CU62 Gm18061-201ENSMUST00000208350 562 ntBASIC14.06□□□□□ -0.16
Smc1aQ9CU62 Gm18063-201ENSMUST00000208529 568 ntBASIC14.06□□□□□ -0.16
Smc1aQ9CU62 Gm18052-201ENSMUST00000208750 559 ntBASIC14.06□□□□□ -0.16
Smc1aQ9CU62 Tmem205-203ENSMUST00000213698 705 ntAPPRIS P1 TSL 3 BASIC14.06□□□□□ -0.16
Smc1aQ9CU62 AC134254.1-201ENSMUST00000221362 167 ntBASIC14.06□□□□□ -0.16
Smc1aQ9CU62 CT485787.1-201ENSMUST00000225617 968 ntBASIC14.06□□□□□ -0.16
Smc1aQ9CU62 Tmem116-201ENSMUST00000031405 1288 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
Smc1aQ9CU62 Cldnd2-201ENSMUST00000040227 664 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Smc1aQ9CU62 Nudt22-201ENSMUST00000041686 1000 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Smc1aQ9CU62 Ccdc126-202ENSMUST00000114491 2372 ntTSL 5 BASIC14.06□□□□□ -0.16
Smc1aQ9CU62 Ackr4-202ENSMUST00000076147 2389 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Smc1aQ9CU62 Ddx46-202ENSMUST00000172272 5676 ntAPPRIS P2 TSL 5 BASIC14.06□□□□□ -0.16
Smc1aQ9CU62 Ddx46-201ENSMUST00000099479 5664 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
Smc1aQ9CU62 Acvrl1-205ENSMUST00000120754 3506 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
Smc1aQ9CU62 Lin28a-201ENSMUST00000051674 3505 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Smc1aQ9CU62 Tfdp2-205ENSMUST00000179416 2408 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
Retrieved 100 of 76,532 protein–RNA pairs in 33.7 ms