Protein–RNA interactions for Protein: Q8VC31

Ccdc9, Coiled-coil domain-containing protein 9, mousemouse

Known RBP Predictions only

Length 543 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc9Q8VC31 Nsd3-208ENSMUST00000146919 3652 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Ccdc9Q8VC31 Inip-201ENSMUST00000095063 3237 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Ccdc9Q8VC31 Gtf3c1-204ENSMUST00000205659 6570 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
Ccdc9Q8VC31 Igf1-201ENSMUST00000062862 2292 ntTSL 2 BASIC15.1■□□□□ 0.01
Ccdc9Q8VC31 Fam110a-203ENSMUST00000109864 1591 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Ccdc9Q8VC31 Aldh16a1-206ENSMUST00000209963 3537 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Ccdc9Q8VC31 Gnb5-202ENSMUST00000213990 1803 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Ccdc9Q8VC31 Tcp10a-202ENSMUST00000128533 2589 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Ccdc9Q8VC31 Cacna1s-202ENSMUST00000112068 6018 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Ccdc9Q8VC31 Col9a1-202ENSMUST00000088349 3059 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Ccdc9Q8VC31 S100pbp-203ENSMUST00000106059 4084 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Ccdc9Q8VC31 Gm6756-201ENSMUST00000180647 1620 ntBASIC15.1■□□□□ 0.01
Ccdc9Q8VC31 C2-201ENSMUST00000025230 2641 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Ccdc9Q8VC31 Wnt7b-203ENSMUST00000167968 3408 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Ccdc9Q8VC31 Setd1a-201ENSMUST00000047075 6487 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
Ccdc9Q8VC31 A630075F10Rik-201ENSMUST00000180895 1913 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Ccdc9Q8VC31 Gm26640-201ENSMUST00000180809 3524 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Ccdc9Q8VC31 Adgrl3-201ENSMUST00000036068 6203 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
Ccdc9Q8VC31 Adgrl3-202ENSMUST00000072521 6203 ntAPPRIS P3 TSL 5 BASIC15.09■□□□□ 0.01
Ccdc9Q8VC31 Arhgap4-201ENSMUST00000064376 3353 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
Ccdc9Q8VC31 Pnck-201ENSMUST00000002087 1536 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Ccdc9Q8VC31 Far2-201ENSMUST00000032443 3480 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Ccdc9Q8VC31 Gpr173-201ENSMUST00000070316 4855 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Ccdc9Q8VC31 Mmab-202ENSMUST00000112245 644 ntTSL 3 BASIC15.09■□□□□ 0.01
Ccdc9Q8VC31 Gm6539-201ENSMUST00000119157 1064 ntBASIC15.09■□□□□ 0.01
Ccdc9Q8VC31 Rab11fip4os2-201ENSMUST00000123067 689 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Ccdc9Q8VC31 Gm6736-201ENSMUST00000166583 948 ntBASIC15.09■□□□□ 0.01
Ccdc9Q8VC31 Mpped1-210ENSMUST00000172115 795 ntTSL 3 BASIC15.09■□□□□ 0.01
Ccdc9Q8VC31 Mpped1-211ENSMUST00000172398 795 ntTSL 3 BASIC15.09■□□□□ 0.01
Ccdc9Q8VC31 Nnat-209ENSMUST00000173793 386 ntTSL 5 BASIC15.09■□□□□ 0.01
Ccdc9Q8VC31 Rabep1-208ENSMUST00000179114 1264 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Ccdc9Q8VC31 Arfgap1-213ENSMUST00000184394 1209 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
Ccdc9Q8VC31 1700128F08Rik-202ENSMUST00000213708 717 ntBASIC15.09■□□□□ 0.01
Ccdc9Q8VC31 Gm18934-201ENSMUST00000216671 1044 ntBASIC15.09■□□□□ 0.01
Ccdc9Q8VC31 Trem2-201ENSMUST00000024791 1088 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
Ccdc9Q8VC31 3110079O15Rik-201ENSMUST00000027476 478 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Ccdc9Q8VC31 Tnp2-201ENSMUST00000051297 549 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Ccdc9Q8VC31 Chchd10-201ENSMUST00000058906 939 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Ccdc9Q8VC31 Asph-202ENSMUST00000078139 6694 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
Ccdc9Q8VC31 Ptger4-201ENSMUST00000047379 3264 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
Ccdc9Q8VC31 Rasgrp4-210ENSMUST00000203070 3008 ntTSL 5 BASIC15.09■□□□□ 0.01
Ccdc9Q8VC31 Srrt-201ENSMUST00000040873 3024 ntAPPRIS P3 TSL 5 BASIC15.09■□□□□ 0.01
Ccdc9Q8VC31 Srp54a-207ENSMUST00000110708 3646 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Ccdc9Q8VC31 Arhgef2-203ENSMUST00000170653 4238 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Ccdc9Q8VC31 Fggy-201ENSMUST00000043335 1910 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Ccdc9Q8VC31 Cnot10-201ENSMUST00000070117 2853 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Ccdc9Q8VC31 Gm5766-201ENSMUST00000160520 1977 ntBASIC15.09■□□□□ 0.01
Ccdc9Q8VC31 Gm34016-201ENSMUST00000222678 1384 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Ccdc9Q8VC31 Pcdhb22-202ENSMUST00000192409 6609 ntAPPRIS P1 BASIC15.09■□□□□ 0.01
Ccdc9Q8VC31 Arfgap1-202ENSMUST00000108859 2639 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Ccdc9Q8VC31 Tesmin-202ENSMUST00000127142 1714 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Ccdc9Q8VC31 Grin1-208ENSMUST00000114318 3920 ntTSL 5 BASIC15.09■□□□□ 0.01
Ccdc9Q8VC31 Sord-201ENSMUST00000110551 2352 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Ccdc9Q8VC31 Svop-201ENSMUST00000058472 3379 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
Ccdc9Q8VC31 Bin3-201ENSMUST00000022680 1767 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
Ccdc9Q8VC31 Lnx1-203ENSMUST00000113531 3098 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
Ccdc9Q8VC31 Med12l-203ENSMUST00000040846 3747 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
Ccdc9Q8VC31 Ddx10-201ENSMUST00000065630 3128 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
Ccdc9Q8VC31 Mtmr7-202ENSMUST00000048898 2488 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
Ccdc9Q8VC31 Snx10-201ENSMUST00000049152 2480 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
Ccdc9Q8VC31 Prx-201ENSMUST00000065487 4497 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
Ccdc9Q8VC31 BC004004-201ENSMUST00000064709 2803 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
Ccdc9Q8VC31 Ap3s1-201ENSMUST00000025357 1520 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
Ccdc9Q8VC31 Tcf25-202ENSMUST00000108840 2582 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
Ccdc9Q8VC31 Fut1-201ENSMUST00000008605 2580 ntAPPRIS P3 TSL 1 (best) BASIC15.08■□□□□ 0
Ccdc9Q8VC31 Txndc5-204ENSMUST00000162075 2619 ntTSL 1 (best) BASIC15.08■□□□□ 0
Ccdc9Q8VC31 Napsa-201ENSMUST00000002274 1560 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Ccdc9Q8VC31 Lrtm2-204ENSMUST00000168793 3407 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0
Ccdc9Q8VC31 Olfr541-203ENSMUST00000210357 1642 ntAPPRIS P1 TSL 2 BASIC15.08■□□□□ 0
Ccdc9Q8VC31 Gm36500-201ENSMUST00000221821 1626 ntTSL 5 BASIC15.08■□□□□ 0
Ccdc9Q8VC31 Tut1-201ENSMUST00000096239 2747 ntAPPRIS P1 TSL 2 BASIC15.08■□□□□ 0
Ccdc9Q8VC31 Ern1-202ENSMUST00000106799 660 ntTSL 1 (best) BASIC15.08■□□□□ 0
Ccdc9Q8VC31 Tex22-202ENSMUST00000109729 735 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Ccdc9Q8VC31 Gm14822-201ENSMUST00000122247 291 ntBASIC15.08■□□□□ 0
Ccdc9Q8VC31 Gm11535-201ENSMUST00000145517 778 ntTSL 3 BASIC15.08■□□□□ 0
Ccdc9Q8VC31 Ccdc24-209ENSMUST00000171052 891 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0
Ccdc9Q8VC31 AC158529.1-201ENSMUST00000223618 239 ntBASIC15.08■□□□□ 0
Ccdc9Q8VC31 Ggn-201ENSMUST00000033886 588 ntTSL 1 (best) BASIC15.08■□□□□ 0
Ccdc9Q8VC31 Lce3b-201ENSMUST00000046234 562 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Ccdc9Q8VC31 Gnb1l-202ENSMUST00000090086 3549 ntAPPRIS P3 TSL 1 (best) BASIC15.08■□□□□ 0
Ccdc9Q8VC31 Matn2-202ENSMUST00000163455 3577 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0
Ccdc9Q8VC31 Gm6018-201ENSMUST00000216090 1306 ntBASIC15.08■□□□□ 0
Ccdc9Q8VC31 E130308A19Rik-201ENSMUST00000052420 3205 ntTSL 1 (best) BASIC15.08■□□□□ 0
Ccdc9Q8VC31 Dysf-216ENSMUST00000204987 6474 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0
Ccdc9Q8VC31 G630064G18Rik-201ENSMUST00000209814 1795 ntTSL 1 (best) BASIC15.08■□□□□ 0
Ccdc9Q8VC31 Srrt-212ENSMUST00000199243 2988 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
Ccdc9Q8VC31 Rac1-201ENSMUST00000080537 4159 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Ccdc9Q8VC31 Avpr2-201ENSMUST00000033765 1812 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Ccdc9Q8VC31 Zpbp2-201ENSMUST00000017339 1455 ntAPPRIS P3 TSL 1 (best) BASIC15.08■□□□□ 0
Ccdc9Q8VC31 Fer-202ENSMUST00000038080 2365 ntTSL 1 (best) BASIC15.07■□□□□ 0
Ccdc9Q8VC31 Trim45-201ENSMUST00000037409 4612 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
Ccdc9Q8VC31 Chodl-203ENSMUST00000114216 1550 ntTSL 1 (best) BASIC15.07■□□□□ 0
Ccdc9Q8VC31 Atg7-210ENSMUST00000182793 2459 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
Ccdc9Q8VC31 Camsap3-209ENSMUST00000207970 3817 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
Ccdc9Q8VC31 Nipbl-201ENSMUST00000052965 8815 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Ccdc9Q8VC31 Sfn-201ENSMUST00000057311 1613 ntAPPRIS P1 BASIC15.07■□□□□ 0
Ccdc9Q8VC31 Fermt3-201ENSMUST00000040772 2587 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Ccdc9Q8VC31 Hpcal4-201ENSMUST00000059667 4931 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Ccdc9Q8VC31 Pfkfb3-204ENSMUST00000114844 2107 ntTSL 5 BASIC15.07■□□□□ 0
Ccdc9Q8VC31 Mapre2-203ENSMUST00000118826 3052 ntTSL 1 (best) BASIC15.07■□□□□ 0
Retrieved 100 of 76,532 protein–RNA pairs in 51.2 ms