Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Pax6-203ENSMUST00000111082 3116 ntAPPRIS ALT1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Brf1Q8CFK2 Jmjd8-205ENSMUST00000133595 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Brf1Q8CFK2 Ggn-202ENSMUST00000098609 2653 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Brf1Q8CFK2 Prpf40a-206ENSMUST00000209364 2833 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
Brf1Q8CFK2 Cxcr5-204ENSMUST00000215293 2846 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Brf1Q8CFK2 Gm26531-201ENSMUST00000181727 1967 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Brf1Q8CFK2 Mapk3-203ENSMUST00000091328 1716 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Brf1Q8CFK2 Fam198a-204ENSMUST00000215990 2149 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Brf1Q8CFK2 Sec61g-203ENSMUST00000109643 1862 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Brf1Q8CFK2 H2-Ob-202ENSMUST00000167280 1878 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Brf1Q8CFK2 Tfe3-202ENSMUST00000079542 3163 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Brf1Q8CFK2 Kifc1-201ENSMUST00000114361 2260 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
Brf1Q8CFK2 Gm6034-201ENSMUST00000097331 1633 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Brf1Q8CFK2 Ppp1r9b-202ENSMUST00000107748 3095 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Brf1Q8CFK2 Usp20-201ENSMUST00000061544 1360 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Brf1Q8CFK2 Sidt1-201ENSMUST00000047446 4279 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Brf1Q8CFK2 Rai1-202ENSMUST00000090806 7217 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Brf1Q8CFK2 Zfp1-203ENSMUST00000212072 1930 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Brf1Q8CFK2 Irak1-203ENSMUST00000101458 2052 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
Brf1Q8CFK2 Gm2237-202ENSMUST00000170694 2090 ntAPPRIS P5 TSL 5 BASIC15.14■□□□□ 0.01
Brf1Q8CFK2 Tnfrsf18-202ENSMUST00000103173 1189 ntAPPRIS P4 TSL 1 (best) BASIC15.14■□□□□ 0.01
Brf1Q8CFK2 Gm13786-201ENSMUST00000122371 333 ntBASIC15.14■□□□□ 0.01
Brf1Q8CFK2 D630024D03Rik-201ENSMUST00000126265 720 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Brf1Q8CFK2 C130026I21Rik-205ENSMUST00000161267 652 ntAPPRIS ALT2 TSL 3 BASIC15.14■□□□□ 0.01
Brf1Q8CFK2 Pcgf1-202ENSMUST00000165164 918 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Brf1Q8CFK2 Agtpbp1-213ENSMUST00000167096 508 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Brf1Q8CFK2 Gm26871-201ENSMUST00000180593 700 ntTSL 3 BASIC15.14■□□□□ 0.01
Brf1Q8CFK2 Mospd4-201ENSMUST00000180618 576 ntBASIC15.14■□□□□ 0.01
Brf1Q8CFK2 Gm27243-201ENSMUST00000183964 521 ntBASIC15.14■□□□□ 0.01
Brf1Q8CFK2 Gm42627-201ENSMUST00000197347 224 ntBASIC15.14■□□□□ 0.01
Brf1Q8CFK2 Gm43630-201ENSMUST00000201550 776 ntBASIC15.14■□□□□ 0.01
Brf1Q8CFK2 Olfr284-202ENSMUST00000206647 966 ntBASIC15.14■□□□□ 0.01
Brf1Q8CFK2 4933436H12Rik-201ENSMUST00000207304 658 ntTSL 5 BASIC15.14■□□□□ 0.01
Brf1Q8CFK2 Gm10608-202ENSMUST00000213924 676 ntBASIC15.14■□□□□ 0.01
Brf1Q8CFK2 Gm39404-201ENSMUST00000216350 313 ntBASIC15.14■□□□□ 0.01
Brf1Q8CFK2 Timm9-203ENSMUST00000220482 859 ntAPPRIS P1 TSL 3 BASIC15.14■□□□□ 0.01
Brf1Q8CFK2 AC125209.1-201ENSMUST00000225812 766 ntBASIC15.14■□□□□ 0.01
Brf1Q8CFK2 Krtap19-9a-201ENSMUST00000062005 168 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
Brf1Q8CFK2 Adam22-207ENSMUST00000115388 9161 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
Brf1Q8CFK2 Ppp2r5c-204ENSMUST00000221074 1971 ntTSL 5 BASIC15.14■□□□□ 0.01
Brf1Q8CFK2 Tmem168-201ENSMUST00000031554 4587 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Brf1Q8CFK2 Mest-202ENSMUST00000124665 2665 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Brf1Q8CFK2 Dnpep-203ENSMUST00000185419 2833 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Brf1Q8CFK2 Thtpa-201ENSMUST00000050575 2830 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Brf1Q8CFK2 0610040F04Rik-201ENSMUST00000137478 1734 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Brf1Q8CFK2 Cebpd-201ENSMUST00000096232 3746 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
Brf1Q8CFK2 Mkrn1-201ENSMUST00000031985 3046 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
Brf1Q8CFK2 Dppa4-201ENSMUST00000050705 1378 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
Brf1Q8CFK2 Rgp1-202ENSMUST00000107886 5888 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
Brf1Q8CFK2 Pgap2-204ENSMUST00000120879 2141 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Brf1Q8CFK2 Map4k1-203ENSMUST00000208227 2720 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Brf1Q8CFK2 Map4k1-201ENSMUST00000085835 2724 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Brf1Q8CFK2 Arhgap11a-201ENSMUST00000102545 4958 ntAPPRIS P2 TSL 5 BASIC15.13■□□□□ 0.01
Brf1Q8CFK2 Plcg1-203ENSMUST00000109462 5107 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
Brf1Q8CFK2 Vcl-201ENSMUST00000022369 5267 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Brf1Q8CFK2 Gm13342-201ENSMUST00000121055 207 ntBASIC15.13■□□□□ 0.01
Brf1Q8CFK2 Acyp1-204ENSMUST00000121930 634 ntTSL 2 BASIC15.13■□□□□ 0.01
Brf1Q8CFK2 Gm12349-201ENSMUST00000153030 657 ntTSL 3 BASIC15.13■□□□□ 0.01
Brf1Q8CFK2 Gm6013-201ENSMUST00000212264 699 ntBASIC15.13■□□□□ 0.01
Brf1Q8CFK2 AC125350.2-201ENSMUST00000224737 727 ntBASIC15.13■□□□□ 0.01
Brf1Q8CFK2 Mlana-201ENSMUST00000025719 623 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Brf1Q8CFK2 Saa3-201ENSMUST00000006956 555 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Brf1Q8CFK2 Krit1-201ENSMUST00000080085 2930 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Brf1Q8CFK2 Ms4a15-201ENSMUST00000087923 1713 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Brf1Q8CFK2 Hid1-202ENSMUST00000106542 3276 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
Brf1Q8CFK2 Gm26819-201ENSMUST00000180656 5128 ntTSL 5 BASIC15.13■□□□□ 0.01
Brf1Q8CFK2 Igbp1b-201ENSMUST00000054786 1456 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
Brf1Q8CFK2 Gpr18-201ENSMUST00000055475 1498 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Brf1Q8CFK2 Ccdc162-203ENSMUST00000099932 2742 ntTSL 5 BASIC15.13■□□□□ 0.01
Brf1Q8CFK2 Nxph1-201ENSMUST00000060369 2578 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Brf1Q8CFK2 Kif16b-201ENSMUST00000043589 6383 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
Brf1Q8CFK2 Sp3-202ENSMUST00000102689 4181 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Brf1Q8CFK2 Dio1-201ENSMUST00000082426 1690 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Brf1Q8CFK2 Kcp-203ENSMUST00000101614 4885 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Brf1Q8CFK2 Mpzl2-201ENSMUST00000034600 3107 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Brf1Q8CFK2 Ephb6-201ENSMUST00000114732 3762 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Brf1Q8CFK2 Msh6-201ENSMUST00000005503 4254 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Brf1Q8CFK2 Rxfp3-201ENSMUST00000058007 4275 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
Brf1Q8CFK2 Phldb1-218ENSMUST00000156918 3485 ntTSL 5 BASIC15.12■□□□□ 0.01
Brf1Q8CFK2 Efemp2-209ENSMUST00000167371 1382 ntTSL 5 BASIC15.12■□□□□ 0.01
Brf1Q8CFK2 Exog-201ENSMUST00000035094 3832 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Brf1Q8CFK2 Trim9-209ENSMUST00000222316 3049 ntTSL 2 BASIC15.12■□□□□ 0.01
Brf1Q8CFK2 C77080-203ENSMUST00000106051 5049 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Brf1Q8CFK2 Tmem206-201ENSMUST00000027940 2246 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Brf1Q8CFK2 Dysf-213ENSMUST00000203803 6590 ntTSL 5 BASIC15.12■□□□□ 0.01
Brf1Q8CFK2 Reep2-201ENSMUST00000043484 1926 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Brf1Q8CFK2 Styxl1-202ENSMUST00000111161 963 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Brf1Q8CFK2 Gstt1-202ENSMUST00000120177 1105 ntTSL 2 BASIC15.12■□□□□ 0.01
Brf1Q8CFK2 Ggnbp1-202ENSMUST00000122106 1107 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
Brf1Q8CFK2 Serf1-203ENSMUST00000132053 516 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Brf1Q8CFK2 Nsd3-203ENSMUST00000136107 3818 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Brf1Q8CFK2 Gm29396-201ENSMUST00000185659 716 ntBASIC15.12■□□□□ 0.01
Brf1Q8CFK2 Gm45720-201ENSMUST00000211881 484 ntTSL 3 BASIC15.12■□□□□ 0.01
Brf1Q8CFK2 AC158605.1-202ENSMUST00000217860 540 ntTSL 2 BASIC15.12■□□□□ 0.01
Brf1Q8CFK2 Rwdd3-201ENSMUST00000039761 1145 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Brf1Q8CFK2 Taar7e-201ENSMUST00000092656 1077 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
Brf1Q8CFK2 Gm37737-201ENSMUST00000195013 1638 ntBASIC15.12■□□□□ 0.01
Brf1Q8CFK2 Ints3-202ENSMUST00000071488 4038 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Brf1Q8CFK2 Trim26-205ENSMUST00000130367 3187 ntAPPRIS P2 TSL 5 BASIC15.12■□□□□ 0.01
Brf1Q8CFK2 Gm43721-201ENSMUST00000199677 2313 ntBASIC15.12■□□□□ 0.01
Retrieved 100 of 76,532 protein–RNA pairs in 31.5 ms