Protein–RNA interactions for Protein: Q6PFD9

Nup98, Nuclear pore complex protein Nup98-Nup96, mousemouse

Known RBP Predictions only

Length 1,816 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nup98Q6PFD9 Fam129a-203ENSMUST00000111875 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
Nup98Q6PFD9 Gm13391-202ENSMUST00000147685 816 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Nup98Q6PFD9 Gm22144-201ENSMUST00000157402 102 ntBASIC14.55□□□□□ -0.08
Nup98Q6PFD9 Gm4310-201ENSMUST00000177847 889 ntBASIC14.55□□□□□ -0.08
Nup98Q6PFD9 Ccl19-ps3-201ENSMUST00000179634 324 ntBASIC14.55□□□□□ -0.08
Nup98Q6PFD9 Gm12407-201ENSMUST00000180219 324 ntBASIC14.55□□□□□ -0.08
Nup98Q6PFD9 Gm3508-201ENSMUST00000186012 792 ntBASIC14.55□□□□□ -0.08
Nup98Q6PFD9 A630035G10Rik-202ENSMUST00000194468 1065 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Nup98Q6PFD9 AC162938.2-204ENSMUST00000216455 984 ntTSL 5 BASIC14.55□□□□□ -0.08
Nup98Q6PFD9 AC135469.1-201ENSMUST00000225984 772 ntBASIC14.55□□□□□ -0.08
Nup98Q6PFD9 Rdh16f2-201ENSMUST00000092058 1265 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Nup98Q6PFD9 Secisbp2-201ENSMUST00000040117 3328 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Nup98Q6PFD9 Map1lc3b-201ENSMUST00000034270 2532 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Nup98Q6PFD9 Shank3-202ENSMUST00000066545 4702 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Nup98Q6PFD9 Psap-204ENSMUST00000177779 2657 ntAPPRIS ALT2 TSL 5 BASIC14.55□□□□□ -0.08
Nup98Q6PFD9 Psap-205ENSMUST00000179238 2657 ntAPPRIS P3 TSL 5 BASIC14.55□□□□□ -0.08
Nup98Q6PFD9 Psap-201ENSMUST00000004316 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
Nup98Q6PFD9 Trappc9-203ENSMUST00000168191 3127 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
Nup98Q6PFD9 Dlgap3-201ENSMUST00000046659 3884 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Nup98Q6PFD9 B3galnt2-201ENSMUST00000099747 3892 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Nup98Q6PFD9 Atg4c-203ENSMUST00000180278 2792 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
Nup98Q6PFD9 D230025D16Rik-201ENSMUST00000034361 2916 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Nup98Q6PFD9 Pdgfc-201ENSMUST00000029652 3521 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Nup98Q6PFD9 Arsg-202ENSMUST00000106696 1508 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Nup98Q6PFD9 Rnh1-204ENSMUST00000210314 1658 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
Nup98Q6PFD9 Cdk7-201ENSMUST00000091299 1988 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Nup98Q6PFD9 Ggt1-208ENSMUST00000134503 2140 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Nup98Q6PFD9 Pdxdc1-204ENSMUST00000115804 2880 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
Nup98Q6PFD9 Irf9-205ENSMUST00000138037 2343 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
Nup98Q6PFD9 Acot6-202ENSMUST00000222921 3622 ntBASIC14.55□□□□□ -0.08
Nup98Q6PFD9 AC173482.6-201ENSMUST00000225889 1741 ntBASIC14.55□□□□□ -0.08
Nup98Q6PFD9 Rusc1-202ENSMUST00000090929 3706 ntAPPRIS P4 TSL 1 (best) BASIC14.55□□□□□ -0.08
Nup98Q6PFD9 Hsd3b4-201ENSMUST00000179429 1575 ntAPPRIS P1 TSL 2 BASIC14.55□□□□□ -0.08
Nup98Q6PFD9 Gm10681-203ENSMUST00000186215 1575 ntAPPRIS P1 TSL 2 BASIC14.55□□□□□ -0.08
Nup98Q6PFD9 Fam71f1-201ENSMUST00000090487 1584 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Nup98Q6PFD9 Gm22711-201ENSMUST00000116890 133 ntBASIC14.55□□□□□ -0.08
Nup98Q6PFD9 Gm3150-201ENSMUST00000166418 204 ntBASIC14.55□□□□□ -0.08
Nup98Q6PFD9 Chtf8-203ENSMUST00000176090 615 ntTSL 5 BASIC14.55□□□□□ -0.08
Nup98Q6PFD9 Gm9540-201ENSMUST00000188230 478 ntBASIC14.55□□□□□ -0.08
Nup98Q6PFD9 Gm28516-201ENSMUST00000190257 663 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Nup98Q6PFD9 Gm38117-201ENSMUST00000194653 939 ntBASIC14.55□□□□□ -0.08
Nup98Q6PFD9 Gng8-204ENSMUST00000205716 432 ntAPPRIS P1 TSL 3 BASIC14.55□□□□□ -0.08
Nup98Q6PFD9 AC166992.1-201ENSMUST00000216356 565 ntBASIC14.55□□□□□ -0.08
Nup98Q6PFD9 AC101677.2-201ENSMUST00000218733 741 ntTSL 3 BASIC14.55□□□□□ -0.08
Nup98Q6PFD9 Prss52-201ENSMUST00000022537 1064 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Nup98Q6PFD9 Caprin2-202ENSMUST00000111569 3697 ntAPPRIS P2 TSL 1 (best) BASIC14.55□□□□□ -0.08
Nup98Q6PFD9 Hs3st3b1-201ENSMUST00000094103 4911 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Nup98Q6PFD9 Chrna9-201ENSMUST00000031108 1843 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Nup98Q6PFD9 Adamts14-201ENSMUST00000092486 5188 ntAPPRIS P2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Nup98Q6PFD9 Ip6k3-201ENSMUST00000025046 2307 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Nup98Q6PFD9 Fank1-201ENSMUST00000065359 2004 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Nup98Q6PFD9 Rock1-201ENSMUST00000067947 6187 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
Nup98Q6PFD9 Lrp8os2-204ENSMUST00000188737 3078 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Nup98Q6PFD9 Apon-202ENSMUST00000218722 1747 ntAPPRIS P1 BASIC14.54□□□□□ -0.08
Nup98Q6PFD9 Prkar1b-203ENSMUST00000110890 2626 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Nup98Q6PFD9 Pcgf2-202ENSMUST00000103148 1438 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
Nup98Q6PFD9 Rab13-202ENSMUST00000107373 1415 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Nup98Q6PFD9 Rec8-201ENSMUST00000002395 2184 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Nup98Q6PFD9 Ccl27a-203ENSMUST00000108033 428 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Nup98Q6PFD9 Wdr45-206ENSMUST00000116634 1250 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
Nup98Q6PFD9 Gm6485-201ENSMUST00000160676 439 ntBASIC14.54□□□□□ -0.08
Nup98Q6PFD9 1110038B12Rik-203ENSMUST00000173070 434 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Nup98Q6PFD9 Qdpr-209ENSMUST00000198258 1172 ntTSL 5 BASIC14.54□□□□□ -0.08
Nup98Q6PFD9 Rps12-208ENSMUST00000220070 494 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Nup98Q6PFD9 AC127270.1-201ENSMUST00000221441 491 ntTSL 3 BASIC14.54□□□□□ -0.08
Nup98Q6PFD9 AC154290.1-201ENSMUST00000223786 1240 ntBASIC14.54□□□□□ -0.08
Nup98Q6PFD9 Podn-202ENSMUST00000106708 2947 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Nup98Q6PFD9 Per3-201ENSMUST00000103204 5999 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Nup98Q6PFD9 Gm43447-201ENSMUST00000198471 1535 ntBASIC14.54□□□□□ -0.08
Nup98Q6PFD9 Slc25a21-205ENSMUST00000217690 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Nup98Q6PFD9 Cdkn2aip-201ENSMUST00000038738 3464 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Nup98Q6PFD9 Prrt3-204ENSMUST00000205075 1956 ntAPPRIS ALT2 TSL 2 BASIC14.54□□□□□ -0.08
Nup98Q6PFD9 Ccnj-201ENSMUST00000025983 3819 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Nup98Q6PFD9 Slc24a4-201ENSMUST00000079020 2337 ntAPPRIS P2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Nup98Q6PFD9 Chrnd-202ENSMUST00000186373 2949 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Nup98Q6PFD9 Tsc22d2-201ENSMUST00000099090 9799 ntAPPRIS P3 TSL 3 BASIC14.53□□□□□ -0.08
Nup98Q6PFD9 Mfrp-202ENSMUST00000161381 4254 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Nup98Q6PFD9 Angel2-203ENSMUST00000110899 3673 ntTSL 5 BASIC14.53□□□□□ -0.08
Nup98Q6PFD9 Gm9530-201ENSMUST00000181160 3281 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Nup98Q6PFD9 Tspan15-201ENSMUST00000047883 3638 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Nup98Q6PFD9 Tmem132c-201ENSMUST00000119026 5134 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Nup98Q6PFD9 Atp6v1b1-201ENSMUST00000006431 1999 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Nup98Q6PFD9 Rasgrp1-201ENSMUST00000102534 5229 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
Nup98Q6PFD9 Cstad-201ENSMUST00000102853 819 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Nup98Q6PFD9 Ift20-202ENSMUST00000108275 582 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Nup98Q6PFD9 Gm44793-201ENSMUST00000136923 582 ntTSL 2 BASIC14.53□□□□□ -0.08
Nup98Q6PFD9 Gm13523-201ENSMUST00000151820 488 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Nup98Q6PFD9 Mir7032-201ENSMUST00000185154 79 ntBASIC14.53□□□□□ -0.08
Nup98Q6PFD9 Gm44980-201ENSMUST00000205826 314 ntBASIC14.53□□□□□ -0.08
Nup98Q6PFD9 AC098716.1-201ENSMUST00000213527 703 ntBASIC14.53□□□□□ -0.08
Nup98Q6PFD9 Mia-201ENSMUST00000071986 566 ntAPPRIS P2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Nup98Q6PFD9 Samd11-202ENSMUST00000217934 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Nup98Q6PFD9 Neo1-201ENSMUST00000068664 7379 ntAPPRIS P2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Nup98Q6PFD9 Atp13a2-201ENSMUST00000037055 3956 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
Nup98Q6PFD9 Phkg2-201ENSMUST00000033086 1570 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Nup98Q6PFD9 Ntsr1-202ENSMUST00000170448 2594 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Nup98Q6PFD9 Gm26732-201ENSMUST00000181807 2771 ntTSL 5 BASIC14.53□□□□□ -0.08
Nup98Q6PFD9 Ccdc88c-202ENSMUST00000085096 6313 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
Nup98Q6PFD9 Gm853-201ENSMUST00000023884 2314 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Nup98Q6PFD9 Gm9866-202ENSMUST00000182473 1882 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Retrieved 100 of 76,532 protein–RNA pairs in 54.5 ms