Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Upk2-201ENSMUST00000047740 1083 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Sh3rf1Q69ZI1 9430041J12Rik-201ENSMUST00000050989 534 ntBASIC12.76□□□□□ -0.37
Sh3rf1Q69ZI1 Rnf113a2-201ENSMUST00000183146 1383 ntAPPRIS P1 BASIC12.76□□□□□ -0.37
Sh3rf1Q69ZI1 Flywch1-201ENSMUST00000045517 2798 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Sh3rf1Q69ZI1 Ints1-201ENSMUST00000072607 7102 ntAPPRIS ALT2 TSL 5 BASIC12.76□□□□□ -0.37
Sh3rf1Q69ZI1 Golim4-202ENSMUST00000117242 4551 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
Sh3rf1Q69ZI1 Acoxl-202ENSMUST00000110344 1573 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Sh3rf1Q69ZI1 Gm15336-201ENSMUST00000128894 1571 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Sh3rf1Q69ZI1 Gm10339-203ENSMUST00000225409 1671 ntBASIC12.76□□□□□ -0.37
Sh3rf1Q69ZI1 Cidec-201ENSMUST00000032416 1703 ntAPPRIS P2 TSL 1 (best) BASIC12.76□□□□□ -0.37
Sh3rf1Q69ZI1 Pparg-204ENSMUST00000203732 1826 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Sh3rf1Q69ZI1 Rab10os-203ENSMUST00000178074 4006 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Sh3rf1Q69ZI1 Gm44094-201ENSMUST00000204703 2030 ntBASIC12.76□□□□□ -0.37
Sh3rf1Q69ZI1 Eogt-201ENSMUST00000054344 4424 ntAPPRIS P2 TSL 1 (best) BASIC12.76□□□□□ -0.37
Sh3rf1Q69ZI1 Dnajc14-207ENSMUST00000219508 2298 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Sh3rf1Q69ZI1 Bdp1-201ENSMUST00000038104 9921 ntAPPRIS P2 TSL 5 BASIC12.76□□□□□ -0.37
Sh3rf1Q69ZI1 Sin3a-208ENSMUST00000168678 5206 ntAPPRIS P3 TSL 1 (best) BASIC12.75□□□□□ -0.37
Sh3rf1Q69ZI1 Iqcc-201ENSMUST00000046675 2639 ntAPPRIS P2 TSL 2 BASIC12.75□□□□□ -0.37
Sh3rf1Q69ZI1 Rara-201ENSMUST00000068133 3384 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Sh3rf1Q69ZI1 Sv2a-201ENSMUST00000035371 4334 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Sh3rf1Q69ZI1 Arhgap11a-201ENSMUST00000102545 4958 ntAPPRIS P2 TSL 5 BASIC12.75□□□□□ -0.37
Sh3rf1Q69ZI1 Sdf4-201ENSMUST00000050078 5177 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Sh3rf1Q69ZI1 Gm28043-201ENSMUST00000130871 6521 ntAPPRIS P1 TSL 2 BASIC12.75□□□□□ -0.37
Sh3rf1Q69ZI1 Prrx1-204ENSMUST00000174397 6527 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Sh3rf1Q69ZI1 Fyb2-201ENSMUST00000106803 3136 ntAPPRIS P2 TSL 1 (best) BASIC12.75□□□□□ -0.37
Sh3rf1Q69ZI1 Fmo1-202ENSMUST00000111518 1506 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Sh3rf1Q69ZI1 Cntf-201ENSMUST00000112933 1073 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Sh3rf1Q69ZI1 Dab2ip-206ENSMUST00000112987 6287 ntAPPRIS ALT2 TSL 5 BASIC12.75□□□□□ -0.37
Sh3rf1Q69ZI1 Gm6447-201ENSMUST00000118905 835 ntBASIC12.75□□□□□ -0.37
Sh3rf1Q69ZI1 Gm11400-201ENSMUST00000120853 1214 ntBASIC12.75□□□□□ -0.37
Sh3rf1Q69ZI1 Zfp819-203ENSMUST00000120935 2156 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Sh3rf1Q69ZI1 Gm42420-201ENSMUST00000126621 634 ntAPPRIS P1 TSL 3 BASIC12.75□□□□□ -0.37
Sh3rf1Q69ZI1 2610507I01Rik-201ENSMUST00000154354 1360 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Sh3rf1Q69ZI1 Gm11754-201ENSMUST00000156576 661 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Sh3rf1Q69ZI1 Nxph1-202ENSMUST00000160300 2815 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Sh3rf1Q69ZI1 Gm16315-201ENSMUST00000163009 783 ntTSL 3 BASIC12.75□□□□□ -0.37
Sh3rf1Q69ZI1 Rwdd3-209ENSMUST00000170781 1111 ntTSL 5 BASIC12.75□□□□□ -0.37
Sh3rf1Q69ZI1 Gstt3-201ENSMUST00000001715 1880 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Sh3rf1Q69ZI1 Dnm3os-203ENSMUST00000185878 557 ntTSL 5 BASIC12.75□□□□□ -0.37
Sh3rf1Q69ZI1 Gm28380-201ENSMUST00000188800 385 ntTSL 5 BASIC12.75□□□□□ -0.37
Sh3rf1Q69ZI1 E230020A03Rik-201ENSMUST00000194646 2386 ntBASIC12.75□□□□□ -0.37
Sh3rf1Q69ZI1 Hsd3b4-202ENSMUST00000196861 1610 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Sh3rf1Q69ZI1 Gm19710-201ENSMUST00000200257 640 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Sh3rf1Q69ZI1 Cnbp-209ENSMUST00000204890 1614 ntAPPRIS ALT1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Sh3rf1Q69ZI1 Gm45564-201ENSMUST00000210460 530 ntTSL 5 BASIC12.75□□□□□ -0.37
Sh3rf1Q69ZI1 Kcnj5-203ENSMUST00000216033 2440 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Sh3rf1Q69ZI1 Gm36500-201ENSMUST00000221821 1626 ntTSL 5 BASIC12.75□□□□□ -0.37
Sh3rf1Q69ZI1 AC154171.1-201ENSMUST00000224610 643 ntBASIC12.75□□□□□ -0.37
Sh3rf1Q69ZI1 AC096628.2-201ENSMUST00000225443 1413 ntBASIC12.75□□□□□ -0.37
Sh3rf1Q69ZI1 Tk1-201ENSMUST00000026661 1440 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Sh3rf1Q69ZI1 F7-201ENSMUST00000033820 1859 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Sh3rf1Q69ZI1 Ier3-201ENSMUST00000003635 1131 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Sh3rf1Q69ZI1 Gm10681-201ENSMUST00000058728 1610 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Sh3rf1Q69ZI1 4930550L24Rik-201ENSMUST00000062542 1572 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Sh3rf1Q69ZI1 Qrich1-201ENSMUST00000006851 3331 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Sh3rf1Q69ZI1 2810407A14Rik-201ENSMUST00000069809 1699 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Sh3rf1Q69ZI1 Fxyd1-202ENSMUST00000071697 522 ntAPPRIS P1 TSL 3 BASIC12.75□□□□□ -0.37
Sh3rf1Q69ZI1 Lmo7-201ENSMUST00000100337 6092 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Sh3rf1Q69ZI1 Plekhg2-203ENSMUST00000121085 4649 ntAPPRIS ALT2 TSL 2 BASIC12.75□□□□□ -0.37
Sh3rf1Q69ZI1 Adam22-203ENSMUST00000088744 9245 ntAPPRIS ALT2 TSL 5 BASIC12.75□□□□□ -0.37
Sh3rf1Q69ZI1 E2f8-202ENSMUST00000119223 3499 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Sh3rf1Q69ZI1 Ildr1-201ENSMUST00000023617 3042 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
Sh3rf1Q69ZI1 Ralgps2-209ENSMUST00000189316 2924 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Sh3rf1Q69ZI1 Kdm4d-201ENSMUST00000058796 2695 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Sh3rf1Q69ZI1 Mrps26-202ENSMUST00000145614 4278 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Sh3rf1Q69ZI1 Ppp1r10-202ENSMUST00000087211 4255 ntAPPRIS P1 TSL 5 BASIC12.74□□□□□ -0.37
Sh3rf1Q69ZI1 Zc3h12d-201ENSMUST00000039484 4092 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Sh3rf1Q69ZI1 Mlkl-202ENSMUST00000120432 1976 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
Sh3rf1Q69ZI1 Gm37437-201ENSMUST00000194451 1937 ntBASIC12.74□□□□□ -0.37
Sh3rf1Q69ZI1 Cdc25c-201ENSMUST00000060710 1941 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Sh3rf1Q69ZI1 Dctn2-201ENSMUST00000026479 1784 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Sh3rf1Q69ZI1 Gipc3-201ENSMUST00000045102 3521 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Sh3rf1Q69ZI1 Pxdn-202ENSMUST00000122328 6614 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Sh3rf1Q69ZI1 Gm45684-201ENSMUST00000210244 1571 ntBASIC12.74□□□□□ -0.37
Sh3rf1Q69ZI1 Pkp1-201ENSMUST00000027667 4669 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Sh3rf1Q69ZI1 Plaur-201ENSMUST00000002284 1506 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Sh3rf1Q69ZI1 Lat2-205ENSMUST00000200998 1481 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Sh3rf1Q69ZI1 Dnaic2-201ENSMUST00000069325 2874 ntAPPRIS P1 TSL 5 BASIC12.74□□□□□ -0.37
Sh3rf1Q69ZI1 Ush1c-206ENSMUST00000154292 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Sh3rf1Q69ZI1 AC154262.2-202ENSMUST00000225158 1331 ntBASIC12.74□□□□□ -0.37
Sh3rf1Q69ZI1 Btnl2-202ENSMUST00000178562 2563 ntAPPRIS ALT2 TSL 5 BASIC12.74□□□□□ -0.37
Sh3rf1Q69ZI1 Btnl2-201ENSMUST00000025198 2564 ntAPPRIS P2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Sh3rf1Q69ZI1 Gm13369-201ENSMUST00000119442 987 ntBASIC12.74□□□□□ -0.37
Sh3rf1Q69ZI1 Cdk4-202ENSMUST00000120226 714 ntTSL 5 BASIC12.74□□□□□ -0.37
Sh3rf1Q69ZI1 Drap1-209ENSMUST00000136579 734 ntTSL 2 BASIC12.74□□□□□ -0.37
Sh3rf1Q69ZI1 Pla2g10os-201ENSMUST00000141172 174 ntTSL 5 BASIC12.74□□□□□ -0.37
Sh3rf1Q69ZI1 Spdye4b-202ENSMUST00000159781 1128 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Sh3rf1Q69ZI1 Gm17180-201ENSMUST00000172211 435 ntTSL 3 BASIC12.74□□□□□ -0.37
Sh3rf1Q69ZI1 Gm19184-201ENSMUST00000196798 928 ntBASIC12.74□□□□□ -0.37
Sh3rf1Q69ZI1 4930502A04Rik-201ENSMUST00000214059 865 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Sh3rf1Q69ZI1 Spc24-204ENSMUST00000216057 627 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Sh3rf1Q69ZI1 AC153845.2-201ENSMUST00000217535 673 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Sh3rf1Q69ZI1 Fkbp7-201ENSMUST00000002809 860 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Sh3rf1Q69ZI1 Utp23-201ENSMUST00000059599 740 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Sh3rf1Q69ZI1 Olfr54-201ENSMUST00000072152 942 ntAPPRIS P1 BASIC12.74□□□□□ -0.37
Sh3rf1Q69ZI1 Olfr1375-201ENSMUST00000073543 942 ntAPPRIS P1 BASIC12.74□□□□□ -0.37
Sh3rf1Q69ZI1 Rfc2-201ENSMUST00000023867 4995 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Sh3rf1Q69ZI1 Fcrls-201ENSMUST00000090986 2273 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Sh3rf1Q69ZI1 AC156031.2-201ENSMUST00000213107 3310 ntBASIC12.74□□□□□ -0.37
Sh3rf1Q69ZI1 Gm4219-201ENSMUST00000168140 2143 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Retrieved 100 of 76,532 protein–RNA pairs in 30.7 ms