Protein–RNA interactions for Protein: Q07563

Col17a1, Collagen alpha-1(XVII) chain, mousemouse

Predictions only

Length 1,470 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col17a1Q07563 Cux1-206ENSMUST00000176172 4882 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
Col17a1Q07563 Fbxo39-201ENSMUST00000108504 1708 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
Col17a1Q07563 Mpv17-201ENSMUST00000154241 1724 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
Col17a1Q07563 Olfm2-201ENSMUST00000034692 1836 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
Col17a1Q07563 Zfp281-202ENSMUST00000112046 4937 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Col17a1Q07563 Slc24a4-202ENSMUST00000159329 4465 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
Col17a1Q07563 Tmem181c-ps-201ENSMUST00000115772 1288 ntBASIC18.85■□□□□ 0.61
Col17a1Q07563 Gm11660-201ENSMUST00000120955 412 ntBASIC18.85■□□□□ 0.61
Col17a1Q07563 Gm4943-201ENSMUST00000132879 424 ntBASIC18.85■□□□□ 0.61
Col17a1Q07563 Gm43163-201ENSMUST00000196571 442 ntBASIC18.85■□□□□ 0.61
Col17a1Q07563 Pet100-203ENSMUST00000207389 363 ntTSL 2 BASIC18.85■□□□□ 0.61
Col17a1Q07563 E230014E18Rik-201ENSMUST00000215920 859 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Col17a1Q07563 AC154354.1-203ENSMUST00000225565 1364 ntBASIC18.85■□□□□ 0.61
Col17a1Q07563 Cnnm2-201ENSMUST00000077666 3492 ntAPPRIS ALT1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Col17a1Q07563 Serpinb12-201ENSMUST00000081277 1689 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Col17a1Q07563 Cd33-201ENSMUST00000004728 1962 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
Col17a1Q07563 Glrx3-203ENSMUST00000211496 3440 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
Col17a1Q07563 Hacd4-201ENSMUST00000030221 2089 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Col17a1Q07563 Unc5d-203ENSMUST00000210298 3060 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Col17a1Q07563 Serpina11-201ENSMUST00000074693 1447 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
Col17a1Q07563 Alg14-201ENSMUST00000039442 2037 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Col17a1Q07563 Hsd17b11-202ENSMUST00000119025 2234 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Col17a1Q07563 Ddx51-201ENSMUST00000031478 4846 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Col17a1Q07563 Popdc2-201ENSMUST00000023494 2169 ntAPPRIS P4 TSL 1 (best) BASIC18.85■□□□□ 0.61
Col17a1Q07563 Gm20125-205ENSMUST00000208005 1979 ntTSL 5 BASIC18.84■□□□□ 0.61
Col17a1Q07563 Ighv1-56-201ENSMUST00000103527 294 ntAPPRIS P1 BASIC18.84■□□□□ 0.61
Col17a1Q07563 Gsg1-202ENSMUST00000111909 1087 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
Col17a1Q07563 Gm16210-201ENSMUST00000122161 610 ntBASIC18.84■□□□□ 0.61
Col17a1Q07563 Chn2-209ENSMUST00000146114 1227 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Col17a1Q07563 Gm20471-201ENSMUST00000172793 626 ntTSL 3 BASIC18.84■□□□□ 0.61
Col17a1Q07563 D5Ertd605e-201ENSMUST00000201128 1081 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Col17a1Q07563 Gm6108-201ENSMUST00000208365 367 ntBASIC18.84■□□□□ 0.61
Col17a1Q07563 Gm31513-201ENSMUST00000223261 684 ntTSL 2 BASIC18.84■□□□□ 0.61
Col17a1Q07563 AC117769.1-201ENSMUST00000224716 1120 ntBASIC18.84■□□□□ 0.61
Col17a1Q07563 AC174797.2-201ENSMUST00000225835 165 ntBASIC18.84■□□□□ 0.61
Col17a1Q07563 Krtap12-1-201ENSMUST00000092370 656 ntAPPRIS P1 BASIC18.84■□□□□ 0.61
Col17a1Q07563 Mir341-201ENSMUST00000093593 96 ntBASIC18.84■□□□□ 0.61
Col17a1Q07563 Aven-202ENSMUST00000099588 791 ntAPPRIS ALT2 TSL 3 BASIC18.84■□□□□ 0.61
Col17a1Q07563 Dgki-203ENSMUST00000101532 4596 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
Col17a1Q07563 Sptlc1-201ENSMUST00000021920 2606 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Col17a1Q07563 Dctn1-201ENSMUST00000077407 4118 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
Col17a1Q07563 Smim1-201ENSMUST00000125533 2568 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Col17a1Q07563 Eif2c5-201ENSMUST00000125609 1416 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Col17a1Q07563 AC166361.2-201ENSMUST00000219269 1415 ntBASIC18.84■□□□□ 0.61
Col17a1Q07563 Pls1-201ENSMUST00000093800 3704 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Col17a1Q07563 Ppp4r4-201ENSMUST00000021631 3964 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
Col17a1Q07563 Dcp1b-202ENSMUST00000112777 3313 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
Col17a1Q07563 Hnf1b-203ENSMUST00000108114 2659 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Col17a1Q07563 Pxdn-201ENSMUST00000118321 2698 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Col17a1Q07563 Igdcc4-205ENSMUST00000213533 6220 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
Col17a1Q07563 Igdcc4-201ENSMUST00000035499 6223 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
Col17a1Q07563 Rspry1-207ENSMUST00000212729 2800 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Col17a1Q07563 Zfp212-201ENSMUST00000009411 2801 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Col17a1Q07563 Ptgds-203ENSMUST00000114259 775 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
Col17a1Q07563 Gm11540-201ENSMUST00000117457 780 ntBASIC18.84■□□□□ 0.61
Col17a1Q07563 4933417D19Rik-201ENSMUST00000181432 1229 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Col17a1Q07563 Gm37365-201ENSMUST00000193109 409 ntBASIC18.84■□□□□ 0.61
Col17a1Q07563 Pmvk-204ENSMUST00000198440 978 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Col17a1Q07563 Wbp1-209ENSMUST00000205023 716 ntBASIC18.84■□□□□ 0.61
Col17a1Q07563 Nutf2-202ENSMUST00000212042 645 ntAPPRIS P1 TSL 3 BASIC18.84■□□□□ 0.61
Col17a1Q07563 Gm32743-201ENSMUST00000214196 594 ntTSL 3 BASIC18.84■□□□□ 0.61
Col17a1Q07563 AC103672.1-201ENSMUST00000227502 365 ntBASIC18.84■□□□□ 0.61
Col17a1Q07563 Rps8-ps4-201ENSMUST00000092523 612 ntBASIC18.84■□□□□ 0.61
Col17a1Q07563 Cchcr1-201ENSMUST00000045956 2748 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
Col17a1Q07563 Islr2-203ENSMUST00000163897 4303 ntAPPRIS P3 TSL 2 BASIC18.83■□□□□ 0.61
Col17a1Q07563 Macrod2-201ENSMUST00000043836 3552 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
Col17a1Q07563 Map4k4-202ENSMUST00000168431 5632 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.61
Col17a1Q07563 Parp2-201ENSMUST00000036126 1894 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Col17a1Q07563 Kazn-201ENSMUST00000036476 3843 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.61
Col17a1Q07563 Hpse2-201ENSMUST00000099428 1779 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Col17a1Q07563 Gm8899-201ENSMUST00000214635 1332 ntBASIC18.83■□□□□ 0.61
Col17a1Q07563 Foxh1-201ENSMUST00000037824 1306 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Col17a1Q07563 Pip5kl1-201ENSMUST00000055304 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Col17a1Q07563 Mtmr3-202ENSMUST00000109943 5674 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Col17a1Q07563 Hpse-201ENSMUST00000045617 3117 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.6
Col17a1Q07563 Ino80c-204ENSMUST00000153360 2498 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Col17a1Q07563 2010300F17Rik-202ENSMUST00000181758 2493 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Col17a1Q07563 Ifitm1-202ENSMUST00000106040 560 ntAPPRIS P1 TSL 3 BASIC18.83■□□□□ 0.6
Col17a1Q07563 Ifitm1-203ENSMUST00000106042 882 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Col17a1Q07563 Atp5g3-202ENSMUST00000111996 723 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
Col17a1Q07563 Gm27211-201ENSMUST00000183507 631 ntTSL 5 BASIC18.83■□□□□ 0.6
Col17a1Q07563 Cdk5-203ENSMUST00000198990 783 ntTSL 5 BASIC18.83■□□□□ 0.6
Col17a1Q07563 Gm9487-201ENSMUST00000216600 472 ntBASIC18.83■□□□□ 0.6
Col17a1Q07563 Ifitm1-201ENSMUST00000026564 736 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Col17a1Q07563 Pde8a-201ENSMUST00000026672 3802 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Col17a1Q07563 Sectm1b-202ENSMUST00000081499 1222 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
Col17a1Q07563 Trp53-203ENSMUST00000108658 1771 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
Col17a1Q07563 Trp53-201ENSMUST00000005371 1772 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
Col17a1Q07563 Nt5c2-203ENSMUST00000172239 3148 ntTSL 5 BASIC18.83■□□□□ 0.6
Col17a1Q07563 Styxl1-208ENSMUST00000178515 1651 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Col17a1Q07563 Cdk2-202ENSMUST00000026416 2406 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Col17a1Q07563 Adgrd2-ps-201ENSMUST00000118797 2662 ntBASIC18.82■□□□□ 0.6
Col17a1Q07563 Cbarp-215ENSMUST00000170219 2941 ntAPPRIS P2 TSL 5 BASIC18.82■□□□□ 0.6
Col17a1Q07563 Ung-203ENSMUST00000112275 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Col17a1Q07563 Zfp410-201ENSMUST00000045931 2597 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Col17a1Q07563 Zfp125-201ENSMUST00000079237 2488 ntBASIC18.82■□□□□ 0.6
Col17a1Q07563 Irf1-203ENSMUST00000108922 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Col17a1Q07563 Crygf-202ENSMUST00000114027 594 ntTSL 2 BASIC18.82■□□□□ 0.6
Col17a1Q07563 Gm5419-201ENSMUST00000119301 527 ntBASIC18.82■□□□□ 0.6
Col17a1Q07563 Gm8019-201ENSMUST00000119317 587 ntBASIC18.82■□□□□ 0.6
Retrieved 100 of 76,532 protein–RNA pairs in 49.5 ms