Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Cyb5d1-202ENSMUST00000108660 1034 ntTSL 5 BASIC10.87□□□□□ -0.67
Nkx3-1P97436 Rhox2c-201ENSMUST00000115190 762 ntAPPRIS P1 TSL 5 BASIC10.87□□□□□ -0.67
Nkx3-1P97436 1810063I02Rik-201ENSMUST00000130205 274 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
Nkx3-1P97436 Gm11772-201ENSMUST00000136542 532 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
Nkx3-1P97436 Gm5070-201ENSMUST00000177599 862 ntBASIC10.87□□□□□ -0.67
Nkx3-1P97436 Rpl36-ps4-201ENSMUST00000179601 354 ntAPPRIS P1 TSL 5 BASIC10.87□□□□□ -0.67
Nkx3-1P97436 Ak6-205ENSMUST00000190729 1184 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
Nkx3-1P97436 Gm37986-201ENSMUST00000193285 383 ntBASIC10.87□□□□□ -0.67
Nkx3-1P97436 Gm42920-201ENSMUST00000196616 409 ntTSL 3 BASIC10.87□□□□□ -0.67
Nkx3-1P97436 Rprl1-202ENSMUST00000198476 238 ntBASIC10.87□□□□□ -0.67
Nkx3-1P97436 Gm42997-202ENSMUST00000200321 985 ntBASIC10.87□□□□□ -0.67
Nkx3-1P97436 Rpl7a-ps2-201ENSMUST00000200554 774 ntBASIC10.87□□□□□ -0.67
Nkx3-1P97436 Gm45691-201ENSMUST00000206905 1120 ntBASIC10.87□□□□□ -0.67
Nkx3-1P97436 Acsm5-207ENSMUST00000207813 1084 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
Nkx3-1P97436 Gm32141-201ENSMUST00000220189 488 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
Nkx3-1P97436 Ift43-205ENSMUST00000222821 783 ntAPPRIS ALT2 TSL 1 (best) BASIC10.87□□□□□ -0.67
Nkx3-1P97436 1110017D15Rik-201ENSMUST00000030152 1114 ntAPPRIS P1 TSL 5 BASIC10.87□□□□□ -0.67
Nkx3-1P97436 Prr15l-202ENSMUST00000062172 1242 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Nkx3-1P97436 Adm2-201ENSMUST00000066991 1043 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Nkx3-1P97436 Ndufa3-201ENSMUST00000076657 515 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Nkx3-1P97436 Clec4b2-201ENSMUST00000088455 1174 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Nkx3-1P97436 Fnbp1-203ENSMUST00000100207 1680 ntTSL 5 BASIC10.87□□□□□ -0.67
Nkx3-1P97436 Gm43364-201ENSMUST00000196046 3274 ntBASIC10.87□□□□□ -0.67
Nkx3-1P97436 Vax2os-203ENSMUST00000155159 4063 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
Nkx3-1P97436 Phactr3-205ENSMUST00000108917 4858 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
Nkx3-1P97436 Mtus2-203ENSMUST00000085558 7543 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
Nkx3-1P97436 Brdt-201ENSMUST00000031215 4745 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Nkx3-1P97436 Mapk8-204ENSMUST00000111944 1528 ntAPPRIS ALT1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Nkx3-1P97436 Fnbp1-206ENSMUST00000113555 1776 ntTSL 5 BASIC10.87□□□□□ -0.67
Nkx3-1P97436 Plekha2-204ENSMUST00000128715 3463 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Nkx3-1P97436 Xrcc3-201ENSMUST00000021715 2422 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Nkx3-1P97436 Gm44094-201ENSMUST00000204703 2030 ntBASIC10.87□□□□□ -0.67
Nkx3-1P97436 4930513N10Rik-204ENSMUST00000212647 3957 ntBASIC10.87□□□□□ -0.67
Nkx3-1P97436 Brwd1-202ENSMUST00000099502 8547 ntAPPRIS P2 TSL 1 (best) BASIC10.87□□□□□ -0.67
Nkx3-1P97436 Phf8-205ENSMUST00000112668 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC10.87□□□□□ -0.67
Nkx3-1P97436 Rnf185-201ENSMUST00000064364 2906 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
Nkx3-1P97436 Dus2-201ENSMUST00000034375 1860 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Nkx3-1P97436 Klhl12-201ENSMUST00000027725 3408 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Nkx3-1P97436 Ercc5-201ENSMUST00000027214 3907 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Nkx3-1P97436 Prss30-201ENSMUST00000024936 1470 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Nkx3-1P97436 Srd5a1-202ENSMUST00000091514 2644 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Nkx3-1P97436 Ppp1r12b-209ENSMUST00000168381 3621 ntAPPRIS P2 TSL 1 (best) BASIC10.86□□□□□ -0.67
Nkx3-1P97436 Cyp4f16-208ENSMUST00000169591 2242 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Nkx3-1P97436 Atxn2l-201ENSMUST00000040202 3853 ntAPPRIS P3 TSL 1 (best) BASIC10.86□□□□□ -0.67
Nkx3-1P97436 Ntrk2-208ENSMUST00000225583 2719 ntBASIC10.86□□□□□ -0.67
Nkx3-1P97436 Pde4a-203ENSMUST00000115458 2962 ntAPPRIS ALT2 TSL 1 (best) BASIC10.86□□□□□ -0.67
Nkx3-1P97436 Glis3-209ENSMUST00000162022 7514 ntAPPRIS P2 TSL 1 (best) BASIC10.86□□□□□ -0.67
Nkx3-1P97436 Epb41l5-208ENSMUST00000191046 6870 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Nkx3-1P97436 Dnpep-202ENSMUST00000113605 1571 ntAPPRIS P3 TSL 1 (best) BASIC10.86□□□□□ -0.67
Nkx3-1P97436 Spert-202ENSMUST00000164082 1560 ntAPPRIS ALT2 TSL 2 BASIC10.86□□□□□ -0.67
Nkx3-1P97436 Fen1-201ENSMUST00000025651 2341 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Nkx3-1P97436 Klhl30-201ENSMUST00000027533 3089 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Nkx3-1P97436 Dysf-205ENSMUST00000113823 6578 ntAPPRIS ALT2 TSL 5 BASIC10.86□□□□□ -0.67
Nkx3-1P97436 Fzd1-201ENSMUST00000054294 4197 ntAPPRIS P1 BASIC10.86□□□□□ -0.67
Nkx3-1P97436 Ccdc125-201ENSMUST00000057325 2413 ntAPPRIS P3 TSL 1 (best) BASIC10.86□□□□□ -0.67
Nkx3-1P97436 Gm8798-201ENSMUST00000211877 1661 ntBASIC10.86□□□□□ -0.67
Nkx3-1P97436 Mfsd4a-205ENSMUST00000144548 3288 ntTSL 1 (best) BASIC10.86□□□□□ -0.67
Nkx3-1P97436 Twf1-201ENSMUST00000023087 3025 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Nkx3-1P97436 Hnf1b-201ENSMUST00000021016 2759 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Nkx3-1P97436 Eme2-201ENSMUST00000119848 5226 ntTSL 1 (best) BASIC10.86□□□□□ -0.67
Nkx3-1P97436 Hadhb-202ENSMUST00000114783 2045 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Nkx3-1P97436 Cngb1-202ENSMUST00000119870 6189 ntAPPRIS P2 TSL 1 (best) BASIC10.86□□□□□ -0.67
Nkx3-1P97436 Gabpb1-205ENSMUST00000110424 2613 ntAPPRIS P3 TSL 1 (best) BASIC10.86□□□□□ -0.67
Nkx3-1P97436 Kpna7-203ENSMUST00000116454 1500 ntAPPRIS P3 TSL 1 (best) BASIC10.86□□□□□ -0.67
Nkx3-1P97436 Dnaaf5-201ENSMUST00000026975 3450 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Nkx3-1P97436 Oprm1-215ENSMUST00000105607 2369 ntAPPRIS P2 TSL 1 (best) BASIC10.86□□□□□ -0.67
Nkx3-1P97436 Scg3-201ENSMUST00000034699 2384 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Nkx3-1P97436 Limd2-203ENSMUST00000106875 936 ntAPPRIS P1 TSL 3 BASIC10.86□□□□□ -0.67
Nkx3-1P97436 Lamr1-ps1-201ENSMUST00000119759 874 ntBASIC10.86□□□□□ -0.67
Nkx3-1P97436 Gm13813-201ENSMUST00000120998 787 ntBASIC10.86□□□□□ -0.67
Nkx3-1P97436 Gm14832-201ENSMUST00000121289 322 ntBASIC10.86□□□□□ -0.67
Nkx3-1P97436 Olfr647-ps1-201ENSMUST00000121599 960 ntBASIC10.86□□□□□ -0.67
Nkx3-1P97436 Msrb3-202ENSMUST00000130950 561 ntTSL 3 BASIC10.86□□□□□ -0.67
Nkx3-1P97436 Gm24845-201ENSMUST00000158034 109 ntBASIC10.86□□□□□ -0.67
Nkx3-1P97436 Fbxw4-203ENSMUST00000160003 387 ntTSL 3 BASIC10.86□□□□□ -0.67
Nkx3-1P97436 Pdxk-ps-202ENSMUST00000160550 876 ntBASIC10.86□□□□□ -0.67
Nkx3-1P97436 Nat8f1-201ENSMUST00000161198 1021 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Nkx3-1P97436 Gm17227-202ENSMUST00000170286 1016 ntTSL 1 (best) BASIC10.86□□□□□ -0.67
Nkx3-1P97436 Gm3625-201ENSMUST00000170816 102 ntAPPRIS P1 BASIC10.86□□□□□ -0.67
Nkx3-1P97436 Malat1-204ENSMUST00000173523 656 ntTSL 3 BASIC10.86□□□□□ -0.67
Nkx3-1P97436 Gm28882-201ENSMUST00000185504 314 ntBASIC10.86□□□□□ -0.67
Nkx3-1P97436 Gm28172-201ENSMUST00000189880 506 ntTSL 3 BASIC10.86□□□□□ -0.67
Nkx3-1P97436 S100a3-204ENSMUST00000200290 509 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Nkx3-1P97436 Gm8913-201ENSMUST00000209491 641 ntBASIC10.86□□□□□ -0.67
Nkx3-1P97436 Rassf5-205ENSMUST00000212202 958 ntTSL 5 BASIC10.86□□□□□ -0.67
Nkx3-1P97436 Gm3898-202ENSMUST00000216905 328 ntTSL 2 BASIC10.86□□□□□ -0.67
Nkx3-1P97436 2410015M20Rik-201ENSMUST00000052832 755 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Nkx3-1P97436 Olfr450-201ENSMUST00000067503 933 ntAPPRIS P1 BASIC10.86□□□□□ -0.67
Nkx3-1P97436 Klk1b27-201ENSMUST00000079859 889 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Nkx3-1P97436 Cdyl-202ENSMUST00000163595 3575 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Nkx3-1P97436 Myo18a-220ENSMUST00000164334 5381 ntAPPRIS ALT2 TSL 5 BASIC10.86□□□□□ -0.67
Nkx3-1P97436 Rnls-202ENSMUST00000163093 1378 ntTSL 1 (best) BASIC10.86□□□□□ -0.67
Nkx3-1P97436 Slc3a2-207ENSMUST00000206598 1393 ntTSL 2 BASIC10.86□□□□□ -0.67
Nkx3-1P97436 Madd-203ENSMUST00000075269 5756 ntAPPRIS ALT2 TSL 2 BASIC10.86□□□□□ -0.67
Nkx3-1P97436 Grin1-201ENSMUST00000028335 4238 ntTSL 1 (best) BASIC10.86□□□□□ -0.67
Nkx3-1P97436 Crcp-201ENSMUST00000026608 1492 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Nkx3-1P97436 Luc7l3-202ENSMUST00000107820 3478 ntAPPRIS P1 TSL 5 BASIC10.86□□□□□ -0.67
Nkx3-1P97436 Ssr1-203ENSMUST00000225246 1825 ntBASIC10.86□□□□□ -0.67
Nkx3-1P97436 Aqr-201ENSMUST00000043160 4888 ntAPPRIS P3 TSL 1 (best) BASIC10.86□□□□□ -0.67
Nkx3-1P97436 Phactr3-201ENSMUST00000103065 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC10.86□□□□□ -0.67
Retrieved 100 of 76,532 protein–RNA pairs in 42.9 ms