Protein–RNA interactions for Protein: P55288

Cdh11, Cadherin-11, mousemouse

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdh11P55288 Stx17-201ENSMUST00000064765 1531 ntAPPRIS P1 TSL 5 BASIC11.48□□□□□ -0.57
Cdh11P55288 4930550L24Rik-201ENSMUST00000062542 1572 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Cdh11P55288 Cd33-202ENSMUST00000039861 1791 ntAPPRIS P3 TSL 1 (best) BASIC11.48□□□□□ -0.57
Cdh11P55288 Tspan13-201ENSMUST00000020896 1932 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Cdh11P55288 Daam2-202ENSMUST00000224595 1926 ntBASIC11.48□□□□□ -0.57
Cdh11P55288 Ibsp-201ENSMUST00000031246 2068 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Cdh11P55288 Specc1-213ENSMUST00000202179 6676 ntAPPRIS ALT2 TSL 1 (best) BASIC11.48□□□□□ -0.57
Cdh11P55288 Trpv6-203ENSMUST00000201471 2304 ntAPPRIS P2 TSL 1 (best) BASIC11.48□□□□□ -0.57
Cdh11P55288 Suox-201ENSMUST00000054764 2497 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Cdh11P55288 Podn-202ENSMUST00000106708 2947 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Cdh11P55288 Setdb2-205ENSMUST00000161459 2995 ntAPPRIS P2 TSL 1 (best) BASIC11.48□□□□□ -0.57
Cdh11P55288 Mpv17l-201ENSMUST00000023360 3087 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Cdh11P55288 Uap1l1-201ENSMUST00000102925 3349 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Cdh11P55288 Apbb2-215ENSMUST00000162349 3362 ntAPPRIS P3 TSL 5 BASIC11.48□□□□□ -0.57
Cdh11P55288 Apbb2-201ENSMUST00000087256 3362 ntAPPRIS ALT1 TSL 5 BASIC11.48□□□□□ -0.57
Cdh11P55288 Kcnt1-212ENSMUST00000197917 3711 ntAPPRIS ALT2 TSL 5 BASIC11.48□□□□□ -0.57
Cdh11P55288 Me3-202ENSMUST00000032856 4485 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Cdh11P55288 Kcnd1-201ENSMUST00000009875 5287 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Cdh11P55288 Ltbp2-202ENSMUST00000110254 6602 ntAPPRIS P2 TSL 1 (best) BASIC11.47□□□□□ -0.57
Cdh11P55288 Mcm9-204ENSMUST00000219838 4132 ntTSL 5 BASIC11.47□□□□□ -0.57
Cdh11P55288 March7-203ENSMUST00000102748 3594 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Cdh11P55288 Aph1a-201ENSMUST00000015894 2863 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Cdh11P55288 Scn5a-201ENSMUST00000065196 8287 ntAPPRIS ALT1 TSL 5 BASIC11.47□□□□□ -0.57
Cdh11P55288 Ralgps2-211ENSMUST00000190648 2498 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Cdh11P55288 Atxn10-201ENSMUST00000163242 2425 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Cdh11P55288 Trpc7-208ENSMUST00000174457 2424 ntTSL 5 BASIC11.47□□□□□ -0.57
Cdh11P55288 Rai1-207ENSMUST00000171108 7125 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Cdh11P55288 AC157950.1-201ENSMUST00000217561 2168 ntBASIC11.47□□□□□ -0.57
Cdh11P55288 Cyb561d1-202ENSMUST00000106654 1914 ntAPPRIS ALT1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Cdh11P55288 Cyyr1-201ENSMUST00000114174 5464 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Cdh11P55288 2810407A14Rik-201ENSMUST00000069809 1699 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Cdh11P55288 Dpysl5-201ENSMUST00000088081 5022 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Cdh11P55288 Samd4-201ENSMUST00000022386 4564 ntAPPRIS P4 TSL 1 (best) BASIC11.47□□□□□ -0.57
Cdh11P55288 Dera-207ENSMUST00000203693 1446 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Cdh11P55288 AI314180-202ENSMUST00000102889 7045 ntAPPRIS P2 TSL 1 (best) BASIC11.47□□□□□ -0.57
Cdh11P55288 Gm9755-201ENSMUST00000032981 1356 ntBASIC11.47□□□□□ -0.57
Cdh11P55288 Cpsf4l-203ENSMUST00000106617 1123 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Cdh11P55288 3110009E18Rik-203ENSMUST00000112644 488 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Cdh11P55288 Gm8213-201ENSMUST00000118191 441 ntBASIC11.47□□□□□ -0.57
Cdh11P55288 Gm5687-201ENSMUST00000118252 640 ntBASIC11.47□□□□□ -0.57
Cdh11P55288 Gm15420-201ENSMUST00000133274 382 ntTSL 3 BASIC11.47□□□□□ -0.57
Cdh11P55288 Gm8062-201ENSMUST00000139696 444 ntBASIC11.47□□□□□ -0.57
Cdh11P55288 Proscos-202ENSMUST00000178990 666 ntBASIC11.47□□□□□ -0.57
Cdh11P55288 9130604C24Rik-201ENSMUST00000197965 956 ntBASIC11.47□□□□□ -0.57
Cdh11P55288 Nme2-201ENSMUST00000021217 1012 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Cdh11P55288 Kitl-204ENSMUST00000218200 564 ntTSL 5 BASIC11.47□□□□□ -0.57
Cdh11P55288 Mrto4-ps1-201ENSMUST00000220565 721 ntBASIC11.47□□□□□ -0.57
Cdh11P55288 AC154305.4-201ENSMUST00000224520 614 ntBASIC11.47□□□□□ -0.57
Cdh11P55288 Naa10-201ENSMUST00000033763 962 ntAPPRIS P3 TSL 1 (best) BASIC11.47□□□□□ -0.57
Cdh11P55288 4921530L21Rik-201ENSMUST00000045892 1161 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Cdh11P55288 Lgr5-201ENSMUST00000020350 4714 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Cdh11P55288 Mxd1-201ENSMUST00000001184 4666 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Cdh11P55288 Etaa1-201ENSMUST00000076661 4185 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Cdh11P55288 Ank2-203ENSMUST00000182008 2474 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Cdh11P55288 Wdcp-205ENSMUST00000220215 2202 ntAPPRIS ALT2 TSL 1 (best) BASIC11.47□□□□□ -0.57
Cdh11P55288 Ppargc1b-202ENSMUST00000075299 3656 ntAPPRIS P2 TSL 1 (best) BASIC11.47□□□□□ -0.57
Cdh11P55288 Tmem115-201ENSMUST00000010189 2194 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Cdh11P55288 Pfkfb3-204ENSMUST00000114844 2107 ntTSL 5 BASIC11.47□□□□□ -0.57
Cdh11P55288 Kank4-201ENSMUST00000102790 4795 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Cdh11P55288 Gtf2ird1-202ENSMUST00000074114 3330 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Cdh11P55288 Gstt3-201ENSMUST00000001715 1880 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Cdh11P55288 Rassf8-201ENSMUST00000032388 1733 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Cdh11P55288 Bdnf-205ENSMUST00000111045 3973 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Cdh11P55288 Mettl27-201ENSMUST00000047196 2808 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Cdh11P55288 Gm36500-201ENSMUST00000221821 1626 ntTSL 5 BASIC11.46□□□□□ -0.57
Cdh11P55288 Csrnp3-207ENSMUST00000145598 2566 ntAPPRIS ALT2 TSL 1 (best) BASIC11.46□□□□□ -0.57
Cdh11P55288 Tenm3-206ENSMUST00000190840 8663 ntAPPRIS ALT1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Cdh11P55288 4933436I20Rik-202ENSMUST00000190615 1509 ntTSL 5 BASIC11.46□□□□□ -0.57
Cdh11P55288 Grin1-205ENSMUST00000114312 3838 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
Cdh11P55288 Grin1-207ENSMUST00000114317 3809 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Cdh11P55288 Gm11261-203ENSMUST00000132470 838 ntTSL 5 BASIC11.46□□□□□ -0.57
Cdh11P55288 Mrps24-205ENSMUST00000154330 995 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Cdh11P55288 Oaz1-207ENSMUST00000180036 1044 ntAPPRIS P2 TSL 5 BASIC11.46□□□□□ -0.57
Cdh11P55288 Mhrt-201ENSMUST00000181782 828 ntTSL 2 BASIC11.46□□□□□ -0.57
Cdh11P55288 Gm43818-201ENSMUST00000200605 466 ntBASIC11.46□□□□□ -0.57
Cdh11P55288 Dera-204ENSMUST00000203216 688 ntTSL 5 BASIC11.46□□□□□ -0.57
Cdh11P55288 AC140451.2-201ENSMUST00000228030 664 ntBASIC11.46□□□□□ -0.57
Cdh11P55288 AC154276.1-201ENSMUST00000228874 1299 ntBASIC11.46□□□□□ -0.57
Cdh11P55288 Cd37-201ENSMUST00000033063 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC11.46□□□□□ -0.57
Cdh11P55288 Tpd52-204ENSMUST00000094381 1074 ntTSL 3 BASIC11.46□□□□□ -0.57
Cdh11P55288 Ndrg2-201ENSMUST00000004673 2099 ntAPPRIS P3 TSL 1 (best) BASIC11.46□□□□□ -0.57
Cdh11P55288 Prr12-201ENSMUST00000057293 7023 ntAPPRIS P1 TSL 5 BASIC11.46□□□□□ -0.57
Cdh11P55288 Dpyd-201ENSMUST00000039177 4492 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Cdh11P55288 Rpn1-201ENSMUST00000032143 3633 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
Cdh11P55288 Snx6-201ENSMUST00000005798 1928 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
Cdh11P55288 Olfm2-201ENSMUST00000034692 1836 ntAPPRIS P2 TSL 1 (best) BASIC11.46□□□□□ -0.58
Cdh11P55288 Pdik1l-201ENSMUST00000061234 4686 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
Cdh11P55288 Nudt8-201ENSMUST00000155405 3904 ntAPPRIS P1 TSL 2 BASIC11.46□□□□□ -0.58
Cdh11P55288 Foxl2os-201ENSMUST00000181706 3095 ntTSL 2 BASIC11.46□□□□□ -0.58
Cdh11P55288 Pja1-204ENSMUST00000113797 1676 ntAPPRIS ALT2 TSL 2 BASIC11.46□□□□□ -0.58
Cdh11P55288 Slc22a16-201ENSMUST00000019978 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC11.45□□□□□ -0.58
Cdh11P55288 Acoxl-202ENSMUST00000110344 1573 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Cdh11P55288 Pef1-201ENSMUST00000030563 1551 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Cdh11P55288 Ptprr-204ENSMUST00000128399 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC11.45□□□□□ -0.58
Cdh11P55288 Slc23a4-201ENSMUST00000044387 2175 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Cdh11P55288 Rin2-202ENSMUST00000110005 4641 ntAPPRIS ALT2 TSL 5 BASIC11.45□□□□□ -0.58
Cdh11P55288 Kpna7-203ENSMUST00000116454 1500 ntAPPRIS P3 TSL 1 (best) BASIC11.45□□□□□ -0.58
Cdh11P55288 Tifa-203ENSMUST00000164447 1538 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Cdh11P55288 Kalrn-210ENSMUST00000114964 2693 ntTSL 5 BASIC11.45□□□□□ -0.58
Cdh11P55288 Gm43051-201ENSMUST00000201096 2678 ntBASIC11.45□□□□□ -0.58
Retrieved 100 of 76,532 protein–RNA pairs in 33.3 ms